Wall clock time and date at job start Tue Mar 31 2020 21:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46974 * 2 1 4 4 C 1.34773 * 120.00085 * 269.99635 * 3 2 1 5 5 O 1.21287 * 120.00260 * 179.97438 * 4 3 2 6 6 C 1.50704 * 119.99878 * 0.02562 * 4 3 2 7 7 S 1.81004 * 109.47043 * 179.97438 * 6 4 3 8 8 C 1.76203 * 99.99726 * 179.97438 * 7 6 4 9 9 H 1.07997 * 120.00212 * 359.97438 * 8 7 6 10 10 C 1.38798 * 119.99507 * 180.02562 * 8 7 6 11 11 N 1.31632 * 120.00555 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99718 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47076 * 0.02562 * 12 10 8 14 14 H 1.48509 * 109.47017 * 119.99965 * 12 10 8 15 15 H 1.48502 * 109.47427 * 239.99802 * 12 10 8 16 16 C 1.46503 * 120.00056 * 90.00142 * 3 2 1 17 17 C 1.53500 * 114.20686 * 120.00214 * 16 3 2 18 18 N 1.47063 * 87.98453 * 87.71679 * 17 16 3 19 19 C 1.34778 * 136.05078 * 207.08195 * 18 17 16 20 20 O 1.21277 * 120.00426 * 0.02562 * 19 18 17 21 21 C 1.50706 * 119.99906 * 179.97438 * 19 18 17 22 22 H 1.08998 * 115.54512 * 34.41796 * 21 19 18 23 23 C 1.52995 * 117.50181 * 248.75034 * 21 19 18 24 24 C 1.52993 * 117.50081 * 180.08799 * 21 19 18 25 25 C 1.52992 * 138.58906 * 336.60314 * 24 21 19 26 26 C 1.52996 * 138.58947 * 238.38409 * 24 21 19 27 27 C 1.47060 * 87.89017 * 27.33957 * 18 17 16 28 28 H 1.09003 * 109.46633 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47278 * 299.99897 * 1 2 3 30 30 H 1.08999 * 109.46740 * 60.00199 * 1 2 3 31 31 H 1.08999 * 109.47278 * 240.00103 * 2 1 3 32 32 H 1.08997 * 109.47454 * 119.99603 * 2 1 3 33 33 H 1.09001 * 109.47093 * 299.99713 * 6 4 3 34 34 H 1.08995 * 109.47272 * 60.00000 * 6 4 3 35 35 H 0.96997 * 119.99991 * 180.02562 * 11 10 8 36 36 H 1.09000 * 113.28157 * 346.93225 * 16 3 2 37 37 H 1.08999 * 113.46823 * 332.93234 * 17 16 3 38 38 H 1.09001 * 113.46433 * 202.49842 * 17 16 3 39 39 H 1.09007 * 117.50112 * 359.97438 * 23 21 19 40 40 H 1.08997 * 117.50394 * 145.01912 * 23 21 19 41 41 H 1.09003 * 117.49662 * 336.59459 * 25 24 21 42 42 H 1.08994 * 117.49984 * 121.61402 * 25 24 21 43 43 H 1.09000 * 117.49782 * 238.38444 * 26 24 21 44 44 H 1.09001 * 117.49417 * 23.40396 * 26 24 21 45 45 H 1.09003 * 113.46438 * 87.43788 * 27 18 17 46 46 H 1.08997 * 113.47179 * 217.87529 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0165 -1.1672 5 8 2.6468 3.1602 -1.1672 6 6 1.9914 1.3063 -2.4723 7 16 2.3829 2.4154 -3.8481 8 6 2.0098 1.3592 -5.2082 9 1 1.6555 0.3546 -5.0305 10 6 2.1723 1.8181 -6.5080 11 7 2.6046 3.0424 -6.7247 12 14 1.7774 0.6982 -7.9500 13 1 1.3121 -0.6174 -7.4421 14 1 0.7094 1.3146 -8.7776 15 1 2.9961 0.5072 -8.7768 16 6 2.2625 2.0718 1.2687 17 6 3.7126 2.5360 1.4637 18 7 3.3526 3.7813 0.7690 19 6 4.0019 4.7028 0.0303 20 8 5.1892 4.5808 -0.1848 21 6 3.2523 5.8843 -0.5294 22 1 2.4470 6.2693 0.0962 23 6 3.0590 5.9444 -2.0459 24 6 4.0450 6.8942 -1.3614 25 6 5.4930 7.3597 -1.5266 26 6 4.3750 8.3881 -1.3437 27 6 1.9740 3.5819 1.2406 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 2.6213 0.4186 -2.5302 34 1 0.9433 1.0125 -2.5299 35 1 2.7178 3.3631 -7.6331 36 1 1.8393 1.5540 2.1295 37 1 4.4388 1.9306 0.9214 38 1 3.9838 2.6848 2.5089 39 1 3.4744 5.1295 -2.6390 40 1 2.1268 6.3693 -2.4181 41 1 6.1718 7.1997 -0.6889 42 1 5.9397 7.2728 -2.5170 43 1 4.0861 8.9777 -2.2138 44 1 4.3181 8.9046 -0.3855 45 1 1.7870 4.0065 2.2269 46 1 1.2191 3.8675 0.5081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079344503.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:24 Heat of formation + Delta-G solvation = 43.642599 kcal Electronic energy + Delta-G solvation = -28328.350333 eV Core-core repulsion = 24541.511814 eV Total energy + Delta-G solvation = -3786.838519 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.13487 -40.27080 -38.81118 -37.74656 -36.55317 -34.59460 -33.53164 -31.50449 -30.96470 -29.40425 -27.67976 -27.01802 -24.98668 -24.13617 -23.29702 -23.04279 -20.80087 -20.13607 -19.51222 -19.02922 -18.32259 -17.80586 -17.35430 -16.89674 -16.74518 -16.37996 -16.13350 -15.88316 -15.80014 -15.59533 -14.77447 -14.61109 -14.59884 -14.48950 -14.23825 -13.92076 -13.39655 -13.36836 -13.18293 -13.06813 -12.93841 -12.84895 -12.63180 -12.56038 -12.55054 -12.37391 -11.99353 -11.89012 -11.70279 -11.16920 -11.09059 -11.01732 -10.87535 -10.62765 -10.49662 -10.21234 -9.66605 -9.17366 -8.62076 -8.35754 -6.11039 1.26158 1.37389 1.44940 1.55498 1.65378 1.80385 1.97649 2.12069 2.27377 2.82153 2.91716 2.98111 3.27213 3.39536 3.41212 3.60867 3.85777 3.96224 4.05979 4.09670 4.18832 4.23990 4.37354 4.44760 4.49102 4.51560 4.54421 4.60557 4.63502 4.68952 4.71370 4.75741 4.76871 4.81104 4.89587 4.98701 5.05684 5.07225 5.13701 5.24103 5.30400 5.39594 5.44026 5.78608 6.17767 6.37211 6.96726 7.05878 7.34909 7.44402 8.72990 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008878 B = 0.004887 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3153.146906 B = 5727.883432 C = 8371.428869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.104 3.896 3 N -0.594 5.594 4 C 0.521 3.479 5 O -0.515 6.515 6 C -0.125 4.125 7 S -0.134 6.134 8 C -0.548 4.548 9 H 0.076 0.924 10 C 0.016 3.984 11 N -0.909 5.909 12 Si 0.993 3.007 13 H -0.258 1.258 14 H -0.272 1.272 15 H -0.276 1.276 16 C 0.125 3.875 17 C 0.081 3.919 18 N -0.623 5.623 19 C 0.594 3.406 20 O -0.608 6.608 21 C -0.108 4.108 22 H 0.134 0.866 23 C -0.084 4.084 24 C -0.232 4.232 25 C -0.133 4.133 26 C -0.094 4.094 27 C 0.098 3.902 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.032 0.968 31 H 0.066 0.934 32 H 0.117 0.883 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.270 0.730 36 H 0.177 0.823 37 H 0.041 0.959 38 H 0.125 0.875 39 H 0.064 0.936 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.112 0.888 44 H 0.118 0.882 45 H 0.132 0.868 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.265 -1.872 21.990 22.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.018 4.018 3 N -0.329 5.329 4 C 0.308 3.692 5 O -0.389 6.389 6 C -0.276 4.276 7 S 0.094 5.906 8 C -0.696 4.696 9 H 0.094 0.906 10 C -0.189 4.189 11 N -0.546 5.546 12 Si 0.815 3.185 13 H -0.181 1.181 14 H -0.197 1.197 15 H -0.202 1.202 16 C 0.021 3.979 17 C -0.043 4.043 18 N -0.356 5.356 19 C 0.386 3.614 20 O -0.491 6.491 21 C -0.129 4.129 22 H 0.151 0.849 23 C -0.122 4.122 24 C -0.233 4.233 25 C -0.170 4.170 26 C -0.131 4.131 27 C -0.025 4.025 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.051 0.949 31 H 0.085 0.915 32 H 0.135 0.865 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.079 0.921 36 H 0.194 0.806 37 H 0.060 0.940 38 H 0.143 0.857 39 H 0.083 0.917 40 H 0.122 0.878 41 H 0.107 0.893 42 H 0.104 0.896 43 H 0.130 0.870 44 H 0.136 0.864 45 H 0.149 0.851 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.911 0.017 21.638 22.188 hybrid contribution -0.319 -1.987 -1.668 2.614 sum -5.230 -1.970 19.970 20.737 Atomic orbital electron populations 1.22171 0.94838 1.03201 1.02126 1.21820 0.95161 0.80220 1.04586 1.47702 1.66305 1.15127 1.03717 1.20031 0.77221 0.86864 0.85113 1.90750 1.43310 1.18091 1.86778 1.23419 1.04938 1.02846 0.96437 1.85452 1.87600 1.21075 0.96517 1.23237 1.51436 1.01750 0.93178 0.90587 1.26048 0.94254 0.97067 1.01523 1.70184 1.44358 1.17785 1.22260 0.84988 0.78097 0.78319 0.77068 1.18145 1.19700 1.20161 1.22627 0.94589 0.93292 0.87410 1.23717 0.98286 0.83981 0.98310 1.49144 1.12880 1.24072 1.49465 1.19001 0.84961 0.81646 0.75789 1.90590 1.18115 1.78532 1.61852 1.21642 1.00991 0.94830 0.95448 0.84861 1.22250 0.98951 0.98643 0.92343 1.21546 0.99465 0.97017 1.05262 1.22534 0.89863 1.02396 1.02164 1.22850 0.98513 0.87385 1.04311 1.23554 0.83993 0.94297 1.00675 0.89853 0.90617 0.94889 0.91503 0.86527 0.89506 0.88354 0.92126 0.80594 0.94031 0.85704 0.91747 0.87783 0.89260 0.89600 0.87024 0.86411 0.85066 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.24 71.98 0.74 -1.48 16 2 C 0.10 1.58 5.95 86.38 0.51 2.10 16 3 N -0.59 -13.24 2.74 -796.63 -2.19 -15.43 16 4 C 0.52 18.25 7.26 87.66 0.64 18.89 16 5 O -0.51 -21.07 7.90 -3.05 -0.02 -21.09 16 6 C -0.13 -5.04 4.71 71.24 0.34 -4.71 16 7 S -0.13 -7.42 20.57 -56.49 -1.16 -8.58 16 8 C -0.55 -31.84 9.50 67.95 0.65 -31.19 16 9 H 0.08 4.16 7.80 -2.91 -0.02 4.14 16 10 C 0.02 0.92 5.49 84.86 0.47 1.39 16 11 N -0.91 -56.66 13.22 21.65 0.29 -56.37 16 12 Si 0.99 44.51 29.55 68.60 2.03 46.54 16 13 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 14 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 15 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 16 C 0.13 1.94 4.87 45.55 0.22 2.16 16 17 C 0.08 1.76 8.18 83.18 0.68 2.44 16 18 N -0.62 -18.48 2.09 -857.80 -1.79 -20.27 16 19 C 0.59 23.36 5.72 87.66 0.50 23.86 16 20 O -0.61 -29.62 17.02 -3.02 -0.05 -29.67 16 21 C -0.11 -3.83 5.64 -11.54 -0.07 -3.90 16 22 H 0.13 3.81 8.14 -2.39 -0.02 3.79 16 23 C -0.08 -3.43 9.37 30.62 0.29 -3.15 16 24 C -0.23 -8.21 5.06 -52.16 -0.26 -8.47 16 25 C -0.13 -4.42 10.16 30.59 0.31 -4.11 16 26 C -0.09 -2.45 10.53 30.59 0.32 -2.13 16 27 C 0.10 1.84 7.36 83.27 0.61 2.45 16 28 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.03 0.64 7.22 -2.39 -0.02 0.62 16 31 H 0.07 1.26 6.44 -2.39 -0.02 1.24 16 32 H 0.12 0.93 8.07 -2.39 -0.02 0.91 16 33 H 0.09 3.39 7.40 -2.39 -0.02 3.37 16 34 H 0.10 3.66 7.18 -2.40 -0.02 3.65 16 35 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 36 H 0.18 0.72 8.10 -2.39 -0.02 0.70 16 37 H 0.04 1.19 8.14 -2.39 -0.02 1.18 16 38 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.06 3.32 7.84 -2.38 -0.02 3.30 16 40 H 0.10 3.91 8.14 -2.39 -0.02 3.89 16 41 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 42 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 43 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 44 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.06 1.52 7.38 -2.39 -0.02 1.50 16 Total: -1.00 -88.64 389.78 4.01 -84.63 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: 0.97 Total: 26.11 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 5.94 Total: -5.85 kcal Atomic # 7 Polarization: -88.38 SS G_CDS: -3.69 Total: -92.07 kcal Atomic # 8 Polarization: -50.69 SS G_CDS: -0.08 Total: -50.77 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: -7.42 SS G_CDS: -1.16 Total: -8.58 kcal Total: -88.64 4.01 -84.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079344503.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.268 kcal (2) G-P(sol) polarization free energy of solvation -88.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds