Wall clock time and date at job start Tue Mar 31 2020 21:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 109.46774 * 2 1 4 4 C 1.34774 * 120.00251 * 276.02644 * 3 2 1 5 5 O 1.21619 * 120.00230 * 183.65143 * 4 3 2 6 6 C 1.47098 * 119.99934 * 3.65245 * 4 3 2 7 7 C 1.32619 * 124.62263 * 153.41685 * 6 4 3 8 8 C 1.51116 * 110.75750 * 179.84401 * 7 6 4 9 9 C 1.54570 * 104.90273 * 343.80674 * 8 7 6 10 10 C 1.51122 * 124.62104 * 333.72027 * 6 4 3 11 11 C 1.46504 * 120.00188 * 96.02721 * 3 2 1 12 12 C 1.53492 * 114.21015 * 232.78196 * 11 3 2 13 13 N 1.47067 * 87.98650 * 220.14886 * 12 11 3 14 14 C 1.34772 * 136.05471 * 207.08633 * 13 12 11 15 15 O 1.21280 * 120.00189 * 359.97438 * 14 13 12 16 16 C 1.50706 * 120.00032 * 179.97438 * 14 13 12 17 17 S 1.81001 * 109.47387 * 180.02562 * 16 14 13 18 18 C 1.76194 * 99.99927 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00070 * 359.97438 * 18 17 16 20 20 C 1.38798 * 119.99998 * 179.72593 * 18 17 16 21 21 N 1.31630 * 119.99799 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00164 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47189 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47359 * 119.99799 * 22 20 18 25 25 H 1.48503 * 109.47146 * 239.99750 * 22 20 18 26 26 C 1.47063 * 87.88708 * 27.33694 * 13 12 11 27 27 H 1.09000 * 109.47312 * 60.00280 * 1 2 3 28 28 H 1.09003 * 109.47172 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47529 * 300.00036 * 1 2 3 30 30 H 1.09001 * 109.47529 * 239.99964 * 2 1 3 31 31 H 1.09000 * 109.47312 * 119.99719 * 2 1 3 32 32 H 1.07990 * 124.61848 * 0.02562 * 7 6 4 33 33 H 1.08998 * 110.51638 * 224.84692 * 8 7 6 34 34 H 1.09003 * 110.24250 * 102.62078 * 8 7 6 35 35 H 1.08999 * 110.98541 * 266.71113 * 9 8 7 36 36 H 1.09002 * 110.98744 * 142.90762 * 9 8 7 37 37 H 1.09000 * 110.36295 * 315.43837 * 10 6 4 38 38 H 1.08996 * 110.35952 * 77.75494 * 10 6 4 39 39 H 1.09004 * 113.28023 * 5.84873 * 11 3 2 40 40 H 1.09000 * 113.47010 * 105.36312 * 12 11 3 41 41 H 1.09005 * 113.51451 * 334.93490 * 12 11 3 42 42 H 1.08994 * 109.46977 * 59.99796 * 16 14 13 43 43 H 1.09004 * 109.46890 * 300.00366 * 16 14 13 44 44 H 0.97002 * 119.99947 * 179.97438 * 21 20 18 45 45 H 1.09005 * 113.46315 * 87.43661 * 26 13 12 46 46 H 1.08993 * 113.47265 * 217.87901 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1273 2.0575 -1.1607 5 8 2.5948 3.1802 -1.1688 6 6 1.6808 1.4376 -2.4178 7 6 1.2679 2.1094 -3.4841 8 6 0.8874 1.1630 -4.5991 9 6 1.5189 -0.1913 -4.2038 10 6 1.6240 -0.0517 -2.6679 11 6 2.3879 2.0275 1.2617 12 6 1.7040 3.3809 1.4998 13 7 2.9809 3.8727 2.0388 14 6 3.3619 4.8147 2.9242 15 8 2.5275 5.4944 3.4833 16 6 4.8250 5.0236 3.2194 17 16 5.0114 6.3474 4.4396 18 6 6.7664 6.3779 4.5921 19 1 7.3708 5.6953 4.0132 20 6 7.3726 7.2829 5.4524 21 7 6.6363 8.1186 6.1539 22 14 9.2332 7.3148 5.6147 23 1 9.8254 6.2827 4.7264 24 1 9.7413 8.6547 5.2248 25 1 9.6123 7.0322 7.0225 26 6 3.6592 2.8887 1.1819 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.2140 3.1860 -3.5479 33 1 1.2947 1.5086 -5.5492 34 1 -0.1969 1.0718 -4.6627 35 1 2.5048 -0.3084 -4.6534 36 1 0.8662 -1.0208 -4.4763 37 1 2.5324 -0.5322 -2.3046 38 1 0.7468 -0.4838 -2.1867 39 1 2.3542 1.3530 2.1174 40 1 0.9066 3.3397 2.2418 41 1 1.3991 3.8817 0.5809 42 1 5.3450 5.2987 2.3019 43 1 5.2508 4.1018 3.6159 44 1 7.0599 8.7508 6.7555 45 1 3.8701 3.2591 0.1787 46 1 4.5275 2.4282 1.6530 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079601505.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:30 Heat of formation + Delta-G solvation = -12.408939 kcal Electronic energy + Delta-G solvation = -26817.863065 eV Core-core repulsion = 23028.593969 eV Total energy + Delta-G solvation = -3789.269096 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.32581 -40.68948 -39.20097 -38.15054 -36.79161 -34.62485 -32.41757 -31.22168 -30.47713 -29.37105 -28.64209 -27.69073 -27.03151 -24.96400 -23.78926 -22.18993 -21.38141 -20.53251 -19.58344 -19.20341 -18.14270 -17.87560 -17.29858 -17.10882 -16.91473 -16.57921 -16.55737 -16.02224 -15.91385 -15.60701 -14.83160 -14.75474 -14.48638 -14.20449 -14.05997 -13.88549 -13.71786 -13.50278 -13.34156 -13.23083 -13.17780 -12.93563 -12.90591 -12.64846 -12.59903 -12.52696 -12.35167 -12.06756 -11.93964 -11.75869 -11.33598 -11.18987 -11.15154 -10.74633 -10.35245 -9.96407 -9.74450 -9.62717 -8.73402 -8.38073 -6.17875 0.43120 1.11301 1.37672 1.39803 1.43594 1.53204 1.70229 2.02805 2.21850 2.23936 2.95816 3.13118 3.22396 3.39367 3.57925 3.67588 3.84007 3.88872 4.09901 4.12139 4.17845 4.26038 4.32598 4.35369 4.41531 4.41639 4.47564 4.54851 4.61868 4.70003 4.73335 4.81162 4.85122 4.92369 4.98536 5.01978 5.09870 5.23528 5.35226 5.38195 5.41531 5.46359 5.57076 5.60693 6.16678 6.31954 6.52798 6.99027 7.02497 7.08830 8.71772 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022413 B = 0.002141 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.995873 B =13074.852409 C =13499.237461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.071 3.929 3 N -0.588 5.588 4 C 0.559 3.441 5 O -0.574 6.574 6 C -0.203 4.203 7 C -0.084 4.084 8 C -0.104 4.104 9 C -0.123 4.123 10 C -0.090 4.090 11 C 0.135 3.865 12 C 0.091 3.909 13 N -0.643 5.643 14 C 0.562 3.438 15 O -0.567 6.567 16 C -0.116 4.116 17 S -0.147 6.147 18 C -0.546 4.546 19 H 0.082 0.918 20 C 0.012 3.988 21 N -0.911 5.911 22 Si 1.004 2.996 23 H -0.257 1.257 24 H -0.273 1.273 25 H -0.270 1.270 26 C 0.075 3.925 27 H 0.052 0.948 28 H 0.092 0.908 29 H 0.048 0.952 30 H 0.122 0.878 31 H 0.103 0.897 32 H 0.118 0.882 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.160 0.840 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.110 0.890 44 H 0.272 0.728 45 H 0.106 0.894 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.543 -28.293 -23.146 38.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.049 4.049 3 N -0.318 5.318 4 C 0.351 3.649 5 O -0.455 6.455 6 C -0.206 4.206 7 C -0.103 4.103 8 C -0.141 4.141 9 C -0.160 4.160 10 C -0.127 4.127 11 C 0.030 3.970 12 C -0.033 4.033 13 N -0.379 5.379 14 C 0.352 3.648 15 O -0.446 6.446 16 C -0.267 4.267 17 S 0.080 5.920 18 C -0.694 4.694 19 H 0.100 0.900 20 C -0.193 4.193 21 N -0.547 5.547 22 Si 0.825 3.175 23 H -0.181 1.181 24 H -0.198 1.198 25 H -0.195 1.195 26 C -0.048 4.048 27 H 0.071 0.929 28 H 0.111 0.889 29 H 0.067 0.933 30 H 0.140 0.860 31 H 0.121 0.879 32 H 0.136 0.864 33 H 0.104 0.896 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.117 0.883 37 H 0.107 0.893 38 H 0.125 0.875 39 H 0.177 0.823 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.116 0.884 43 H 0.128 0.872 44 H 0.081 0.919 45 H 0.124 0.876 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.483 -26.467 -22.035 36.984 hybrid contribution 1.732 0.456 -0.144 1.797 sum -11.751 -26.011 -22.179 36.147 Atomic orbital electron populations 1.22264 0.95206 1.03663 1.01923 1.22709 0.95262 0.79884 1.07044 1.47785 1.64092 1.15543 1.04379 1.18644 0.77206 0.84481 0.84542 1.90747 1.46331 1.21206 1.87252 1.21836 1.06742 0.98720 0.93330 1.24240 0.91985 0.99792 0.94313 1.21518 1.02266 0.93620 0.96675 1.22518 1.01928 0.97151 0.94394 1.21711 1.03779 0.89791 0.97386 1.22913 0.93504 0.92359 0.88249 1.23426 0.88425 0.93256 0.98152 1.49228 1.12377 1.36196 1.40084 1.19629 0.89958 0.77302 0.77956 1.90675 1.54679 1.46686 1.52557 1.23234 0.95089 1.04438 1.03925 1.85556 1.10074 1.44387 1.51955 1.23206 0.91148 1.24533 1.30525 0.90029 1.26190 1.05404 0.93719 0.93944 1.70194 1.38162 1.20492 1.25875 0.84843 0.75490 0.78618 0.78581 1.18105 1.19829 1.19532 1.23981 0.97833 0.86770 0.96244 0.92850 0.88899 0.93283 0.86023 0.87902 0.86449 0.89606 0.88373 0.90880 0.88341 0.89338 0.87524 0.82266 0.90313 0.90706 0.88416 0.87165 0.91861 0.87646 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 9.04 71.98 0.65 -0.32 16 2 C 0.07 0.43 5.71 86.38 0.49 0.92 16 3 N -0.59 -8.63 2.77 -800.89 -2.22 -10.85 16 4 C 0.56 11.22 7.01 86.57 0.61 11.83 16 5 O -0.57 -16.89 12.46 -4.09 -0.05 -16.94 16 6 C -0.20 -2.81 5.13 -18.56 -0.10 -2.90 16 7 C -0.08 -1.14 10.53 24.66 0.26 -0.88 16 8 C -0.10 -0.69 6.80 30.51 0.21 -0.48 16 9 C -0.12 -0.49 7.16 31.66 0.23 -0.27 16 10 C -0.09 -0.50 4.34 30.52 0.13 -0.37 16 11 C 0.14 2.50 4.80 45.55 0.22 2.72 16 12 C 0.09 2.51 8.03 83.18 0.67 3.18 16 13 N -0.64 -21.83 3.69 -857.83 -3.16 -25.00 16 14 C 0.56 24.94 8.10 87.66 0.71 25.65 16 15 O -0.57 -30.17 16.64 -3.03 -0.05 -30.22 16 16 C -0.12 -5.28 5.98 71.24 0.43 -4.85 16 17 S -0.15 -8.72 20.57 -56.49 -1.16 -9.89 16 18 C -0.55 -32.67 9.50 67.95 0.65 -32.03 16 19 H 0.08 4.57 7.80 -2.91 -0.02 4.54 16 20 C 0.01 0.71 5.49 84.86 0.47 1.18 16 21 N -0.91 -57.55 13.22 21.65 0.29 -57.27 16 22 Si 1.00 44.97 29.55 68.60 2.03 47.00 16 23 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 26 C 0.07 1.89 7.78 83.27 0.65 2.54 16 27 H 0.05 0.40 6.67 -2.39 -0.02 0.39 16 28 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.05 0.42 8.14 -2.39 -0.02 0.41 16 30 H 0.12 0.35 3.41 -2.39 -0.01 0.34 16 31 H 0.10 0.27 7.88 -2.39 -0.02 0.25 16 32 H 0.12 1.98 8.06 -2.92 -0.02 1.95 16 33 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.10 0.03 8.14 -2.39 -0.02 0.01 16 37 H 0.09 0.35 6.89 -2.39 -0.02 0.34 16 38 H 0.11 0.23 5.25 -2.39 -0.01 0.21 16 39 H 0.16 2.01 7.92 -2.39 -0.02 1.99 16 40 H 0.08 2.10 8.14 -2.39 -0.02 2.09 16 41 H 0.07 2.32 6.47 -2.38 -0.02 2.31 16 42 H 0.10 4.25 8.14 -2.40 -0.02 4.23 16 43 H 0.11 4.48 8.14 -2.39 -0.02 4.47 16 44 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 45 H 0.11 3.12 5.22 -2.38 -0.01 3.10 16 46 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -87.33 380.93 2.92 -84.40 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 0.99 Total: 12.84 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 6.26 Total: 5.92 kcal Atomic # 7 Polarization: -88.02 SS G_CDS: -5.09 Total: -93.11 kcal Atomic # 8 Polarization: -47.06 SS G_CDS: -0.10 Total: -47.16 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.89 kcal Total: -87.33 2.92 -84.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079601505.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.993 kcal (2) G-P(sol) polarization free energy of solvation -87.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds