Wall clock time and date at job start Tue Mar 31 2020 21:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47343 * 2 1 4 4 C 1.34777 * 120.00015 * 270.00326 * 3 2 1 5 5 O 1.21613 * 120.00159 * 179.97438 * 4 3 2 6 6 C 1.47108 * 119.99770 * 359.97438 * 4 3 2 7 7 C 1.32995 * 119.99489 * 180.02562 * 6 4 3 8 8 C 1.50705 * 119.99739 * 180.02562 * 7 6 4 9 9 C 1.52994 * 117.50000 * 188.74583 * 8 7 6 10 10 C 1.52992 * 117.50117 * 120.08103 * 8 7 6 11 11 C 1.46497 * 119.99941 * 89.99995 * 3 2 1 12 12 C 1.53501 * 114.20643 * 120.00608 * 11 3 2 13 13 N 1.47065 * 87.98741 * 87.51773 * 12 11 3 14 14 C 1.34775 * 136.05752 * 207.08848 * 13 12 11 15 15 O 1.21276 * 119.99984 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00022 * 180.02562 * 14 13 12 17 17 S 1.80998 * 109.47116 * 179.97438 * 16 14 13 18 18 C 1.76199 * 100.00013 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00250 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00102 * 179.72368 * 18 17 16 21 21 N 1.31634 * 120.00298 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99861 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47644 * 89.99884 * 22 20 18 24 24 H 1.48506 * 109.47143 * 209.99830 * 22 20 18 25 25 H 1.48501 * 109.47120 * 329.99545 * 22 20 18 26 26 C 1.47067 * 87.88381 * 27.34024 * 13 12 11 27 27 H 1.09001 * 109.47117 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47244 * 299.99744 * 1 2 3 29 29 H 1.08999 * 109.47292 * 59.99735 * 1 2 3 30 30 H 1.09003 * 109.47244 * 240.00256 * 2 1 3 31 31 H 1.09001 * 109.47791 * 119.99686 * 2 1 3 32 32 H 1.07999 * 120.00047 * 359.97438 * 6 4 3 33 33 H 1.07999 * 120.00465 * 359.97438 * 7 6 4 34 34 H 1.09002 * 115.54368 * 334.41057 * 8 7 6 35 35 H 1.09000 * 117.49712 * 359.97438 * 9 8 7 36 36 H 1.08999 * 117.50415 * 145.02028 * 9 8 7 37 37 H 1.09003 * 117.50334 * 214.97737 * 10 8 7 38 38 H 1.09002 * 117.50363 * 359.97438 * 10 8 7 39 39 H 1.08999 * 113.28436 * 346.93404 * 11 3 2 40 40 H 1.09001 * 113.46643 * 332.73474 * 12 11 3 41 41 H 1.08996 * 113.46488 * 202.29934 * 12 11 3 42 42 H 1.09001 * 109.47434 * 59.99478 * 16 14 13 43 43 H 1.08999 * 109.47072 * 299.99957 * 16 14 13 44 44 H 0.96995 * 120.00138 * 180.02562 * 21 20 18 45 45 H 1.09010 * 113.46411 * 87.43777 * 26 13 12 46 46 H 1.08997 * 113.47100 * 217.87349 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0166 -1.1672 5 8 2.6479 3.1633 -1.1672 6 6 1.9982 1.3229 -2.4412 7 6 2.2203 1.9497 -3.5929 8 6 1.9690 1.2394 -4.8981 9 6 2.4335 1.9325 -6.1805 10 6 0.9409 1.8535 -5.8502 11 6 2.2625 2.0718 1.2687 12 6 3.7126 2.5360 1.4637 13 7 3.3540 3.7791 0.7646 14 6 4.0044 4.6979 0.0235 15 8 5.1920 4.5751 -0.1893 16 6 3.2561 5.8785 -0.5398 17 16 4.3967 6.9231 -1.4800 18 6 3.2888 8.1870 -2.0088 19 1 2.2472 8.1448 -1.7268 20 6 3.7561 9.2402 -2.7827 21 7 2.9284 10.1843 -3.1782 22 14 5.5593 9.3173 -3.2642 23 1 5.7583 8.6079 -4.5534 24 1 5.9723 10.7362 -3.4111 25 1 6.3811 8.6692 -2.2106 26 6 1.9748 3.5818 1.2354 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6389 0.3044 -2.4411 33 1 2.5799 2.9681 -3.5929 34 1 2.0346 0.1519 -4.8615 35 1 2.9205 2.9025 -6.0802 36 1 2.8043 1.3011 -6.9879 37 1 0.3304 1.1702 -6.4405 38 1 0.4459 2.7712 -5.5325 39 1 1.8394 1.5540 2.1295 40 1 4.4391 1.9285 0.9240 41 1 3.9828 2.6881 2.5086 42 1 2.8228 6.4570 0.2761 43 1 2.4612 5.5251 -1.1966 44 1 3.2548 10.9201 -3.7193 45 1 1.7869 4.0097 2.2202 46 1 1.2207 3.8654 0.5013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079552784.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:36 Heat of formation + Delta-G solvation = 47.208646 kcal Electronic energy + Delta-G solvation = -27665.379703 eV Core-core repulsion = 23878.695820 eV Total energy + Delta-G solvation = -3786.683883 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.19648 -38.71386 -37.72042 -36.97083 -35.77034 -32.39604 -32.32172 -30.96918 -29.73754 -27.72150 -25.93145 -25.48437 -25.02434 -23.44428 -22.55882 -22.21056 -20.14977 -19.03773 -18.44412 -17.68621 -17.39822 -16.61189 -16.27099 -15.64499 -15.45664 -15.34210 -14.98914 -14.73469 -14.41723 -14.25736 -13.79871 -13.65480 -13.37570 -13.04041 -12.81205 -12.73238 -12.63593 -12.50197 -12.21298 -11.99967 -11.78336 -11.66172 -11.63486 -11.42055 -11.24701 -11.14467 -11.02017 -10.90507 -10.62678 -10.41501 -9.74042 -9.68707 -9.22308 -9.11012 -8.88648 -8.82623 -8.30605 -8.03744 -6.73488 -6.17894 -3.86164 1.27848 2.69639 2.89799 3.19263 3.33372 3.41325 3.47098 3.60501 3.75934 3.78851 4.17067 4.24965 4.44108 4.50244 4.67099 4.68390 4.76861 4.80160 4.87975 4.91779 4.94651 5.00780 5.12304 5.18078 5.21249 5.28747 5.32991 5.41232 5.44244 5.46041 5.56558 5.61079 5.69116 5.74195 5.82129 5.87400 5.96008 6.11249 6.19476 6.29006 6.35866 6.41090 6.51820 7.27196 8.05707 8.19920 8.29479 8.53500 8.90430 9.29253 10.91651 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009529 B = 0.004044 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.549598 B = 6921.852133 C = 8977.635849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.109 3.891 3 N -0.599 5.599 4 C 0.541 3.459 5 O -0.502 6.502 6 C -0.224 4.224 7 C -0.025 4.025 8 C -0.143 4.143 9 C -0.170 4.170 10 C -0.165 4.165 11 C 0.109 3.891 12 C 0.090 3.910 13 N -0.619 5.619 14 C 0.594 3.406 15 O -0.538 6.538 16 C -0.101 4.101 17 S -0.149 6.149 18 C -0.514 4.514 19 H 0.085 0.915 20 C 0.095 3.905 21 N -0.885 5.885 22 Si 0.856 3.144 23 H -0.268 1.268 24 H -0.276 1.276 25 H -0.235 1.235 26 C 0.099 3.901 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.123 0.877 33 H 0.132 0.868 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.116 0.884 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.269 0.731 45 H 0.088 0.912 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.149 -26.615 5.592 28.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.014 4.014 3 N -0.332 5.332 4 C 0.331 3.669 5 O -0.377 6.377 6 C -0.245 4.245 7 C -0.045 4.045 8 C -0.161 4.161 9 C -0.207 4.207 10 C -0.202 4.202 11 C 0.003 3.997 12 C -0.036 4.036 13 N -0.356 5.356 14 C 0.385 3.615 15 O -0.414 6.414 16 C -0.251 4.251 17 S 0.077 5.923 18 C -0.662 4.662 19 H 0.104 0.896 20 C -0.113 4.113 21 N -0.522 5.522 22 Si 0.681 3.319 23 H -0.193 1.193 24 H -0.201 1.201 25 H -0.159 1.159 26 C -0.026 4.026 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.141 0.859 33 H 0.150 0.850 34 H 0.130 0.870 35 H 0.122 0.878 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.133 0.867 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.118 0.882 44 H 0.079 0.921 45 H 0.105 0.895 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.072 -25.819 5.020 26.994 hybrid contribution -0.915 0.211 -0.025 0.939 sum -6.987 -25.607 4.995 27.009 Atomic orbital electron populations 1.22243 0.95757 1.02206 1.02900 1.21579 0.94434 0.82035 1.03324 1.47521 1.67068 1.13988 1.04668 1.18639 0.77584 0.86680 0.83992 1.90931 1.42920 1.17059 1.86754 1.22502 1.08558 1.01152 0.92242 1.23223 0.89954 0.99575 0.91728 1.21309 1.06487 0.98783 0.89492 1.23063 0.97258 1.02914 0.97418 1.22991 0.92407 1.03183 1.01611 1.22419 0.96859 0.93629 0.86768 1.23311 0.96840 0.85968 0.97433 1.49115 1.10559 1.24898 1.51010 1.19274 0.85898 0.80801 0.75516 1.90650 1.15440 1.76221 1.59105 1.23077 1.02953 0.96441 1.02675 1.84666 1.15828 1.25570 1.66221 1.22343 0.97430 1.08538 1.37878 0.89649 1.24697 0.98184 0.94157 0.94291 1.69949 1.35106 1.11552 1.35603 0.86732 0.85601 0.78232 0.81287 1.19315 1.20099 1.15918 1.23178 0.87069 0.92691 0.99658 0.91583 0.92167 0.92125 0.90042 0.90298 0.85895 0.84994 0.87028 0.87794 0.88311 0.88313 0.88132 0.86656 0.90885 0.89529 0.89901 0.88228 0.92128 0.89460 0.90097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.86 10.24 37.15 0.38 -0.48 16 2 C 0.11 0.62 5.86 -4.04 -0.02 0.59 16 3 N -0.60 -5.67 2.74 -167.11 -0.46 -6.13 16 4 C 0.54 7.14 7.19 -12.66 -0.09 7.05 16 5 O -0.50 -8.90 8.65 5.27 0.05 -8.85 16 6 C -0.22 -2.46 8.86 -37.80 -0.33 -2.80 16 7 C -0.03 -0.31 9.24 -36.12 -0.33 -0.64 16 8 C -0.14 -1.36 6.00 -91.78 -0.55 -1.91 16 9 C -0.17 -1.64 10.24 -26.70 -0.27 -1.91 16 10 C -0.16 -1.48 10.24 -26.70 -0.27 -1.76 16 11 C 0.11 0.96 4.88 -67.67 -0.33 0.63 16 12 C 0.09 1.07 8.18 -8.51 -0.07 1.00 16 13 N -0.62 -10.12 2.09 -185.08 -0.39 -10.51 16 14 C 0.59 13.02 5.91 -10.99 -0.06 12.95 16 15 O -0.54 -13.83 16.64 5.56 0.09 -13.74 16 16 C -0.10 -2.35 5.82 36.00 0.21 -2.14 16 17 S -0.15 -4.19 18.55 -107.50 -1.99 -6.18 16 18 C -0.51 -15.82 10.04 30.94 0.31 -15.51 16 19 H 0.09 2.75 8.03 -52.49 -0.42 2.33 16 20 C 0.09 2.90 5.50 -17.43 -0.10 2.81 16 21 N -0.88 -27.78 13.97 55.49 0.78 -27.01 16 22 Si 0.86 22.96 27.74 -169.99 -4.72 18.25 16 23 H -0.27 -7.08 7.11 56.52 0.40 -6.67 16 24 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 25 H -0.24 -6.35 6.74 56.52 0.38 -5.97 16 26 C 0.10 1.15 7.36 -8.38 -0.06 1.09 16 27 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.42 6.09 -51.93 -0.32 0.11 16 31 H 0.08 0.31 8.07 -51.93 -0.42 -0.11 16 32 H 0.12 0.97 6.22 -52.49 -0.33 0.64 16 33 H 0.13 2.04 7.49 -52.49 -0.39 1.65 16 34 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.12 0.57 8.10 -51.93 -0.42 0.15 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.08 1.83 8.14 -51.91 -0.42 1.41 16 43 H 0.10 2.33 7.15 -51.92 -0.37 1.96 16 44 H 0.27 7.83 8.31 -40.82 -0.34 7.50 16 45 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 46 H 0.08 1.07 7.36 -51.93 -0.38 0.69 16 LS Contribution 391.42 15.07 5.90 5.90 Total: -1.00 -39.26 391.42 -9.62 -48.88 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -7.28 Total: 0.41 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -1.60 Total: -1.02 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: -0.07 Total: -43.64 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: 0.14 Total: -22.59 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.72 Total: 18.25 kcal Atomic # 16 Polarization: -4.19 SS G_CDS: -1.99 Total: -6.18 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -39.26 -9.62 -48.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079552784.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.091 kcal (2) G-P(sol) polarization free energy of solvation -39.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds