Wall clock time and date at job start Tue Mar 31 2020 21:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 109.46774 * 2 1 4 4 C 1.34774 * 120.00251 * 276.02644 * 3 2 1 5 5 O 1.21619 * 120.00230 * 183.65143 * 4 3 2 6 6 C 1.47098 * 119.99934 * 3.65245 * 4 3 2 7 7 C 1.32619 * 124.62263 * 153.41685 * 6 4 3 8 8 C 1.51116 * 110.75750 * 179.84401 * 7 6 4 9 9 C 1.54570 * 104.90273 * 343.80674 * 8 7 6 10 10 C 1.51122 * 124.62104 * 333.72027 * 6 4 3 11 11 C 1.46504 * 120.00188 * 96.02721 * 3 2 1 12 12 C 1.53492 * 114.21015 * 232.78196 * 11 3 2 13 13 N 1.47067 * 87.98650 * 220.14886 * 12 11 3 14 14 C 1.34772 * 136.05471 * 207.08633 * 13 12 11 15 15 O 1.21280 * 120.00189 * 359.97438 * 14 13 12 16 16 C 1.50706 * 120.00032 * 179.97438 * 14 13 12 17 17 S 1.81001 * 109.47387 * 180.02562 * 16 14 13 18 18 C 1.76194 * 99.99927 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00070 * 359.97438 * 18 17 16 20 20 C 1.38798 * 119.99998 * 179.72593 * 18 17 16 21 21 N 1.31630 * 119.99799 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00164 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47189 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47359 * 119.99799 * 22 20 18 25 25 H 1.48503 * 109.47146 * 239.99750 * 22 20 18 26 26 C 1.47063 * 87.88708 * 27.33694 * 13 12 11 27 27 H 1.09000 * 109.47312 * 60.00280 * 1 2 3 28 28 H 1.09003 * 109.47172 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47529 * 300.00036 * 1 2 3 30 30 H 1.09001 * 109.47529 * 239.99964 * 2 1 3 31 31 H 1.09000 * 109.47312 * 119.99719 * 2 1 3 32 32 H 1.07990 * 124.61848 * 0.02562 * 7 6 4 33 33 H 1.08998 * 110.51638 * 224.84692 * 8 7 6 34 34 H 1.09003 * 110.24250 * 102.62078 * 8 7 6 35 35 H 1.08999 * 110.98541 * 266.71113 * 9 8 7 36 36 H 1.09002 * 110.98744 * 142.90762 * 9 8 7 37 37 H 1.09000 * 110.36295 * 315.43837 * 10 6 4 38 38 H 1.08996 * 110.35952 * 77.75494 * 10 6 4 39 39 H 1.09004 * 113.28023 * 5.84873 * 11 3 2 40 40 H 1.09000 * 113.47010 * 105.36312 * 12 11 3 41 41 H 1.09005 * 113.51451 * 334.93490 * 12 11 3 42 42 H 1.08994 * 109.46977 * 59.99796 * 16 14 13 43 43 H 1.09004 * 109.46890 * 300.00366 * 16 14 13 44 44 H 0.97002 * 119.99947 * 179.97438 * 21 20 18 45 45 H 1.09005 * 113.46315 * 87.43661 * 26 13 12 46 46 H 1.08993 * 113.47265 * 217.87901 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1273 2.0575 -1.1607 5 8 2.5948 3.1802 -1.1688 6 6 1.6808 1.4376 -2.4178 7 6 1.2679 2.1094 -3.4841 8 6 0.8874 1.1630 -4.5991 9 6 1.5189 -0.1913 -4.2038 10 6 1.6240 -0.0517 -2.6679 11 6 2.3879 2.0275 1.2617 12 6 1.7040 3.3809 1.4998 13 7 2.9809 3.8727 2.0388 14 6 3.3619 4.8147 2.9242 15 8 2.5275 5.4944 3.4833 16 6 4.8250 5.0236 3.2194 17 16 5.0114 6.3474 4.4396 18 6 6.7664 6.3779 4.5921 19 1 7.3708 5.6953 4.0132 20 6 7.3726 7.2829 5.4524 21 7 6.6363 8.1186 6.1539 22 14 9.2332 7.3148 5.6147 23 1 9.8254 6.2827 4.7264 24 1 9.7413 8.6547 5.2248 25 1 9.6123 7.0322 7.0225 26 6 3.6592 2.8887 1.1819 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.2140 3.1860 -3.5479 33 1 1.2947 1.5086 -5.5492 34 1 -0.1969 1.0718 -4.6627 35 1 2.5048 -0.3084 -4.6534 36 1 0.8662 -1.0208 -4.4763 37 1 2.5324 -0.5322 -2.3046 38 1 0.7468 -0.4838 -2.1867 39 1 2.3542 1.3530 2.1174 40 1 0.9066 3.3397 2.2418 41 1 1.3991 3.8817 0.5809 42 1 5.3450 5.2987 2.3019 43 1 5.2508 4.1018 3.6159 44 1 7.0599 8.7508 6.7555 45 1 3.8701 3.2591 0.1787 46 1 4.5275 2.4282 1.6530 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079601505.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:30 Heat of formation + Delta-G solvation = 12.680854 kcal Electronic energy + Delta-G solvation = -26816.775089 eV Core-core repulsion = 23028.593969 eV Total energy + Delta-G solvation = -3788.181121 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.41113 -39.62437 -38.18103 -37.05869 -36.05461 -32.38768 -31.33809 -30.26619 -29.65603 -28.95734 -27.42798 -25.92023 -25.39639 -24.33805 -22.97638 -21.78718 -20.65063 -19.01971 -18.57106 -17.64772 -17.15970 -16.67570 -16.30253 -16.25814 -15.75002 -15.61152 -14.77535 -14.72769 -14.58734 -14.40026 -13.90936 -13.69121 -13.29197 -13.25217 -13.09939 -12.87351 -12.68400 -12.51773 -12.45469 -12.35239 -12.14735 -12.10566 -12.00048 -11.74023 -11.63540 -11.09085 -11.03646 -10.95801 -10.91386 -10.71900 -10.00671 -9.76617 -9.40900 -9.31016 -9.03315 -8.93572 -8.37361 -8.17827 -6.45174 -6.17482 -3.87572 1.04575 2.39206 2.76461 2.97386 3.20142 3.24657 3.30908 3.35585 3.68167 3.91336 4.06323 4.19947 4.24436 4.32885 4.43614 4.54572 4.69043 4.74972 4.80639 4.85567 4.95605 5.05080 5.09501 5.12735 5.17539 5.21421 5.27389 5.31440 5.38457 5.44994 5.48249 5.54416 5.63400 5.64840 5.67182 5.75182 5.77954 5.88885 5.98193 6.08134 6.10613 6.23069 6.41053 7.01627 7.64332 7.84534 7.99007 8.40053 8.64323 9.27729 10.90082 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022413 B = 0.002141 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.995873 B =13074.852409 C =13499.237461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.077 3.923 3 N -0.595 5.595 4 C 0.567 3.433 5 O -0.524 6.524 6 C -0.192 4.192 7 C -0.075 4.075 8 C -0.107 4.107 9 C -0.127 4.127 10 C -0.095 4.095 11 C 0.106 3.894 12 C 0.098 3.902 13 N -0.644 5.644 14 C 0.565 3.435 15 O -0.517 6.517 16 C -0.142 4.142 17 S -0.061 6.061 18 C -0.533 4.533 19 H 0.073 0.927 20 C 0.072 3.928 21 N -0.868 5.868 22 Si 0.920 3.080 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.080 3.920 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.137 0.863 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.127 0.873 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.267 0.733 45 H 0.119 0.881 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.322 -24.350 -21.725 35.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.045 4.045 3 N -0.327 5.327 4 C 0.358 3.642 5 O -0.402 6.402 6 C -0.195 4.195 7 C -0.095 4.095 8 C -0.144 4.144 9 C -0.164 4.164 10 C -0.131 4.131 11 C 0.002 3.998 12 C -0.026 4.026 13 N -0.383 5.383 14 C 0.355 3.645 15 O -0.391 6.391 16 C -0.293 4.293 17 S 0.166 5.834 18 C -0.681 4.681 19 H 0.091 0.909 20 C -0.137 4.137 21 N -0.503 5.503 22 Si 0.746 3.254 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.044 4.044 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.122 0.878 31 H 0.100 0.900 32 H 0.155 0.845 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.145 0.855 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.077 0.923 45 H 0.137 0.863 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.235 -22.429 -20.564 33.595 hybrid contribution 2.096 -0.722 -0.446 2.261 sum -12.140 -23.151 -21.010 33.537 Atomic orbital electron populations 1.22282 0.95683 1.02417 1.02948 1.22357 0.94930 0.82140 1.05046 1.47688 1.64891 1.14311 1.05766 1.18082 0.77986 0.84993 0.83186 1.90770 1.44011 1.18962 1.86449 1.21736 1.06419 0.96652 0.94672 1.24032 0.92269 1.00027 0.93145 1.21473 1.01389 0.93846 0.97701 1.22491 1.01564 0.97191 0.95168 1.21656 1.02597 0.92375 0.96513 1.23101 0.96987 0.93433 0.86318 1.23226 0.89210 0.91174 0.99005 1.49271 1.09854 1.37653 1.41510 1.19863 0.90824 0.76754 0.77059 1.90705 1.53861 1.44415 1.50082 1.23457 0.93724 1.06299 1.05812 1.85381 1.08707 1.40485 1.48863 1.22903 0.91418 1.23866 1.29915 0.90885 1.25001 0.99324 0.94578 0.94780 1.70036 1.35506 1.19661 1.25119 0.86102 0.83147 0.78109 0.78047 1.19624 1.20566 1.20578 1.23775 0.95715 0.87268 0.97605 0.92040 0.91327 0.91965 0.87845 0.89966 0.84523 0.90102 0.89680 0.90756 0.90440 0.90269 0.89269 0.85538 0.90674 0.89230 0.89276 0.89358 0.92271 0.86323 0.90772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.76 9.04 37.15 0.34 -0.43 16 2 C 0.08 0.37 5.71 -4.04 -0.02 0.35 16 3 N -0.59 -4.97 2.77 -167.12 -0.46 -5.43 16 4 C 0.57 5.84 7.01 -12.67 -0.09 5.75 16 5 O -0.52 -7.44 12.46 5.26 0.07 -7.38 16 6 C -0.19 -1.44 5.13 -102.72 -0.53 -1.96 16 7 C -0.08 -0.53 10.53 -36.00 -0.38 -0.90 16 8 C -0.11 -0.46 6.80 -26.85 -0.18 -0.64 16 9 C -0.13 -0.45 7.16 -25.08 -0.18 -0.63 16 10 C -0.09 -0.41 4.34 -26.85 -0.12 -0.53 16 11 C 0.11 1.09 4.80 -67.68 -0.32 0.76 16 12 C 0.10 1.35 8.03 -8.51 -0.07 1.29 16 13 N -0.64 -10.92 3.69 -185.07 -0.68 -11.60 16 14 C 0.57 12.24 8.10 -10.98 -0.09 12.15 16 15 O -0.52 -13.14 16.64 5.56 0.09 -13.04 16 16 C -0.14 -3.20 5.98 36.01 0.22 -2.99 16 17 S -0.06 -1.75 20.57 -107.50 -2.21 -3.96 16 18 C -0.53 -15.75 9.50 30.94 0.29 -15.46 16 19 H 0.07 2.06 7.80 -52.49 -0.41 1.65 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 21 N -0.87 -26.85 13.22 55.49 0.73 -26.12 16 22 Si 0.92 22.01 29.55 -169.99 -5.02 16.98 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 26 C 0.08 1.06 7.78 -8.37 -0.07 1.00 16 27 H 0.06 0.31 6.67 -51.93 -0.35 -0.04 16 28 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.10 0.36 3.41 -51.93 -0.18 0.19 16 31 H 0.08 0.31 7.88 -51.93 -0.41 -0.10 16 32 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.08 0.31 6.89 -51.93 -0.36 -0.05 16 38 H 0.09 0.28 5.25 -51.93 -0.27 0.00 16 39 H 0.13 1.04 7.92 -51.93 -0.41 0.63 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.09 1.33 6.47 -51.93 -0.34 1.00 16 42 H 0.09 1.92 8.14 -51.92 -0.42 1.50 16 43 H 0.09 1.83 8.14 -51.91 -0.42 1.40 16 44 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 45 H 0.12 1.75 5.22 -51.93 -0.27 1.47 16 46 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 380.93 15.07 5.74 5.74 Total: -1.00 -37.79 380.93 -9.82 -47.61 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -6.78 Total: -2.58 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -1.29 Total: -0.22 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: -0.41 Total: -43.15 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: 0.16 Total: -20.42 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: -1.75 SS G_CDS: -2.21 Total: -3.96 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.79 -9.82 -47.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079601505.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.293 kcal (2) G-P(sol) polarization free energy of solvation -37.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds