Wall clock time and date at job start Tue Mar 31 2020 21:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47574 * 2 1 4 4 C 1.34768 * 120.00206 * 270.00057 * 3 2 1 5 5 O 1.21614 * 119.99724 * 179.97438 * 4 3 2 6 6 C 1.47103 * 120.00235 * 0.02562 * 4 3 2 7 7 C 1.32988 * 120.00204 * 173.84852 * 6 4 3 8 8 C 1.50701 * 120.00124 * 353.07785 * 7 6 4 9 9 C 1.53001 * 117.50132 * 182.12674 * 8 7 6 10 10 C 1.52995 * 117.50141 * 113.50060 * 8 7 6 11 11 C 1.46507 * 119.99508 * 89.99943 * 3 2 1 12 12 C 1.53497 * 114.20329 * 120.00149 * 11 3 2 13 13 N 1.47067 * 87.98351 * 87.51983 * 12 11 3 14 14 C 1.34782 * 136.05431 * 207.08632 * 13 12 11 15 15 O 1.21272 * 120.00242 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99736 * 179.97438 * 14 13 12 17 17 S 1.80999 * 109.47204 * 179.97438 * 16 14 13 18 18 C 1.76205 * 100.00038 * 179.97438 * 17 16 14 19 19 H 1.07993 * 119.99873 * 0.02562 * 18 17 16 20 20 C 1.38799 * 119.99839 * 179.72208 * 18 17 16 21 21 N 1.31628 * 119.99948 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00023 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47222 * 89.99856 * 22 20 18 24 24 H 1.48497 * 109.47084 * 209.99857 * 22 20 18 25 25 H 1.48498 * 109.47198 * 330.00021 * 22 20 18 26 26 C 1.47059 * 87.88742 * 27.33913 * 13 12 11 27 27 H 1.09004 * 109.46702 * 299.99714 * 1 2 3 28 28 H 1.08994 * 109.46895 * 59.99648 * 1 2 3 29 29 H 1.08994 * 109.47074 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47051 * 239.99871 * 2 1 3 31 31 H 1.09004 * 109.47088 * 120.00479 * 2 1 3 32 32 H 1.07995 * 119.99495 * 353.84484 * 6 4 3 33 33 H 1.07998 * 120.00305 * 173.07641 * 7 6 4 34 34 H 1.08999 * 115.54871 * 327.83207 * 8 7 6 35 35 H 1.08998 * 117.49533 * 359.97438 * 9 8 7 36 36 H 1.08995 * 117.49765 * 145.01783 * 9 8 7 37 37 H 1.09000 * 117.50577 * 214.97975 * 10 8 7 38 38 H 1.09000 * 117.49807 * 359.97438 * 10 8 7 39 39 H 1.08995 * 113.28459 * 346.93868 * 11 3 2 40 40 H 1.08995 * 113.47173 * 332.73715 * 12 11 3 41 41 H 1.09000 * 113.46885 * 202.29358 * 12 11 3 42 42 H 1.09004 * 109.47343 * 59.99650 * 16 14 13 43 43 H 1.09002 * 109.47298 * 300.00258 * 16 14 13 44 44 H 0.97006 * 120.00019 * 180.02562 * 21 20 18 45 45 H 1.09009 * 113.46944 * 87.43720 * 26 13 12 46 46 H 1.08994 * 113.47247 * 217.87672 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2431 2.0165 -1.1671 5 8 2.6481 3.1632 -1.1670 6 6 1.9974 1.3233 -2.4411 7 6 2.1008 1.9861 -3.5894 8 6 2.3153 3.4777 -3.5819 9 6 2.3763 4.1895 -4.9349 10 6 3.6517 4.0020 -4.1108 11 6 2.2626 2.0717 1.2688 12 6 3.7127 2.5356 1.4639 13 7 3.3542 3.7789 0.7648 14 6 4.0047 4.6977 0.0238 15 8 5.1923 4.5749 -0.1890 16 6 3.2563 5.8778 -0.5404 17 16 4.3970 6.9225 -1.4803 18 6 3.2889 8.1858 -2.0103 19 1 2.2472 8.1432 -1.7288 20 6 3.7562 9.2390 -2.7842 21 7 2.9286 10.1830 -3.1797 22 14 5.5598 9.3167 -3.2645 23 1 5.7598 8.6069 -4.5534 24 1 5.9721 10.7356 -3.4117 25 1 6.3811 8.6692 -2.2103 26 6 1.9750 3.5817 1.2356 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.7330 0.2763 -2.4438 33 1 2.0312 1.4553 -4.5274 34 1 1.8576 4.0143 -2.7509 35 1 2.2619 3.5788 -5.8304 36 1 1.9586 5.1945 -4.9941 37 1 4.0732 4.8837 -3.6280 38 1 4.3761 3.2680 -4.4638 39 1 1.8395 1.5539 2.1296 40 1 4.4392 1.9282 0.9242 41 1 3.9830 2.6878 2.5089 42 1 2.8222 6.4564 0.2750 43 1 2.4619 5.5238 -1.1976 44 1 3.2551 10.9188 -3.7209 45 1 1.7871 4.0095 2.2204 46 1 1.2210 3.8654 0.5014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079552785.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:38 Heat of formation + Delta-G solvation = 31.546273 kcal Electronic energy + Delta-G solvation = -28734.745579 eV Core-core repulsion = 24947.382525 eV Total energy + Delta-G solvation = -3787.363055 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.17923 -39.99869 -38.83895 -37.71710 -36.51714 -34.70001 -33.20739 -32.09178 -30.81919 -28.97672 -27.86737 -26.87019 -25.74161 -23.91989 -23.24771 -23.10430 -21.59552 -20.36709 -19.55018 -19.06720 -18.27640 -17.81132 -17.29276 -17.17627 -16.68423 -16.58105 -16.29998 -15.84923 -15.61275 -15.33381 -14.94507 -14.80605 -14.55559 -14.27815 -14.19901 -13.84562 -13.51636 -13.41498 -13.40302 -13.29987 -13.05620 -12.96163 -12.61772 -12.58891 -12.42411 -12.40713 -12.06133 -11.93766 -11.89410 -11.79791 -11.20207 -11.16720 -10.75575 -10.53900 -10.35421 -10.04599 -9.55904 -9.17872 -8.96390 -8.54228 -6.23031 0.46374 0.96991 1.26398 1.43003 1.52293 1.83461 2.05314 2.17335 2.22750 2.37970 2.70506 2.83772 3.11260 3.38239 3.54543 3.71513 3.85641 4.07061 4.12201 4.15740 4.18556 4.22886 4.30767 4.36833 4.50027 4.51453 4.52197 4.55199 4.63781 4.65466 4.71819 4.77450 4.82389 5.05471 5.08219 5.10190 5.11028 5.27780 5.33293 5.39307 5.49951 5.59021 5.68110 5.81606 6.06817 6.54389 6.85846 6.91116 7.34665 7.46909 8.58925 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014606 B = 0.004210 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.545762 B = 6649.537584 C = 7702.091010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.105 3.895 3 N -0.596 5.596 4 C 0.520 3.480 5 O -0.537 6.537 6 C -0.219 4.219 7 C -0.032 4.032 8 C -0.121 4.121 9 C -0.174 4.174 10 C -0.172 4.172 11 C 0.133 3.867 12 C 0.085 3.915 13 N -0.621 5.621 14 C 0.596 3.404 15 O -0.590 6.590 16 C -0.082 4.082 17 S -0.166 6.166 18 C -0.525 4.525 19 H 0.052 0.948 20 C 0.051 3.949 21 N -0.917 5.917 22 Si 0.912 3.088 23 H -0.262 1.262 24 H -0.254 1.254 25 H -0.241 1.241 26 C 0.092 3.908 27 H 0.059 0.941 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.165 0.835 33 H 0.156 0.844 34 H 0.096 0.904 35 H 0.122 0.878 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.097 0.903 39 H 0.173 0.827 40 H 0.052 0.948 41 H 0.117 0.883 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.277 0.723 45 H 0.119 0.881 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.993 -28.730 8.307 30.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.016 4.016 3 N -0.329 5.329 4 C 0.311 3.689 5 O -0.416 6.416 6 C -0.240 4.240 7 C -0.051 4.051 8 C -0.139 4.139 9 C -0.211 4.211 10 C -0.210 4.210 11 C 0.028 3.972 12 C -0.038 4.038 13 N -0.354 5.354 14 C 0.386 3.614 15 O -0.472 6.472 16 C -0.233 4.233 17 S 0.061 5.939 18 C -0.673 4.673 19 H 0.070 0.930 20 C -0.155 4.155 21 N -0.555 5.555 22 Si 0.734 3.266 23 H -0.187 1.187 24 H -0.178 1.178 25 H -0.165 1.165 26 C -0.032 4.032 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.124 0.876 32 H 0.182 0.818 33 H 0.173 0.827 34 H 0.114 0.886 35 H 0.140 0.860 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.116 0.884 39 H 0.190 0.810 40 H 0.071 0.929 41 H 0.135 0.865 42 H 0.102 0.898 43 H 0.110 0.890 44 H 0.087 0.913 45 H 0.137 0.863 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.990 -27.995 7.791 29.669 hybrid contribution -0.869 1.267 -0.353 1.576 sum -6.859 -26.728 7.437 28.579 Atomic orbital electron populations 1.22187 0.95177 1.03125 1.02027 1.21869 0.94747 0.79927 1.05072 1.47746 1.65907 1.15290 1.03918 1.19236 0.77594 0.86435 0.85613 1.90908 1.44588 1.18878 1.87194 1.22906 1.07806 1.01976 0.91281 1.23301 0.90418 0.92240 0.99143 1.21363 1.01411 0.94218 0.96894 1.23053 1.01299 1.01537 0.95226 1.22764 0.91268 1.02776 1.04170 1.22500 0.94128 0.92259 0.88299 1.23709 0.98599 0.83478 0.98037 1.49100 1.12803 1.24335 1.49206 1.18712 0.85058 0.81171 0.76442 1.90604 1.17290 1.77547 1.61745 1.22962 1.01692 0.96782 1.01824 1.84525 1.16809 1.25433 1.67134 1.22399 0.96540 1.10005 1.38312 0.92989 1.25488 1.02191 0.93709 0.94068 1.70017 1.37056 1.12230 1.36195 0.85909 0.80537 0.79324 0.80858 1.18651 1.17805 1.16469 1.23568 0.84048 0.95316 1.00241 0.92150 0.93929 0.89741 0.89316 0.87622 0.81787 0.82664 0.88573 0.85995 0.90893 0.91326 0.88435 0.80997 0.92907 0.86508 0.89768 0.89027 0.91341 0.86312 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 10.24 71.98 0.74 -0.19 16 2 C 0.10 0.66 5.90 86.38 0.51 1.16 16 3 N -0.60 -8.97 2.74 -800.89 -2.20 -11.16 16 4 C 0.52 12.51 7.09 86.57 0.61 13.13 16 5 O -0.54 -18.13 5.74 -4.07 -0.02 -18.15 16 6 C -0.22 -4.19 9.24 23.43 0.22 -3.97 16 7 C -0.03 -0.71 9.74 24.52 0.24 -0.47 16 8 C -0.12 -3.94 4.37 -11.54 -0.05 -3.99 16 9 C -0.17 -5.60 10.23 30.60 0.31 -5.29 16 10 C -0.17 -6.49 10.23 30.59 0.31 -6.17 16 11 C 0.13 1.76 4.88 45.55 0.22 1.98 16 12 C 0.09 1.77 8.18 83.18 0.68 2.45 16 13 N -0.62 -19.32 2.09 -857.87 -1.79 -21.11 16 14 C 0.60 26.14 5.91 87.66 0.52 26.66 16 15 O -0.59 -30.85 16.64 -3.01 -0.05 -30.90 16 16 C -0.08 -3.89 5.82 71.24 0.41 -3.48 16 17 S -0.17 -9.44 18.45 -56.49 -1.04 -10.48 16 18 C -0.52 -33.17 10.04 67.95 0.68 -32.49 16 19 H 0.05 3.51 8.03 -2.91 -0.02 3.49 16 20 C 0.05 3.16 5.50 84.86 0.47 3.62 16 21 N -0.92 -58.44 13.97 21.65 0.30 -58.14 16 22 Si 0.91 47.94 27.74 68.60 1.90 49.84 16 23 H -0.26 -13.43 7.11 99.48 0.71 -12.72 16 24 H -0.25 -12.33 7.11 99.48 0.71 -11.62 16 25 H -0.24 -12.80 6.74 99.48 0.67 -12.13 16 26 C 0.09 1.88 7.36 83.27 0.61 2.49 16 27 H 0.06 0.35 8.14 -2.38 -0.02 0.33 16 28 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.09 0.46 6.03 -2.38 -0.01 0.44 16 31 H 0.11 0.16 8.07 -2.39 -0.02 0.14 16 32 H 0.16 1.73 6.17 -2.91 -0.02 1.71 16 33 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 34 H 0.10 3.80 5.65 -2.39 -0.01 3.79 16 35 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 36 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.07 3.27 8.05 -2.39 -0.02 3.25 16 38 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 39 H 0.17 0.47 8.10 -2.39 -0.02 0.45 16 40 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.08 3.85 8.14 -2.39 -0.02 3.83 16 43 H 0.09 4.46 6.59 -2.39 -0.02 4.45 16 44 H 0.28 16.26 8.31 -92.70 -0.77 15.49 16 45 H 0.12 1.70 8.14 -2.38 -0.02 1.68 16 46 H 0.06 1.52 7.36 -2.39 -0.02 1.50 16 Total: -1.00 -90.27 384.90 4.52 -85.75 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.94 Total: 18.90 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: 6.49 Total: -4.55 kcal Atomic # 7 Polarization: -86.72 SS G_CDS: -3.69 Total: -90.41 kcal Atomic # 8 Polarization: -48.98 SS G_CDS: -0.07 Total: -49.05 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 1.90 Total: 49.84 kcal Atomic # 16 Polarization: -9.44 SS G_CDS: -1.04 Total: -10.48 kcal Total: -90.27 4.52 -85.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079552785.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.294 kcal (2) G-P(sol) polarization free energy of solvation -90.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds