Wall clock time and date at job start Tue Mar 31 2020 21:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46511 * 109.47210 * 2 1 4 4 C 1.34773 * 119.99565 * 269.99825 * 3 2 1 5 5 O 1.21291 * 119.99564 * 179.97438 * 4 3 2 6 6 C 1.50697 * 120.00475 * 359.97438 * 4 3 2 7 7 S 1.81004 * 109.47392 * 179.97438 * 6 4 3 8 8 C 1.76200 * 99.99932 * 180.02562 * 7 6 4 9 9 H 1.07995 * 119.99871 * 359.97438 * 8 7 6 10 10 C 1.38801 * 119.99710 * 180.02562 * 8 7 6 11 11 N 1.31634 * 120.00090 * 359.97438 * 10 8 7 12 12 Si 1.86792 * 120.00015 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47145 * 89.99267 * 12 10 8 14 14 H 1.48493 * 109.47257 * 209.99424 * 12 10 8 15 15 H 1.48500 * 109.47266 * 329.99719 * 12 10 8 16 16 C 1.46494 * 119.99916 * 89.99398 * 3 2 1 17 17 C 1.53501 * 114.20493 * 120.00328 * 16 3 2 18 18 N 1.47066 * 87.98504 * 87.51848 * 17 16 3 19 19 C 1.34770 * 136.06009 * 207.08148 * 18 17 16 20 20 O 1.21613 * 119.99795 * 0.02562 * 19 18 17 21 21 C 1.47102 * 120.00275 * 179.97438 * 19 18 17 22 22 C 1.32996 * 119.99998 * 179.72519 * 21 19 18 23 23 C 1.51402 * 136.31561 * 359.91217 * 22 21 19 24 24 C 1.53380 * 87.51898 * 206.05482 * 23 22 21 25 25 C 1.51402 * 136.31563 * 180.27823 * 22 21 19 26 26 C 1.47075 * 87.88533 * 27.34375 * 18 17 16 27 27 H 1.09000 * 109.46844 * 60.00201 * 1 2 3 28 28 H 1.08998 * 109.47025 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47618 * 300.00112 * 1 2 3 30 30 H 1.08999 * 109.47618 * 239.99888 * 2 1 3 31 31 H 1.09007 * 109.47367 * 119.99405 * 2 1 3 32 32 H 1.08994 * 109.47255 * 299.99932 * 6 4 3 33 33 H 1.09003 * 109.47304 * 60.00061 * 6 4 3 34 34 H 0.97003 * 120.00035 * 180.02562 * 11 10 8 35 35 H 1.08995 * 113.41672 * 346.80389 * 16 3 2 36 36 H 1.08998 * 113.46420 * 332.74104 * 17 16 3 37 37 H 1.08995 * 113.46777 * 202.29666 * 17 16 3 38 38 H 1.08002 * 120.00178 * 0.02562 * 21 19 18 39 39 H 1.08998 * 113.56339 * 320.63783 * 23 22 21 40 40 H 1.09004 * 113.56275 * 91.36995 * 23 22 21 41 41 H 1.09000 * 113.96770 * 220.29542 * 24 23 22 42 42 H 1.08996 * 113.60216 * 88.79629 * 24 23 22 43 43 H 1.09003 * 113.56257 * 268.62808 * 25 22 21 44 44 H 1.09005 * 113.56527 * 39.29012 * 25 22 21 45 45 H 1.08999 * 113.46646 * 87.43831 * 26 18 17 46 46 H 1.09003 * 113.46723 * 217.87711 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2430 2.0165 -1.1672 5 8 2.6469 3.1602 -1.1672 6 6 1.9924 1.3059 -2.4723 7 16 2.3836 2.4151 -3.8481 8 6 2.0104 1.3590 -5.2082 9 1 1.6562 0.3544 -5.0304 10 6 2.1726 1.8179 -6.5081 11 7 2.6048 3.0422 -6.7247 12 14 1.7776 0.6981 -7.9500 13 1 0.3526 0.8673 -8.3323 14 1 2.6446 1.0510 -9.1028 15 1 2.0214 -0.7142 -7.5613 16 6 2.2624 2.0719 1.2687 17 6 3.7125 2.5361 1.4638 18 7 3.3539 3.7792 0.7646 19 6 4.0043 4.6980 0.0236 20 8 5.1950 4.5745 -0.1904 21 6 3.2736 5.8498 -0.5273 22 6 3.9166 6.7594 -1.2540 23 6 5.3378 6.9766 -1.7285 24 6 5.0185 8.4756 -1.7869 25 6 3.5552 8.0433 -1.9703 26 6 1.9746 3.5820 1.2354 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 2.6229 0.4187 -2.5298 33 1 0.9445 1.0114 -2.5303 34 1 2.7179 3.3631 -7.6331 35 1 1.8381 1.5572 2.1307 36 1 4.4390 1.9286 0.9242 37 1 3.9826 2.6882 2.5087 38 1 2.2160 5.9593 -0.3377 39 1 6.0901 6.7217 -0.9821 40 1 5.5434 6.5365 -2.7043 41 1 5.4393 8.9845 -2.6541 42 1 5.2088 8.9992 -0.8500 43 1 3.2719 7.8960 -3.0125 44 1 2.8448 8.6628 -1.4228 45 1 1.7867 4.0099 2.2201 46 1 1.2206 3.8656 0.5011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079342247.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:08 Heat of formation + Delta-G solvation = 45.453959 kcal Electronic energy + Delta-G solvation = -27985.799412 eV Core-core repulsion = 24199.039440 eV Total energy + Delta-G solvation = -3786.759972 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.00231 -38.91774 -37.93430 -36.75556 -35.46264 -32.41430 -31.03203 -30.17911 -29.47453 -27.93595 -26.00941 -25.48206 -25.47072 -23.43076 -23.21363 -21.97511 -19.56845 -18.45240 -17.67009 -17.53072 -16.89196 -16.63558 -16.23224 -15.53123 -15.22045 -15.09844 -14.79817 -14.68010 -14.17010 -13.99460 -13.85229 -13.38260 -13.23579 -12.90788 -12.84479 -12.61141 -12.48148 -12.15415 -12.03979 -11.80370 -11.72463 -11.61587 -11.44218 -11.16277 -11.04814 -11.00410 -10.92986 -10.75160 -10.73945 -10.20727 -9.79368 -9.28589 -9.14200 -9.05218 -8.73398 -8.58661 -8.18602 -7.94101 -6.46418 -6.20264 -3.89770 1.88819 2.85046 3.05871 3.18762 3.22154 3.25055 3.30086 3.58985 3.94321 4.21768 4.31577 4.49933 4.72838 4.79390 4.87768 4.96008 5.03204 5.14363 5.17073 5.18254 5.27540 5.32852 5.33377 5.42752 5.51909 5.57769 5.66451 5.72930 5.75978 5.78081 5.79149 5.92681 5.94270 5.97336 6.00539 6.04713 6.11144 6.21755 6.33304 6.49496 6.67227 6.71557 7.05777 7.54247 7.60528 8.21113 8.36125 8.65382 8.82969 9.25077 10.86986 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008091 B = 0.004852 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3459.868278 B = 5769.830811 C = 8692.522171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.110 3.890 3 N -0.605 5.605 4 C 0.529 3.471 5 O -0.488 6.488 6 C -0.149 4.149 7 S -0.056 6.056 8 C -0.535 4.535 9 H 0.071 0.929 10 C 0.074 3.926 11 N -0.867 5.867 12 Si 0.917 3.083 13 H -0.277 1.277 14 H -0.282 1.282 15 H -0.272 1.272 16 C 0.112 3.888 17 C 0.087 3.913 18 N -0.613 5.613 19 C 0.616 3.384 20 O -0.556 6.556 21 C -0.160 4.160 22 C -0.076 4.076 23 C -0.100 4.100 24 C -0.143 4.143 25 C -0.105 4.105 26 C 0.097 3.903 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.268 0.732 35 H 0.114 0.886 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.121 0.879 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.101 0.899 44 H 0.071 0.929 45 H 0.085 0.915 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.584 0.461 18.775 19.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.013 4.013 3 N -0.341 5.341 4 C 0.316 3.684 5 O -0.360 6.360 6 C -0.300 4.300 7 S 0.170 5.830 8 C -0.684 4.684 9 H 0.089 0.911 10 C -0.135 4.135 11 N -0.502 5.502 12 Si 0.743 3.257 13 H -0.203 1.203 14 H -0.208 1.208 15 H -0.197 1.197 16 C 0.006 3.994 17 C -0.038 4.038 18 N -0.347 5.347 19 C 0.411 3.589 20 O -0.436 6.436 21 C -0.181 4.181 22 C -0.078 4.078 23 C -0.137 4.137 24 C -0.180 4.180 25 C -0.141 4.141 26 C -0.028 4.028 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.132 0.868 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.139 0.861 39 H 0.098 0.902 40 H 0.117 0.883 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.120 0.880 44 H 0.090 0.910 45 H 0.103 0.897 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.167 2.414 18.356 18.640 hybrid contribution -1.021 -2.303 -0.971 2.700 sum -3.188 0.111 17.385 17.675 Atomic orbital electron populations 1.22229 0.95914 1.02175 1.02706 1.21538 0.94397 0.82097 1.03303 1.47734 1.67900 1.14099 1.04363 1.20340 0.76633 0.87093 0.84318 1.90730 1.41865 1.17099 1.86283 1.23589 1.04373 1.04485 0.97516 1.85422 1.86908 1.17508 0.93126 1.22863 1.51625 1.01498 0.92364 0.91116 1.24970 0.94690 0.95518 0.98319 1.70021 1.43000 1.15660 1.21568 0.86200 0.78371 0.80282 0.80846 1.20298 1.20763 1.19719 1.22327 0.96328 0.93401 0.87378 1.23358 0.97559 0.85763 0.97074 1.48904 1.10642 1.24675 1.50479 1.17396 0.85244 0.80400 0.75879 1.90719 1.15640 1.77082 1.60167 1.21213 0.98853 0.93652 1.04385 1.23274 0.97754 0.93709 0.93070 1.22137 0.94798 0.94367 1.02412 1.22720 0.96462 0.96903 1.01937 1.22288 0.97193 0.93607 1.01057 1.23220 0.86895 0.93394 0.99278 0.91968 0.91644 0.92443 0.89923 0.90549 0.89765 0.89547 0.92254 0.86840 0.90657 0.89653 0.86123 0.90194 0.88346 0.90717 0.90271 0.88039 0.91033 0.89709 0.89897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 10.24 37.16 0.38 -1.11 16 2 C 0.11 1.05 5.95 -4.04 -0.02 1.03 16 3 N -0.60 -7.71 2.74 -165.73 -0.45 -8.17 16 4 C 0.53 9.54 7.25 -10.99 -0.08 9.46 16 5 O -0.49 -10.19 8.88 5.55 0.05 -10.14 16 6 C -0.15 -3.01 4.71 36.00 0.17 -2.84 16 7 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 8 C -0.54 -15.32 9.50 30.94 0.29 -15.02 16 9 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 10 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 11 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 12 Si 0.92 21.56 29.55 -169.99 -5.02 16.53 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 16 C 0.11 1.14 4.88 -67.67 -0.33 0.81 16 17 C 0.09 1.08 8.18 -8.49 -0.07 1.01 16 18 N -0.61 -9.63 2.09 -186.45 -0.39 -10.02 16 19 C 0.62 12.02 5.87 -12.67 -0.07 11.95 16 20 O -0.56 -12.77 15.92 5.27 0.08 -12.69 16 21 C -0.16 -2.86 9.20 -37.80 -0.35 -3.21 16 22 C -0.08 -1.30 6.93 -100.49 -0.70 -1.99 16 23 C -0.10 -1.64 6.99 -27.56 -0.19 -1.83 16 24 C -0.14 -1.79 8.17 -26.19 -0.21 -2.01 16 25 C -0.10 -1.43 7.95 -27.40 -0.22 -1.64 16 26 C 0.10 1.11 7.27 -8.36 -0.06 1.05 16 27 H 0.06 0.68 7.22 -51.93 -0.38 0.30 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.88 6.44 -51.93 -0.33 0.54 16 31 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 32 H 0.08 1.64 7.40 -51.92 -0.38 1.25 16 33 H 0.09 1.62 7.19 -51.91 -0.37 1.25 16 34 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.11 0.70 8.10 -51.93 -0.42 0.28 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.12 1.93 7.98 -52.49 -0.42 1.51 16 39 H 0.08 1.37 7.49 -51.93 -0.39 0.98 16 40 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.08 1.10 7.36 -51.93 -0.38 0.71 16 LS Contribution 387.68 15.07 5.84 5.84 Total: -1.00 -37.35 387.68 -10.20 -47.55 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -7.27 Total: 2.73 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -1.56 Total: -2.32 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: -0.11 Total: -43.76 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: 0.13 Total: -22.83 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.35 -10.20 -47.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079342247.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.001 kcal (2) G-P(sol) polarization free energy of solvation -37.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds