Wall clock time and date at job start Tue Mar 31 2020 21:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47119 * 107.96751 * 3 2 1 5 5 C 1.52995 * 109.46970 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47125 * 179.97438 * 5 4 3 7 7 O 1.21287 * 120.00098 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00316 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99953 * 5.37571 * 8 6 5 10 10 C 1.53006 * 109.47101 * 269.99905 * 9 8 6 11 11 C 1.46508 * 120.00200 * 185.37491 * 8 6 5 12 12 C 1.53491 * 114.20556 * 245.64097 * 11 8 6 13 13 N 1.47069 * 87.98357 * 220.14953 * 12 11 8 14 14 C 1.34779 * 136.05315 * 207.08846 * 13 12 11 15 15 O 1.21281 * 120.00388 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99873 * 179.97438 * 14 13 12 17 17 S 1.81000 * 109.47434 * 179.97438 * 16 14 13 18 18 C 1.76200 * 100.00086 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00028 * 359.97438 * 18 17 16 20 20 C 1.38795 * 119.99719 * 179.72844 * 18 17 16 21 21 N 1.31636 * 119.99927 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00217 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.47185 * 90.00414 * 22 20 18 24 24 H 1.48498 * 109.47278 * 210.00190 * 22 20 18 25 25 H 1.48497 * 109.47487 * 330.00575 * 22 20 18 26 26 C 1.47057 * 87.88679 * 27.34429 * 13 12 11 27 27 H 4.44650 * 5.63276 * 180.02562 * 4 1 2 28 28 H 1.09001 * 109.47125 * 347.96592 * 3 2 1 29 29 H 1.09006 * 109.46991 * 227.96664 * 3 2 1 30 30 H 1.09001 * 109.47251 * 59.99919 * 4 3 2 31 31 H 1.09001 * 109.46694 * 300.00046 * 4 3 2 32 32 H 1.09002 * 109.47427 * 60.00389 * 5 4 3 33 33 H 1.09001 * 109.47509 * 299.99620 * 5 4 3 34 34 H 1.08996 * 109.47019 * 29.99733 * 9 8 6 35 35 H 1.09000 * 109.47218 * 150.00167 * 9 8 6 36 36 H 1.08998 * 109.46884 * 300.00327 * 10 9 8 37 37 H 1.09000 * 109.46871 * 60.00049 * 10 9 8 38 38 H 1.08998 * 109.47286 * 179.97438 * 10 9 8 39 39 H 1.09000 * 113.27891 * 18.70781 * 11 8 6 40 40 H 1.08999 * 113.47047 * 105.36827 * 12 11 8 41 41 H 1.09000 * 113.52064 * 334.93485 * 12 11 8 42 42 H 1.09008 * 109.46904 * 59.99839 * 16 14 13 43 43 H 1.08995 * 109.47375 * 300.00175 * 16 14 13 44 44 H 0.96994 * 119.99706 * 179.97438 * 21 20 18 45 45 H 1.09000 * 113.47010 * 87.43772 * 26 13 12 46 46 H 1.09000 * 113.46644 * 217.88393 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1558 0.4459 -1.3722 5 6 4.6858 0.4472 -1.3719 6 6 5.1879 0.8851 -2.7236 7 8 4.3997 1.1687 -3.6007 8 7 6.5129 0.9615 -2.9580 9 6 7.4641 0.5075 -1.9404 10 6 7.8194 1.6750 -1.0174 11 6 7.0021 1.4986 -4.2302 12 6 7.7351 0.4732 -5.1060 13 7 8.7006 1.5297 -5.4443 14 6 9.5147 1.8040 -6.4829 15 8 9.5459 1.0617 -7.4415 16 6 10.3862 3.0330 -6.4530 17 16 11.3561 3.1223 -7.9785 18 6 12.2562 4.6078 -7.6824 19 1 12.1071 5.1555 -6.7636 20 6 13.1607 5.0713 -8.6277 21 7 13.8328 6.1814 -8.4067 22 14 13.4242 4.1199 -10.2135 23 1 12.4749 4.6069 -11.2465 24 1 14.8172 4.3224 -10.6866 25 1 13.1899 2.6742 -9.9682 26 6 8.3917 2.1515 -4.1480 27 1 -1.0500 0.0001 0.0002 28 1 3.0098 -1.0043 0.2143 29 1 3.0090 0.6889 0.7633 30 1 2.7920 1.4508 -1.5864 31 1 2.7927 -0.2424 -2.1354 32 1 5.0500 -0.5576 -1.1576 33 1 5.0485 1.1357 -0.6087 34 1 7.0147 -0.2946 -1.3552 35 1 8.3682 0.1404 -2.4263 36 1 8.2687 2.4772 -1.6027 37 1 6.9154 2.0421 -0.5316 38 1 8.5268 1.3371 -0.2601 39 1 6.2575 2.0903 -4.7628 40 1 7.1482 0.1322 -5.9589 41 1 8.1722 -0.3492 -4.5397 42 1 11.0595 2.9803 -5.5973 43 1 9.7596 3.9208 -6.3679 44 1 14.4651 6.5051 -9.0671 45 1 9.0017 1.7721 -3.3282 46 1 8.3641 3.2406 -4.1846 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079679723.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:41 Heat of formation + Delta-G solvation = -7.553410 kcal Electronic energy + Delta-G solvation = -25876.904192 eV Core-core repulsion = 22087.845648 eV Total energy + Delta-G solvation = -3789.058544 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.04975 -40.57821 -39.04623 -36.47582 -36.46118 -34.69150 -33.22862 -32.21065 -31.22063 -29.65623 -28.35572 -27.85425 -26.99692 -24.43605 -24.18841 -22.25456 -20.55626 -19.94997 -19.65412 -19.02303 -18.36538 -18.12856 -17.51831 -17.20052 -16.98519 -16.75390 -16.39293 -15.78007 -15.66410 -15.38523 -14.93282 -14.85569 -14.65509 -14.44787 -14.29389 -13.93488 -13.70673 -13.62508 -13.48046 -13.36693 -13.30452 -13.21730 -13.03462 -12.69477 -12.62178 -12.32208 -12.13641 -12.01400 -11.88673 -11.67973 -11.19618 -11.18813 -11.14077 -10.94043 -10.78801 -10.57974 -9.93544 -9.71762 -9.03998 -8.53278 -6.25182 0.88218 1.30314 1.35233 1.40034 1.48601 1.59078 1.70777 1.89830 1.94826 2.17434 2.23618 2.63662 2.85057 3.17840 3.33646 3.51876 3.61707 3.77613 3.97081 4.08205 4.11272 4.16073 4.18653 4.29158 4.35306 4.42279 4.43869 4.50844 4.53817 4.62595 4.70293 4.72249 4.74977 4.83306 4.85848 5.05124 5.10667 5.23937 5.24197 5.36381 5.51511 5.55199 5.69077 6.09437 6.33827 6.48260 6.74562 6.91687 6.94183 7.16388 8.58993 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.029903 B = 0.001786 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.140797 B =15671.801801 C =15933.747604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.214 4.214 3 C -0.010 4.010 4 C -0.097 4.097 5 C -0.129 4.129 6 C 0.511 3.489 7 O -0.587 6.587 8 N -0.595 5.595 9 C 0.090 3.910 10 C -0.178 4.178 11 C 0.123 3.877 12 C 0.091 3.909 13 N -0.648 5.648 14 C 0.566 3.434 15 O -0.563 6.563 16 C -0.100 4.100 17 S -0.175 6.175 18 C -0.529 4.529 19 H 0.064 0.936 20 C 0.049 3.951 21 N -0.914 5.914 22 Si 0.912 3.088 23 H -0.264 1.264 24 H -0.257 1.257 25 H -0.238 1.238 26 C 0.094 3.906 27 H 0.236 0.764 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.115 0.885 35 H 0.089 0.911 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.111 0.889 40 H 0.064 0.936 41 H 0.111 0.889 42 H 0.115 0.885 43 H 0.109 0.891 44 H 0.277 0.723 45 H 0.124 0.876 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.502 -14.729 25.739 35.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.214 4.214 3 C -0.046 4.046 4 C -0.135 4.135 5 C -0.168 4.168 6 C 0.302 3.698 7 O -0.467 6.467 8 N -0.328 5.328 9 C -0.031 4.031 10 C -0.236 4.236 11 C 0.017 3.983 12 C -0.033 4.033 13 N -0.384 5.384 14 C 0.355 3.645 15 O -0.441 6.441 16 C -0.250 4.250 17 S 0.051 5.949 18 C -0.677 4.677 19 H 0.082 0.918 20 C -0.157 4.157 21 N -0.552 5.552 22 Si 0.734 3.266 23 H -0.188 1.188 24 H -0.181 1.181 25 H -0.162 1.162 26 C -0.029 4.029 27 H 0.252 0.748 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.133 0.867 35 H 0.107 0.893 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.129 0.871 40 H 0.083 0.917 41 H 0.129 0.871 42 H 0.133 0.867 43 H 0.128 0.872 44 H 0.087 0.913 45 H 0.142 0.858 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.570 -15.488 23.650 34.383 hybrid contribution 0.115 1.194 -0.096 1.203 sum -19.455 -14.294 23.554 33.729 Atomic orbital electron populations 1.25704 0.97196 1.01091 1.00393 1.23921 0.95986 1.00646 1.00889 1.18878 0.83419 1.04550 0.97754 1.21202 0.94276 1.01625 0.96426 1.21810 0.95823 1.06127 0.93070 1.21503 0.81335 0.76012 0.90974 1.90733 1.56204 1.51138 1.48592 1.47975 1.06331 1.62537 1.15908 1.22021 0.93458 0.98313 0.89334 1.22336 1.02905 0.98340 0.99977 1.22515 0.94723 0.95254 0.85791 1.23613 0.88211 0.93168 0.98302 1.49191 1.41717 1.29562 1.17935 1.19503 0.78325 0.85803 0.80906 1.90701 1.67243 1.51552 1.34590 1.23152 1.00580 0.98984 1.02329 1.84760 1.51026 1.33391 1.25701 1.22420 1.27595 1.09207 1.08429 0.91793 1.25516 0.93830 0.95214 1.01128 1.70008 1.26107 1.21872 1.37241 0.85900 0.79179 0.81530 0.79973 1.18836 1.18073 1.16168 1.23841 0.93377 1.00995 0.84663 0.74775 0.87323 0.87414 0.93084 0.92993 0.85228 0.85479 0.86721 0.89251 0.92858 0.91576 0.89436 0.87148 0.91713 0.87145 0.86657 0.87229 0.91302 0.85817 0.88716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.03 19.25 74.32 1.43 -1.60 16 2 C -0.21 -2.98 13.34 31.13 0.42 -2.56 16 3 C -0.01 -0.07 5.70 28.79 0.16 0.10 16 4 C -0.10 -1.05 4.46 30.59 0.14 -0.91 16 5 C -0.13 -0.71 4.38 29.85 0.13 -0.57 16 6 C 0.51 7.53 7.66 87.66 0.67 8.20 16 7 O -0.59 -15.13 15.58 -3.05 -0.05 -15.18 16 8 N -0.60 -6.63 2.71 -796.63 -2.15 -8.78 16 9 C 0.09 0.28 5.05 86.38 0.44 0.72 16 10 C -0.18 -0.42 9.93 71.98 0.71 0.30 16 11 C 0.12 2.07 4.49 45.55 0.20 2.28 16 12 C 0.09 1.84 8.19 83.17 0.68 2.53 16 13 N -0.65 -16.74 3.69 -857.89 -3.16 -19.91 16 14 C 0.57 20.74 8.10 87.66 0.71 21.45 16 15 O -0.56 -25.63 16.64 -3.03 -0.05 -25.68 16 16 C -0.10 -3.86 5.98 71.24 0.43 -3.44 16 17 S -0.18 -8.99 18.55 -56.49 -1.05 -10.04 16 18 C -0.53 -30.82 10.04 67.95 0.68 -30.14 16 19 H 0.06 3.91 8.03 -2.91 -0.02 3.88 16 20 C 0.05 2.86 5.50 84.86 0.47 3.33 16 21 N -0.91 -55.43 13.97 21.65 0.30 -55.13 16 22 Si 0.91 45.10 27.74 68.60 1.90 47.00 16 23 H -0.26 -12.79 7.11 99.48 0.71 -12.09 16 24 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.24 -11.77 6.74 99.48 0.67 -11.10 16 26 C 0.09 1.49 6.97 83.27 0.58 2.07 16 27 H 0.24 1.63 7.80 -4.42 -0.03 1.60 16 28 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.11 0.33 8.14 -2.38 -0.02 0.31 16 30 H 0.05 0.79 8.10 -2.39 -0.02 0.77 16 31 H 0.05 0.79 8.10 -2.39 -0.02 0.77 16 32 H 0.13 -0.08 7.24 -2.39 -0.02 -0.10 16 33 H 0.13 0.04 6.92 -2.39 -0.02 0.02 16 34 H 0.11 -0.25 6.48 -2.39 -0.02 -0.26 16 35 H 0.09 0.26 6.22 -2.39 -0.01 0.24 16 36 H 0.05 0.28 6.44 -2.39 -0.02 0.26 16 37 H 0.07 0.11 6.92 -2.39 -0.02 0.10 16 38 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 39 H 0.11 2.44 7.44 -2.39 -0.02 2.42 16 40 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.11 1.68 7.37 -2.39 -0.02 1.66 16 42 H 0.12 4.03 8.14 -2.39 -0.02 4.01 16 43 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 44 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 45 H 0.12 1.26 5.33 -2.39 -0.01 1.25 16 46 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -85.89 396.57 4.53 -81.36 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: 0.94 Total: 4.62 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 7.85 Total: 1.74 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: -5.02 Total: -83.82 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -0.10 Total: -40.86 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.90 Total: 47.00 kcal Atomic # 16 Polarization: -8.99 SS G_CDS: -1.05 Total: -10.04 kcal Total: -85.89 4.53 -81.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079679723.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.806 kcal (2) G-P(sol) polarization free energy of solvation -85.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds