Wall clock time and date at job start Tue Mar 31 2020 21:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47574 * 2 1 4 4 C 1.34768 * 120.00206 * 270.00057 * 3 2 1 5 5 O 1.21614 * 119.99724 * 179.97438 * 4 3 2 6 6 C 1.47103 * 120.00235 * 0.02562 * 4 3 2 7 7 C 1.32988 * 120.00204 * 173.84852 * 6 4 3 8 8 C 1.50701 * 120.00124 * 353.07785 * 7 6 4 9 9 C 1.53001 * 117.50132 * 182.12674 * 8 7 6 10 10 C 1.52995 * 117.50141 * 113.50060 * 8 7 6 11 11 C 1.46507 * 119.99508 * 89.99943 * 3 2 1 12 12 C 1.53497 * 114.20329 * 120.00149 * 11 3 2 13 13 N 1.47067 * 87.98351 * 87.51983 * 12 11 3 14 14 C 1.34782 * 136.05431 * 207.08632 * 13 12 11 15 15 O 1.21272 * 120.00242 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99736 * 179.97438 * 14 13 12 17 17 S 1.80999 * 109.47204 * 179.97438 * 16 14 13 18 18 C 1.76205 * 100.00038 * 179.97438 * 17 16 14 19 19 H 1.07993 * 119.99873 * 0.02562 * 18 17 16 20 20 C 1.38799 * 119.99839 * 179.72208 * 18 17 16 21 21 N 1.31628 * 119.99948 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00023 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47222 * 89.99856 * 22 20 18 24 24 H 1.48497 * 109.47084 * 209.99857 * 22 20 18 25 25 H 1.48498 * 109.47198 * 330.00021 * 22 20 18 26 26 C 1.47059 * 87.88742 * 27.33913 * 13 12 11 27 27 H 1.09004 * 109.46702 * 299.99714 * 1 2 3 28 28 H 1.08994 * 109.46895 * 59.99648 * 1 2 3 29 29 H 1.08994 * 109.47074 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47051 * 239.99871 * 2 1 3 31 31 H 1.09004 * 109.47088 * 120.00479 * 2 1 3 32 32 H 1.07995 * 119.99495 * 353.84484 * 6 4 3 33 33 H 1.07998 * 120.00305 * 173.07641 * 7 6 4 34 34 H 1.08999 * 115.54871 * 327.83207 * 8 7 6 35 35 H 1.08998 * 117.49533 * 359.97438 * 9 8 7 36 36 H 1.08995 * 117.49765 * 145.01783 * 9 8 7 37 37 H 1.09000 * 117.50577 * 214.97975 * 10 8 7 38 38 H 1.09000 * 117.49807 * 359.97438 * 10 8 7 39 39 H 1.08995 * 113.28459 * 346.93868 * 11 3 2 40 40 H 1.08995 * 113.47173 * 332.73715 * 12 11 3 41 41 H 1.09000 * 113.46885 * 202.29358 * 12 11 3 42 42 H 1.09004 * 109.47343 * 59.99650 * 16 14 13 43 43 H 1.09002 * 109.47298 * 300.00258 * 16 14 13 44 44 H 0.97006 * 120.00019 * 180.02562 * 21 20 18 45 45 H 1.09009 * 113.46944 * 87.43720 * 26 13 12 46 46 H 1.08994 * 113.47247 * 217.87672 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2431 2.0165 -1.1671 5 8 2.6481 3.1632 -1.1670 6 6 1.9974 1.3233 -2.4411 7 6 2.1008 1.9861 -3.5894 8 6 2.3153 3.4777 -3.5819 9 6 2.3763 4.1895 -4.9349 10 6 3.6517 4.0020 -4.1108 11 6 2.2626 2.0717 1.2688 12 6 3.7127 2.5356 1.4639 13 7 3.3542 3.7789 0.7648 14 6 4.0047 4.6977 0.0238 15 8 5.1923 4.5749 -0.1890 16 6 3.2563 5.8778 -0.5404 17 16 4.3970 6.9225 -1.4803 18 6 3.2889 8.1858 -2.0103 19 1 2.2472 8.1432 -1.7288 20 6 3.7562 9.2390 -2.7842 21 7 2.9286 10.1830 -3.1797 22 14 5.5598 9.3167 -3.2645 23 1 5.7598 8.6069 -4.5534 24 1 5.9721 10.7356 -3.4117 25 1 6.3811 8.6692 -2.2103 26 6 1.9750 3.5817 1.2356 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.7330 0.2763 -2.4438 33 1 2.0312 1.4553 -4.5274 34 1 1.8576 4.0143 -2.7509 35 1 2.2619 3.5788 -5.8304 36 1 1.9586 5.1945 -4.9941 37 1 4.0732 4.8837 -3.6280 38 1 4.3761 3.2680 -4.4638 39 1 1.8395 1.5539 2.1296 40 1 4.4392 1.9282 0.9242 41 1 3.9830 2.6878 2.5089 42 1 2.8222 6.4564 0.2750 43 1 2.4619 5.5238 -1.1976 44 1 3.2551 10.9188 -3.7209 45 1 1.7871 4.0095 2.2204 46 1 1.2210 3.8654 0.5014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079552785.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:39 Heat of formation + Delta-G solvation = 55.580735 kcal Electronic energy + Delta-G solvation = -28733.703367 eV Core-core repulsion = 24947.382525 eV Total energy + Delta-G solvation = -3786.320842 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.19929 -38.76333 -37.50766 -36.48585 -35.69594 -32.33727 -32.23139 -30.95378 -29.72781 -27.70120 -25.92198 -25.48475 -24.73250 -23.38812 -22.06328 -21.84949 -20.46925 -18.93181 -18.22192 -17.60258 -17.29577 -16.50762 -16.23065 -15.48053 -15.31323 -15.06248 -14.84814 -14.70130 -14.30869 -14.14480 -13.67986 -13.40829 -13.32225 -12.98555 -12.92535 -12.73553 -12.63742 -12.47473 -12.13634 -12.00076 -11.66670 -11.46902 -11.33198 -11.15843 -11.04113 -11.01479 -10.90915 -10.75763 -10.42761 -9.97768 -9.75913 -9.31200 -9.10743 -8.98747 -8.89641 -8.71289 -8.32142 -7.98025 -6.74626 -6.19355 -3.87822 1.38693 2.75428 2.88972 3.25162 3.33013 3.39999 3.49402 3.58733 3.77421 4.21887 4.34656 4.41725 4.43293 4.58281 4.77173 4.80327 4.91713 4.93134 5.01930 5.05262 5.20017 5.24798 5.29079 5.35125 5.37465 5.41592 5.47006 5.50718 5.55441 5.58132 5.64645 5.75308 5.83961 6.05611 6.09106 6.20021 6.26842 6.29267 6.38761 6.48197 6.56365 6.73080 6.84604 7.34841 8.04135 8.21734 8.36645 8.52325 8.91317 9.27865 10.90138 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014606 B = 0.004210 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.545762 B = 6649.537584 C = 7702.091010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.110 3.890 3 N -0.600 5.600 4 C 0.538 3.462 5 O -0.491 6.491 6 C -0.236 4.236 7 C -0.017 4.017 8 C -0.135 4.135 9 C -0.185 4.185 10 C -0.148 4.148 11 C 0.110 3.890 12 C 0.090 3.910 13 N -0.618 5.618 14 C 0.595 3.405 15 O -0.537 6.537 16 C -0.102 4.102 17 S -0.145 6.145 18 C -0.514 4.514 19 H 0.085 0.915 20 C 0.096 3.904 21 N -0.884 5.884 22 Si 0.854 3.146 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.235 1.235 26 C 0.099 3.901 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.131 0.869 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.082 0.918 39 H 0.114 0.886 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.099 0.901 44 H 0.269 0.731 45 H 0.086 0.914 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.210 -24.665 6.899 26.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.013 4.013 3 N -0.335 5.335 4 C 0.329 3.671 5 O -0.365 6.365 6 C -0.257 4.257 7 C -0.036 4.036 8 C -0.153 4.153 9 C -0.222 4.222 10 C -0.186 4.186 11 C 0.004 3.996 12 C -0.035 4.035 13 N -0.355 5.355 14 C 0.386 3.614 15 O -0.413 6.413 16 C -0.252 4.252 17 S 0.082 5.918 18 C -0.662 4.662 19 H 0.103 0.897 20 C -0.112 4.112 21 N -0.521 5.521 22 Si 0.679 3.321 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.159 1.159 26 C -0.026 4.026 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.148 0.852 35 H 0.103 0.897 36 H 0.118 0.882 37 H 0.136 0.864 38 H 0.101 0.899 39 H 0.132 0.868 40 H 0.091 0.909 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.117 0.883 44 H 0.079 0.921 45 H 0.104 0.896 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.127 -23.862 6.327 25.213 hybrid contribution -0.934 0.142 -0.074 0.948 sum -6.061 -23.719 6.253 25.267 Atomic orbital electron populations 1.22235 0.95844 1.02122 1.02841 1.21560 0.94367 0.82198 1.03193 1.47583 1.67250 1.13949 1.04694 1.18672 0.77883 0.86670 0.83845 1.90894 1.42515 1.16818 1.86311 1.22552 1.10133 1.00388 0.92585 1.23217 0.88701 0.94755 0.96967 1.21524 1.03942 0.91460 0.98379 1.23045 1.03439 1.02141 0.93578 1.22977 0.89813 1.03633 1.02133 1.22393 0.96757 0.93569 0.86872 1.23301 0.96910 0.85984 0.97332 1.49108 1.10504 1.24867 1.51013 1.19226 0.85876 0.80732 0.75525 1.90652 1.15433 1.76166 1.59097 1.23103 1.02959 0.96512 1.02659 1.84666 1.15755 1.25451 1.65921 1.22332 0.97358 1.08683 1.37824 0.89704 1.24680 0.98042 0.94161 0.94318 1.69948 1.35094 1.11522 1.35550 0.86768 0.85721 0.78286 0.81314 1.19245 1.20165 1.15935 1.23169 0.87063 0.92777 0.99574 0.92230 0.92152 0.91676 0.90113 0.90458 0.85860 0.86122 0.85199 0.89659 0.88172 0.86360 0.89898 0.86845 0.90914 0.89686 0.90089 0.88296 0.92139 0.89614 0.90136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.86 10.24 37.16 0.38 -0.48 16 2 C 0.11 0.62 5.90 -4.04 -0.02 0.59 16 3 N -0.60 -5.53 2.74 -167.11 -0.46 -5.99 16 4 C 0.54 6.83 7.09 -12.67 -0.09 6.74 16 5 O -0.49 -8.05 5.74 5.27 0.03 -8.02 16 6 C -0.24 -2.54 9.24 -37.81 -0.35 -2.89 16 7 C -0.02 -0.20 9.74 -36.13 -0.35 -0.55 16 8 C -0.14 -2.11 4.37 -91.77 -0.40 -2.51 16 9 C -0.19 -2.85 10.23 -26.73 -0.27 -3.12 16 10 C -0.15 -2.60 10.23 -26.73 -0.27 -2.88 16 11 C 0.11 0.94 4.88 -67.67 -0.33 0.61 16 12 C 0.09 1.05 8.18 -8.51 -0.07 0.98 16 13 N -0.62 -9.73 2.09 -185.08 -0.39 -10.11 16 14 C 0.60 12.51 5.91 -10.98 -0.06 12.45 16 15 O -0.54 -13.38 16.64 5.56 0.09 -13.28 16 16 C -0.10 -2.27 5.82 36.00 0.21 -2.06 16 17 S -0.14 -3.88 18.45 -107.50 -1.98 -5.87 16 18 C -0.51 -15.33 10.04 30.94 0.31 -15.02 16 19 H 0.08 2.66 8.03 -52.49 -0.42 2.24 16 20 C 0.10 2.88 5.50 -17.43 -0.10 2.79 16 21 N -0.88 -27.31 13.97 55.49 0.78 -26.53 16 22 Si 0.85 22.53 27.74 -169.99 -4.72 17.81 16 23 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 25 H -0.24 -6.25 6.74 56.52 0.38 -5.87 16 26 C 0.10 1.12 7.36 -8.38 -0.06 1.05 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.08 0.42 6.03 -51.93 -0.31 0.11 16 31 H 0.08 0.31 8.07 -51.93 -0.42 -0.11 16 32 H 0.12 0.94 6.17 -52.49 -0.32 0.61 16 33 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.13 2.35 5.65 -51.93 -0.29 2.06 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 37 H 0.12 2.55 8.05 -51.93 -0.42 2.13 16 38 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 39 H 0.11 0.56 8.10 -51.93 -0.42 0.14 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.08 1.74 8.14 -51.91 -0.42 1.32 16 43 H 0.10 2.20 6.59 -51.92 -0.34 1.85 16 44 H 0.27 7.74 8.31 -40.82 -0.34 7.40 16 45 H 0.09 0.76 8.14 -51.92 -0.42 0.34 16 46 H 0.08 1.02 7.36 -51.93 -0.38 0.64 16 LS Contribution 384.90 15.07 5.80 5.80 Total: -1.00 -37.17 384.90 -9.47 -46.64 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -7.14 Total: 3.85 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -1.48 Total: -4.29 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: -0.07 Total: -42.64 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: 0.12 Total: -21.31 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.72 Total: 17.81 kcal Atomic # 16 Polarization: -3.88 SS G_CDS: -1.98 Total: -5.87 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.17 -9.47 -46.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079552785.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.222 kcal (2) G-P(sol) polarization free energy of solvation -37.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds