Wall clock time and date at job start Tue Mar 31 2020 21:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46968 * 2 1 4 4 C 1.34775 * 119.99821 * 270.00071 * 3 2 1 5 5 O 1.21282 * 120.00007 * 174.89075 * 4 3 2 6 6 C 1.50700 * 120.00156 * 354.89412 * 4 3 2 7 7 S 1.80999 * 109.46998 * 179.97438 * 6 4 3 8 8 C 1.76200 * 99.99779 * 179.97438 * 7 6 4 9 9 H 1.08001 * 120.00240 * 359.97438 * 8 7 6 10 10 C 1.38800 * 119.99984 * 180.02562 * 8 7 6 11 11 N 1.31632 * 119.99884 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00088 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47448 * 359.97438 * 12 10 8 14 14 H 1.48505 * 109.47577 * 119.99904 * 12 10 8 15 15 H 1.48503 * 109.47210 * 239.99531 * 12 10 8 16 16 C 1.46502 * 120.00060 * 89.99565 * 3 2 1 17 17 C 1.53502 * 114.20143 * 65.12311 * 16 3 2 18 18 N 1.47073 * 87.98270 * 220.14760 * 17 16 3 19 19 C 1.34777 * 136.05578 * 207.08824 * 18 17 16 20 20 O 1.21609 * 119.99917 * 184.81291 * 19 18 17 21 21 C 1.47104 * 119.99956 * 4.80719 * 19 18 17 22 22 C 1.32610 * 124.61998 * 174.67611 * 21 19 18 23 23 C 1.51111 * 110.75911 * 180.02562 * 22 21 19 24 24 C 1.54578 * 104.83826 * 343.40062 * 23 22 21 25 25 C 1.51109 * 124.61893 * 354.72006 * 21 19 18 26 26 C 1.47067 * 87.88524 * 27.34004 * 18 17 16 27 27 H 1.08997 * 109.47004 * 299.99857 * 1 2 3 28 28 H 1.08995 * 109.47526 * 60.00430 * 1 2 3 29 29 H 1.09005 * 109.46741 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47004 * 240.00143 * 2 1 3 31 31 H 1.08998 * 109.47030 * 120.00127 * 2 1 3 32 32 H 1.09000 * 109.47019 * 299.99906 * 6 4 3 33 33 H 1.09002 * 109.47344 * 60.00238 * 6 4 3 34 34 H 0.97000 * 119.99713 * 180.02562 * 11 10 8 35 35 H 1.08992 * 113.28302 * 198.18779 * 16 3 2 36 36 H 1.09002 * 113.46603 * 105.36889 * 17 16 3 37 37 H 1.09000 * 113.52211 * 334.93312 * 17 16 3 38 38 H 1.08001 * 124.62087 * 0.07097 * 22 21 19 39 39 H 1.09001 * 110.36179 * 224.56010 * 23 22 21 40 40 H 1.09000 * 110.36497 * 102.24327 * 23 22 21 41 41 H 1.09001 * 110.97898 * 266.92739 * 24 23 22 42 42 H 1.08995 * 110.98061 * 143.13028 * 24 23 22 43 43 H 1.09003 * 110.36697 * 77.72263 * 25 21 19 44 44 H 1.09003 * 110.36857 * 315.39907 * 25 21 19 45 45 H 1.09002 * 113.46389 * 87.43811 * 26 18 17 46 46 H 1.09002 * 113.46958 * 217.87517 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2429 2.0166 -1.1672 5 8 2.5578 3.1878 -1.1693 6 6 2.1028 1.2717 -2.4697 7 16 2.4659 2.3896 -3.8461 8 6 2.2338 1.2897 -5.2030 9 1 1.9508 0.2630 -5.0236 10 6 2.4157 1.7425 -6.5024 11 7 2.7611 2.9937 -6.7210 12 14 2.1689 0.5766 -7.9408 13 1 1.7854 -0.7644 -7.4311 14 1 1.0930 1.0980 -8.8218 15 1 3.4326 0.4693 -8.7134 16 6 2.2624 2.0719 1.2687 17 6 3.3948 1.4643 2.1083 18 7 2.5652 1.6963 3.3004 19 6 2.7895 1.9105 4.6120 20 8 1.8533 1.9855 5.3846 21 6 4.1666 2.0533 5.1090 22 6 4.4886 2.3649 6.3571 23 6 5.9893 2.4288 6.5231 24 6 6.5559 1.6943 5.2866 25 6 5.4071 1.8659 4.2666 26 6 1.3832 1.5854 2.4325 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.8012 0.4350 -2.4867 33 1 1.0839 0.8965 -2.5660 34 1 2.8879 3.3102 -7.6291 35 1 2.3141 3.1558 1.1662 36 1 4.3104 2.0556 2.0949 37 1 3.5717 0.4089 1.9013 38 1 3.7756 2.5472 7.1475 39 1 6.2917 1.9199 7.4383 40 1 6.3256 3.4655 6.5356 41 1 6.7305 0.6407 5.5047 42 1 7.4679 2.1742 4.9316 43 1 5.5796 2.7443 3.6448 44 1 5.3138 0.9739 3.6472 45 1 1.0290 0.5618 2.3103 46 1 0.5850 2.2796 2.6952 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079342715.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:05 Heat of formation + Delta-G solvation = -32.729939 kcal Electronic energy + Delta-G solvation = -26651.521793 eV Core-core repulsion = 22861.371512 eV Total energy + Delta-G solvation = -3790.150280 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.12728 -40.69760 -39.38902 -38.41854 -36.49819 -34.56099 -32.04514 -31.32071 -30.61037 -29.70537 -28.78595 -27.63247 -27.01578 -24.56690 -23.89030 -22.04760 -21.29865 -20.29097 -19.61037 -19.37367 -18.52524 -17.90410 -17.44891 -17.32831 -16.86006 -16.63634 -16.49937 -16.14562 -15.48756 -15.14606 -14.94827 -14.83842 -14.46029 -14.28681 -14.14761 -13.79312 -13.64446 -13.57886 -13.44416 -13.30506 -13.13647 -12.95011 -12.90751 -12.64002 -12.57740 -12.55911 -12.24685 -12.09997 -12.02073 -11.82203 -11.67834 -11.20785 -11.13817 -10.87253 -10.22636 -10.13919 -9.81653 -9.69629 -8.64110 -8.32721 -6.10095 0.28588 1.21556 1.41595 1.42826 1.52858 1.54947 1.67358 2.05662 2.23202 2.29682 3.01838 3.09997 3.28287 3.33706 3.57154 3.65510 3.71057 3.92717 4.02103 4.04174 4.17411 4.23181 4.24517 4.28205 4.38133 4.40555 4.44755 4.52027 4.54620 4.58535 4.77101 4.78673 4.80629 4.89375 4.93962 4.94846 5.02199 5.15938 5.32601 5.36327 5.38866 5.44879 5.49443 5.53517 6.20302 6.22957 6.50803 6.94601 7.09157 7.11016 8.76570 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020912 B = 0.002204 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.602560 B =12699.429145 C =13389.097366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.092 3.908 3 N -0.591 5.591 4 C 0.540 3.460 5 O -0.560 6.560 6 C -0.123 4.123 7 S -0.154 6.154 8 C -0.541 4.541 9 H 0.084 0.916 10 C 0.012 3.988 11 N -0.912 5.912 12 Si 0.997 3.003 13 H -0.255 1.255 14 H -0.277 1.277 15 H -0.275 1.275 16 C 0.111 3.889 17 C 0.092 3.908 18 N -0.639 5.639 19 C 0.592 3.408 20 O -0.588 6.588 21 C -0.213 4.213 22 C -0.065 4.065 23 C -0.104 4.104 24 C -0.120 4.120 25 C -0.089 4.089 26 C 0.096 3.904 27 H 0.062 0.938 28 H 0.042 0.958 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.270 0.730 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.117 0.883 38 H 0.131 0.869 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.117 0.883 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.632 -9.959 24.365 26.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.029 4.029 3 N -0.324 5.324 4 C 0.328 3.672 5 O -0.438 6.438 6 C -0.274 4.274 7 S 0.073 5.927 8 C -0.689 4.689 9 H 0.102 0.898 10 C -0.192 4.192 11 N -0.548 5.548 12 Si 0.819 3.181 13 H -0.178 1.178 14 H -0.202 1.202 15 H -0.200 1.200 16 C 0.006 3.994 17 C -0.031 4.031 18 N -0.372 5.372 19 C 0.386 3.614 20 O -0.471 6.471 21 C -0.216 4.216 22 C -0.085 4.085 23 C -0.141 4.141 24 C -0.157 4.157 25 C -0.126 4.126 26 C -0.027 4.027 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.126 0.874 34 H 0.079 0.921 35 H 0.128 0.872 36 H 0.114 0.886 37 H 0.135 0.865 38 H 0.149 0.851 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.099 0.901 42 H 0.110 0.890 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.135 0.865 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.688 -8.047 24.865 26.552 hybrid contribution -0.913 -1.308 -1.044 1.907 sum 3.776 -9.355 23.821 25.869 Atomic orbital electron populations 1.22309 0.95097 1.03788 1.02157 1.21956 0.95175 0.80299 1.05448 1.47751 1.65967 1.15248 1.03448 1.20142 0.75452 0.86365 0.85244 1.90696 1.47952 1.17776 1.87328 1.23397 1.06410 1.02910 0.94662 1.85618 1.91022 1.18483 0.97578 1.23214 1.54128 0.98849 0.92677 0.89773 1.26111 0.94030 0.97410 1.01680 1.70192 1.45458 1.16860 1.22325 0.84929 0.78012 0.78280 0.76884 1.17839 1.20207 1.20035 1.22702 0.96741 0.98426 0.81555 1.23783 0.96500 1.03276 0.79541 1.49119 1.12171 1.70284 1.05669 1.17954 0.89256 0.75168 0.79056 1.90769 1.46433 1.54355 1.55509 1.21783 0.92399 1.09517 0.97902 1.24371 0.99069 0.89774 0.95268 1.21562 0.89537 1.02655 1.00314 1.22477 0.97653 1.01644 0.93954 1.21393 0.90685 1.02509 0.97965 1.23647 0.90503 1.03520 0.85000 0.91900 0.93833 0.88960 0.88786 0.87196 0.86898 0.87440 0.92089 0.87226 0.88619 0.86532 0.85118 0.88419 0.88363 0.90129 0.88968 0.90257 0.90248 0.86521 0.90560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.59 9.93 71.98 0.71 -1.87 16 2 C 0.09 1.38 5.11 86.38 0.44 1.82 16 3 N -0.59 -13.56 2.71 -796.64 -2.16 -15.72 16 4 C 0.54 18.59 7.68 87.66 0.67 19.26 16 5 O -0.56 -24.62 15.40 -3.04 -0.05 -24.67 16 6 C -0.12 -4.55 4.61 71.24 0.33 -4.22 16 7 S -0.15 -8.29 20.57 -56.49 -1.16 -9.45 16 8 C -0.54 -29.91 9.50 67.95 0.65 -29.26 16 9 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 10 C 0.01 0.69 5.49 84.86 0.47 1.15 16 11 N -0.91 -55.14 13.22 21.65 0.29 -54.85 16 12 Si 1.00 42.61 29.55 68.60 2.03 44.63 16 13 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 14 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 15 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 16 C 0.11 2.36 4.55 45.55 0.21 2.56 16 17 C 0.09 1.49 6.41 83.18 0.53 2.03 16 18 N -0.64 -13.10 3.69 -862.05 -3.18 -16.27 16 19 C 0.59 14.72 8.04 86.57 0.70 15.42 16 20 O -0.59 -19.17 17.55 -4.06 -0.07 -19.25 16 21 C -0.21 -3.98 6.09 -18.57 -0.11 -4.09 16 22 C -0.07 -1.02 10.43 24.66 0.26 -0.77 16 23 C -0.10 -0.95 6.80 30.52 0.21 -0.74 16 24 C -0.12 -1.05 7.16 31.67 0.23 -0.83 16 25 C -0.09 -1.15 4.88 30.52 0.15 -1.00 16 26 C 0.10 1.79 7.18 83.27 0.60 2.39 16 27 H 0.06 0.89 6.41 -2.39 -0.02 0.88 16 28 H 0.04 0.85 7.57 -2.39 -0.02 0.83 16 29 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.09 1.39 6.44 -2.39 -0.02 1.37 16 31 H 0.11 0.98 6.21 -2.39 -0.01 0.97 16 32 H 0.11 3.69 7.58 -2.39 -0.02 3.67 16 33 H 0.11 3.63 7.47 -2.39 -0.02 3.61 16 34 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 35 H 0.11 2.94 7.34 -2.39 -0.02 2.92 16 36 H 0.10 1.48 6.34 -2.39 -0.02 1.47 16 37 H 0.12 1.33 7.33 -2.39 -0.02 1.31 16 38 H 0.13 2.18 8.04 -2.91 -0.02 2.15 16 39 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.08 1.05 7.67 -2.39 -0.02 1.03 16 44 H 0.08 0.93 6.94 -2.39 -0.02 0.91 16 45 H 0.12 1.64 5.32 -2.39 -0.01 1.62 16 46 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -81.02 383.50 2.72 -78.30 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.99 Total: 15.43 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 6.03 Total: 1.85 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -5.05 Total: -86.85 kcal Atomic # 8 Polarization: -43.79 SS G_CDS: -0.12 Total: -43.91 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.16 Total: -9.45 kcal Total: -81.02 2.72 -78.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079342715.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.566 kcal (2) G-P(sol) polarization free energy of solvation -81.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds