Wall clock time and date at job start Tue Mar 31 2020 21:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.46970 * 2 1 4 4 C 1.34779 * 119.99413 * 276.17229 * 3 2 1 5 5 O 1.21287 * 119.99450 * 180.02562 * 4 3 2 6 6 C 1.50698 * 120.00448 * 359.97438 * 4 3 2 7 7 H 1.08993 * 115.54886 * 325.67656 * 6 4 3 8 8 C 1.53002 * 117.49364 * 111.38115 * 6 4 3 9 9 C 1.52993 * 117.49939 * 180.02562 * 6 4 3 10 10 C 1.52990 * 138.58883 * 121.62171 * 9 6 4 11 11 C 1.52995 * 138.58907 * 23.40273 * 9 6 4 12 12 C 1.46497 * 120.00404 * 96.17745 * 3 2 1 13 13 C 1.53950 * 113.73774 * 318.20104 * 12 3 2 14 14 N 1.47584 * 86.11740 * 90.73798 * 13 12 3 15 15 C 1.34775 * 134.49463 * 204.63837 * 14 13 12 16 16 O 1.21277 * 120.00169 * 180.02562 * 15 14 13 17 17 C 1.50706 * 119.99589 * 359.97438 * 15 14 13 18 18 S 1.81002 * 109.46809 * 179.97438 * 17 15 14 19 19 C 1.76203 * 99.99957 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99495 * 0.02562 * 19 18 17 21 21 C 1.38799 * 119.99795 * 180.02562 * 19 18 17 22 22 N 1.31626 * 120.00000 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99495 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47188 * 60.00063 * 23 21 19 25 25 H 1.48500 * 109.46690 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47114 * 299.99536 * 23 21 19 27 27 C 1.47583 * 91.01596 * 24.63938 * 14 13 12 28 28 H 1.09004 * 109.46963 * 305.00474 * 1 2 3 29 29 H 1.08999 * 109.47383 * 65.00283 * 1 2 3 30 30 H 1.09002 * 109.47328 * 185.00359 * 1 2 3 31 31 H 1.09000 * 109.47272 * 239.99715 * 2 1 3 32 32 H 1.09002 * 109.47040 * 119.99766 * 2 1 3 33 33 H 1.09001 * 117.49731 * 214.98102 * 8 6 4 34 34 H 1.08994 * 117.50256 * 359.97438 * 8 6 4 35 35 H 1.09000 * 117.49869 * 336.59826 * 10 9 6 36 36 H 1.09005 * 117.49735 * 121.62129 * 10 9 6 37 37 H 1.08995 * 117.49817 * 238.38456 * 11 9 6 38 38 H 1.09003 * 117.49718 * 23.38591 * 11 9 6 39 39 H 1.08997 * 113.01813 * 186.54106 * 12 3 2 40 40 H 1.08999 * 113.76857 * 205.04008 * 13 12 3 41 41 H 1.09000 * 113.77182 * 336.44092 * 13 12 3 42 42 H 1.08997 * 109.47411 * 299.99911 * 17 15 14 43 43 H 1.08997 * 109.47164 * 60.00629 * 17 15 14 44 44 H 0.97008 * 119.99858 * 180.02562 * 22 21 19 45 45 H 1.08990 * 113.77285 * 221.05866 * 27 14 13 46 46 H 1.08999 * 113.87198 * 89.67003 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1245 2.0583 -1.1605 5 8 2.5292 3.2017 -1.1606 6 6 1.7416 1.3945 -2.4581 7 1 1.9489 0.3261 -2.5186 8 6 0.4950 1.9146 -3.1766 9 6 1.8853 2.2155 -3.7410 10 6 2.6230 2.1340 -5.0789 11 6 2.6814 3.4188 -4.2501 12 6 2.3912 2.0264 1.2613 13 6 1.4185 1.7340 2.4182 14 7 2.2876 0.5812 2.7245 15 6 2.1053 -0.5998 3.3478 16 8 3.0300 -1.3769 3.4569 17 6 0.7528 -0.9541 3.9102 18 16 0.8289 -2.5913 4.6783 19 6 -0.8360 -2.7462 5.2340 20 1 -1.5421 -1.9493 5.0528 21 6 -1.2400 -3.8924 5.9045 22 7 -0.3795 -4.8638 6.1248 23 14 -3.0053 -4.0569 6.4929 24 1 -3.9243 -3.9793 5.3291 25 1 -3.1799 -5.3646 7.1746 26 1 -3.3150 -2.9579 7.4424 27 6 3.4364 1.2409 2.0740 28 1 -0.3633 0.5895 0.8418 29 1 -0.3634 0.4343 -0.9314 30 1 -0.3634 -1.0238 0.0896 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 -0.1183 1.1882 -3.7100 34 1 -0.0484 2.7365 -2.7107 35 1 3.5231 1.5207 -5.1207 36 1 2.0207 2.1481 -5.9873 37 1 2.1176 4.2780 -4.6132 38 1 3.6198 3.6510 -3.7465 39 1 2.6296 3.0836 1.1450 40 1 1.4153 2.5000 3.1937 41 1 0.4173 1.4545 2.0905 42 1 0.4650 -0.2148 4.6575 43 1 0.0165 -0.9642 3.1066 44 1 -0.6620 -5.6650 6.5931 45 1 4.0461 0.5678 1.4714 46 1 4.0272 1.8623 2.7469 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080623835.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:47 Heat of formation + Delta-G solvation = 41.421587 kcal Electronic energy + Delta-G solvation = -27153.864867 eV Core-core repulsion = 23366.930039 eV Total energy + Delta-G solvation = -3786.934829 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.20144 -39.72335 -38.00308 -37.21399 -35.31606 -32.87161 -32.46724 -31.23102 -29.91945 -27.97874 -26.28733 -25.49979 -24.84260 -23.58968 -22.70242 -21.69070 -20.02726 -19.14401 -18.53785 -17.88789 -17.71756 -16.85621 -16.35095 -15.72261 -15.52501 -15.33862 -15.15654 -14.83926 -14.78330 -14.42919 -13.94564 -13.89982 -13.67052 -13.18199 -13.00637 -12.91148 -12.63275 -12.59124 -12.27826 -12.05433 -11.97592 -11.78921 -11.59257 -11.47386 -11.09893 -11.07146 -11.06159 -10.79984 -10.51085 -10.44226 -10.31190 -9.95137 -9.87046 -9.42219 -9.09687 -8.97537 -8.61408 -8.28847 -6.55085 -6.25217 -3.96521 2.18311 2.50310 2.67187 3.00723 3.20401 3.21146 3.26040 3.36195 3.41605 3.50233 3.91858 4.16360 4.18151 4.22750 4.43635 4.47562 4.63745 4.78931 4.89489 4.97510 5.04257 5.09761 5.10538 5.20194 5.23607 5.26226 5.30760 5.31100 5.35153 5.38097 5.44184 5.47025 5.54078 5.60689 5.62063 5.69789 5.76472 5.85657 5.86081 5.94110 6.05580 6.12855 6.31299 7.11385 7.55438 7.73722 7.91945 8.31185 8.47179 9.19931 10.82086 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018903 B = 0.002477 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.862078 B =11303.498818 C =12055.973048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.096 3.904 3 N -0.588 5.588 4 C 0.548 3.452 5 O -0.535 6.535 6 C -0.140 4.140 7 H 0.126 0.874 8 C -0.098 4.098 9 C -0.202 4.202 10 C -0.130 4.130 11 C -0.113 4.113 12 C 0.108 3.892 13 C 0.089 3.911 14 N -0.650 5.650 15 C 0.554 3.446 16 O -0.513 6.513 17 C -0.146 4.146 18 S -0.059 6.059 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.097 3.903 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.124 0.876 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.269 0.731 45 H 0.083 0.917 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.665 16.414 -19.413 25.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.026 4.026 3 N -0.319 5.319 4 C 0.337 3.663 5 O -0.411 6.411 6 C -0.161 4.161 7 H 0.144 0.856 8 C -0.135 4.135 9 C -0.203 4.203 10 C -0.167 4.167 11 C -0.150 4.150 12 C 0.003 3.997 13 C -0.035 4.035 14 N -0.389 5.389 15 C 0.344 3.656 16 O -0.387 6.387 17 C -0.296 4.296 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.027 4.027 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.125 0.875 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.142 0.858 40 H 0.115 0.885 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.079 0.921 45 H 0.102 0.898 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.262 15.450 -19.053 24.898 hybrid contribution -2.273 0.554 0.563 2.406 sum 1.990 16.004 -18.491 24.535 Atomic orbital electron populations 1.22328 0.95204 1.03250 1.02359 1.21788 0.95028 0.81554 1.04277 1.47593 1.64724 1.14417 1.05212 1.19707 0.76906 0.85633 0.84038 1.90680 1.45935 1.17701 1.86813 1.21991 1.04951 0.99540 0.89570 0.85640 1.22665 0.88705 1.02235 0.99869 1.21193 0.99480 1.04739 0.94891 1.22769 1.00982 1.00789 0.92131 1.22593 1.00826 0.91034 1.00527 1.22506 0.95375 0.98550 0.83275 1.23721 0.96915 0.87658 0.95196 1.50209 1.13404 1.16032 1.59289 1.20061 0.90429 0.79308 0.75793 1.90727 1.43613 1.48561 1.55793 1.23488 0.95723 1.06950 1.03447 1.85416 1.15903 1.10613 1.71341 1.22800 0.95763 1.06515 1.43297 0.91011 1.24988 0.98585 0.94754 0.95200 1.70006 1.34539 1.06682 1.39006 0.86228 0.82766 0.77612 0.78925 1.19928 1.20787 1.19928 1.23542 0.91403 0.94219 0.93523 0.91971 0.92246 0.90791 0.90494 0.88731 0.87487 0.88066 0.88512 0.88308 0.88563 0.88219 0.85831 0.88522 0.89142 0.89400 0.89414 0.92090 0.89834 0.88805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 10.07 37.16 0.37 -1.24 16 2 C 0.10 0.97 5.21 -4.04 -0.02 0.95 16 3 N -0.59 -5.98 2.71 -167.89 -0.45 -6.44 16 4 C 0.55 6.06 7.41 -10.99 -0.08 5.98 16 5 O -0.53 -7.35 15.71 5.55 0.09 -7.26 16 6 C -0.14 -1.24 4.76 -91.78 -0.44 -1.68 16 7 H 0.13 0.97 6.53 -51.93 -0.34 0.63 16 8 C -0.10 -0.74 9.91 -26.71 -0.26 -1.00 16 9 C -0.20 -1.76 5.06 -154.50 -0.78 -2.54 16 10 C -0.13 -0.90 10.53 -26.73 -0.28 -1.18 16 11 C -0.11 -0.94 10.16 -26.73 -0.27 -1.21 16 12 C 0.11 1.05 4.54 -70.13 -0.32 0.73 16 13 C 0.09 0.87 7.89 -2.97 -0.02 0.85 16 14 N -0.65 -8.72 2.20 -178.51 -0.39 -9.11 16 15 C 0.55 10.24 7.04 -10.98 -0.08 10.16 16 16 O -0.51 -11.64 16.59 5.56 0.09 -11.54 16 17 C -0.15 -2.89 5.91 36.01 0.21 -2.67 16 18 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 19 C -0.54 -14.97 9.50 30.94 0.29 -14.67 16 20 H 0.07 1.89 7.80 -52.48 -0.41 1.49 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -25.82 13.22 55.49 0.73 -25.08 16 23 Si 0.92 21.08 29.55 -169.99 -5.02 16.06 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 C 0.10 1.07 8.18 -2.97 -0.02 1.04 16 28 H 0.06 0.60 5.65 -51.93 -0.29 0.31 16 29 H 0.06 0.48 7.30 -51.93 -0.38 0.10 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.68 6.28 -51.93 -0.33 0.35 16 32 H 0.09 1.21 5.05 -51.93 -0.26 0.95 16 33 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.12 1.15 7.20 -51.93 -0.37 0.78 16 40 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.09 0.87 5.50 -51.93 -0.29 0.59 16 42 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 43 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 44 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 390.85 15.07 5.89 5.89 Total: -1.00 -35.20 390.85 -9.95 -45.15 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -6.88 Total: 0.64 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -1.80 Total: -4.50 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: -0.11 Total: -40.64 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: 0.18 Total: -18.81 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.20 -9.95 -45.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080623835.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.572 kcal (2) G-P(sol) polarization free energy of solvation -35.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds