Wall clock time and date at job start Tue Mar 31 2020 21:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46974 * 2 1 4 4 C 1.34773 * 120.00085 * 269.99635 * 3 2 1 5 5 O 1.21287 * 120.00260 * 179.97438 * 4 3 2 6 6 C 1.50704 * 119.99878 * 0.02562 * 4 3 2 7 7 S 1.81004 * 109.47043 * 179.97438 * 6 4 3 8 8 C 1.76203 * 99.99726 * 179.97438 * 7 6 4 9 9 H 1.07997 * 120.00212 * 359.97438 * 8 7 6 10 10 C 1.38798 * 119.99507 * 180.02562 * 8 7 6 11 11 N 1.31632 * 120.00555 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99718 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47076 * 0.02562 * 12 10 8 14 14 H 1.48509 * 109.47017 * 119.99965 * 12 10 8 15 15 H 1.48502 * 109.47427 * 239.99802 * 12 10 8 16 16 C 1.46503 * 120.00056 * 90.00142 * 3 2 1 17 17 C 1.53500 * 114.20686 * 120.00214 * 16 3 2 18 18 N 1.47063 * 87.98453 * 87.71679 * 17 16 3 19 19 C 1.34778 * 136.05078 * 207.08195 * 18 17 16 20 20 O 1.21277 * 120.00426 * 0.02562 * 19 18 17 21 21 C 1.50706 * 119.99906 * 179.97438 * 19 18 17 22 22 H 1.08998 * 115.54512 * 34.41796 * 21 19 18 23 23 C 1.52995 * 117.50181 * 248.75034 * 21 19 18 24 24 C 1.52993 * 117.50081 * 180.08799 * 21 19 18 25 25 C 1.52992 * 138.58906 * 336.60314 * 24 21 19 26 26 C 1.52996 * 138.58947 * 238.38409 * 24 21 19 27 27 C 1.47060 * 87.89017 * 27.33957 * 18 17 16 28 28 H 1.09003 * 109.46633 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47278 * 299.99897 * 1 2 3 30 30 H 1.08999 * 109.46740 * 60.00199 * 1 2 3 31 31 H 1.08999 * 109.47278 * 240.00103 * 2 1 3 32 32 H 1.08997 * 109.47454 * 119.99603 * 2 1 3 33 33 H 1.09001 * 109.47093 * 299.99713 * 6 4 3 34 34 H 1.08995 * 109.47272 * 60.00000 * 6 4 3 35 35 H 0.96997 * 119.99991 * 180.02562 * 11 10 8 36 36 H 1.09000 * 113.28157 * 346.93225 * 16 3 2 37 37 H 1.08999 * 113.46823 * 332.93234 * 17 16 3 38 38 H 1.09001 * 113.46433 * 202.49842 * 17 16 3 39 39 H 1.09007 * 117.50112 * 359.97438 * 23 21 19 40 40 H 1.08997 * 117.50394 * 145.01912 * 23 21 19 41 41 H 1.09003 * 117.49662 * 336.59459 * 25 24 21 42 42 H 1.08994 * 117.49984 * 121.61402 * 25 24 21 43 43 H 1.09000 * 117.49782 * 238.38444 * 26 24 21 44 44 H 1.09001 * 117.49417 * 23.40396 * 26 24 21 45 45 H 1.09003 * 113.46438 * 87.43788 * 27 18 17 46 46 H 1.08997 * 113.47179 * 217.87529 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0165 -1.1672 5 8 2.6468 3.1602 -1.1672 6 6 1.9914 1.3063 -2.4723 7 16 2.3829 2.4154 -3.8481 8 6 2.0098 1.3592 -5.2082 9 1 1.6555 0.3546 -5.0305 10 6 2.1723 1.8181 -6.5080 11 7 2.6046 3.0424 -6.7247 12 14 1.7774 0.6982 -7.9500 13 1 1.3121 -0.6174 -7.4421 14 1 0.7094 1.3146 -8.7776 15 1 2.9961 0.5072 -8.7768 16 6 2.2625 2.0718 1.2687 17 6 3.7126 2.5360 1.4637 18 7 3.3526 3.7813 0.7690 19 6 4.0019 4.7028 0.0303 20 8 5.1892 4.5808 -0.1848 21 6 3.2523 5.8843 -0.5294 22 1 2.4470 6.2693 0.0962 23 6 3.0590 5.9444 -2.0459 24 6 4.0450 6.8942 -1.3614 25 6 5.4930 7.3597 -1.5266 26 6 4.3750 8.3881 -1.3437 27 6 1.9740 3.5819 1.2406 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 2.6213 0.4186 -2.5302 34 1 0.9433 1.0125 -2.5299 35 1 2.7178 3.3631 -7.6331 36 1 1.8393 1.5540 2.1295 37 1 4.4388 1.9306 0.9214 38 1 3.9838 2.6848 2.5089 39 1 3.4744 5.1295 -2.6390 40 1 2.1268 6.3693 -2.4181 41 1 6.1718 7.1997 -0.6889 42 1 5.9397 7.2728 -2.5170 43 1 4.0861 8.9777 -2.2138 44 1 4.3181 8.9046 -0.3855 45 1 1.7870 4.0065 2.2269 46 1 1.2191 3.8675 0.5081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079344503.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:25 Heat of formation + Delta-G solvation = 65.980862 kcal Electronic energy + Delta-G solvation = -28327.381673 eV Core-core repulsion = 24541.511814 eV Total energy + Delta-G solvation = -3785.869859 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.02404 -38.92666 -37.57967 -36.39253 -35.47072 -32.42788 -32.21901 -30.55056 -29.56428 -28.18677 -26.08454 -25.49539 -23.71282 -23.27803 -22.11035 -21.85724 -19.44958 -18.67564 -18.12162 -17.60859 -17.04595 -16.57968 -16.21543 -15.48333 -15.10037 -14.81739 -14.77524 -14.66046 -14.40881 -13.99813 -13.87082 -13.42220 -13.37271 -12.97562 -12.80449 -12.62708 -12.48445 -12.15060 -11.84760 -11.77427 -11.66519 -11.29009 -11.18323 -11.15469 -11.06503 -11.00923 -10.94963 -10.75899 -9.79854 -9.75469 -9.68905 -9.56387 -9.29762 -9.13332 -9.07191 -8.60139 -8.21604 -7.99936 -6.48083 -6.22001 -3.91353 2.83191 3.00531 3.09204 3.18366 3.20807 3.24477 3.30026 3.57066 4.04551 4.20254 4.23036 4.30254 4.59843 4.71538 4.85641 4.92839 5.05548 5.13167 5.16070 5.17051 5.26029 5.31720 5.33326 5.38117 5.50858 5.56803 5.64066 5.70650 5.74663 5.77622 5.80547 5.84955 5.92302 5.93596 5.98403 6.03397 6.20043 6.20588 6.24231 6.40953 6.43737 6.69478 6.85418 7.52937 7.59748 8.17688 8.34977 8.63612 8.79386 9.23927 10.85242 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008878 B = 0.004887 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3153.146906 B = 5727.883432 C = 8371.428869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.110 3.890 3 N -0.605 5.605 4 C 0.529 3.471 5 O -0.487 6.487 6 C -0.150 4.150 7 S -0.056 6.056 8 C -0.535 4.535 9 H 0.071 0.929 10 C 0.075 3.925 11 N -0.866 5.866 12 Si 0.916 3.084 13 H -0.272 1.272 14 H -0.280 1.280 15 H -0.280 1.280 16 C 0.113 3.887 17 C 0.087 3.913 18 N -0.613 5.613 19 C 0.608 3.392 20 O -0.550 6.550 21 C -0.121 4.121 22 H 0.106 0.894 23 C -0.069 4.069 24 C -0.209 4.209 25 C -0.115 4.115 26 C -0.136 4.136 27 C 0.097 3.903 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.267 0.733 36 H 0.113 0.887 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.118 0.882 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.191 -0.578 18.868 19.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.013 4.013 3 N -0.341 5.341 4 C 0.316 3.684 5 O -0.359 6.359 6 C -0.300 4.300 7 S 0.171 5.829 8 C -0.683 4.683 9 H 0.089 0.911 10 C -0.135 4.135 11 N -0.502 5.502 12 Si 0.742 3.258 13 H -0.197 1.197 14 H -0.206 1.206 15 H -0.206 1.206 16 C 0.007 3.993 17 C -0.038 4.038 18 N -0.348 5.348 19 C 0.400 3.600 20 O -0.427 6.427 21 C -0.142 4.142 22 H 0.124 0.876 23 C -0.106 4.106 24 C -0.210 4.210 25 C -0.152 4.152 26 C -0.172 4.172 27 C -0.028 4.028 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.077 0.923 36 H 0.131 0.869 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.136 0.864 40 H 0.116 0.884 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.107 0.893 45 H 0.102 0.898 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.772 1.371 18.448 18.706 hybrid contribution -0.952 -2.286 -0.829 2.611 sum -3.725 -0.914 17.620 18.032 Atomic orbital electron populations 1.22229 0.95907 1.02171 1.02700 1.21533 0.94398 0.82107 1.03287 1.47727 1.67877 1.14076 1.04374 1.20334 0.76639 0.87091 0.84289 1.90717 1.41928 1.16995 1.86283 1.23597 1.04379 1.04509 0.97521 1.85248 1.86940 1.17639 0.93097 1.22896 1.51580 1.01517 0.92321 0.91091 1.24960 0.94686 0.95496 0.98308 1.70017 1.43038 1.15594 1.21511 0.86163 0.78180 0.80145 0.81286 1.19667 1.20592 1.20588 1.22310 0.96263 0.93406 0.87363 1.23366 0.97587 0.85731 0.97102 1.48961 1.10697 1.24434 1.50737 1.18696 0.85400 0.80540 0.75384 1.90644 1.15726 1.76974 1.59377 1.21610 1.00700 0.95107 0.96784 0.87599 1.22632 0.98026 0.98770 0.91182 1.21307 0.98947 0.94330 1.06411 1.22493 0.89765 1.00193 1.02716 1.22692 1.02773 0.89501 1.02264 1.23203 0.86933 0.93370 0.99249 0.91663 0.92457 0.91955 0.89927 0.90587 0.89822 0.89568 0.92283 0.86930 0.90681 0.89730 0.86409 0.88449 0.88855 0.88685 0.88645 0.89261 0.89822 0.89789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 10.24 37.16 0.38 -1.07 16 2 C 0.11 1.02 5.95 -4.04 -0.02 1.00 16 3 N -0.60 -7.42 2.74 -165.73 -0.45 -7.87 16 4 C 0.53 9.12 7.26 -10.99 -0.08 9.04 16 5 O -0.49 -9.53 7.90 5.55 0.04 -9.48 16 6 C -0.15 -2.91 4.71 36.01 0.17 -2.74 16 7 S -0.06 -1.46 20.57 -107.50 -2.21 -3.67 16 8 C -0.53 -15.00 9.50 30.94 0.29 -14.70 16 9 H 0.07 1.90 7.80 -52.49 -0.41 1.50 16 10 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 11 N -0.87 -25.83 13.22 55.49 0.73 -25.09 16 12 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16 13 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 16 C 0.11 1.11 4.87 -67.67 -0.33 0.78 16 17 C 0.09 1.05 8.18 -8.50 -0.07 0.98 16 18 N -0.61 -9.34 2.09 -185.06 -0.39 -9.72 16 19 C 0.61 11.52 5.72 -10.98 -0.06 11.46 16 20 O -0.55 -12.55 17.02 5.56 0.09 -12.46 16 21 C -0.12 -2.07 5.64 -91.77 -0.52 -2.59 16 22 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 23 C -0.07 -1.29 9.37 -26.70 -0.25 -1.54 16 24 C -0.21 -3.56 5.06 -154.48 -0.78 -4.35 16 25 C -0.11 -1.83 10.16 -26.73 -0.27 -2.10 16 26 C -0.14 -1.84 10.53 -26.73 -0.28 -2.12 16 27 C 0.10 1.07 7.36 -8.37 -0.06 1.01 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.66 7.22 -51.93 -0.37 0.29 16 31 H 0.08 0.85 6.44 -51.93 -0.33 0.52 16 32 H 0.08 0.52 8.07 -51.93 -0.42 0.10 16 33 H 0.08 1.58 7.40 -51.92 -0.38 1.20 16 34 H 0.09 1.57 7.18 -51.92 -0.37 1.20 16 35 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.11 0.67 8.10 -51.93 -0.42 0.25 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.12 2.70 7.84 -51.93 -0.41 2.29 16 40 H 0.10 1.69 8.14 -51.93 -0.42 1.26 16 41 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 42 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 43 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.08 1.08 7.38 -51.93 -0.38 0.69 16 LS Contribution 389.78 15.07 5.87 5.87 Total: -1.00 -35.89 389.78 -10.60 -46.50 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -7.29 Total: 4.55 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -1.98 Total: -4.93 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: -0.11 Total: -42.69 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: 0.14 Total: -21.94 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.21 Total: -3.67 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.89 -10.60 -46.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079344503.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.478 kcal (2) G-P(sol) polarization free energy of solvation -35.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds