Wall clock time and date at job start Tue Mar 31 2020 21:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.46970 * 2 1 4 4 C 1.34779 * 119.99413 * 276.17229 * 3 2 1 5 5 O 1.21287 * 119.99450 * 180.02562 * 4 3 2 6 6 C 1.50698 * 120.00448 * 359.97438 * 4 3 2 7 7 H 1.08993 * 115.54886 * 325.67656 * 6 4 3 8 8 C 1.53002 * 117.49364 * 111.38115 * 6 4 3 9 9 C 1.52993 * 117.49939 * 180.02562 * 6 4 3 10 10 C 1.52990 * 138.58883 * 121.62171 * 9 6 4 11 11 C 1.52995 * 138.58907 * 23.40273 * 9 6 4 12 12 C 1.46497 * 120.00404 * 96.17745 * 3 2 1 13 13 C 1.53950 * 113.73774 * 318.20104 * 12 3 2 14 14 N 1.47584 * 86.11740 * 90.73798 * 13 12 3 15 15 C 1.34775 * 134.49463 * 204.63837 * 14 13 12 16 16 O 1.21277 * 120.00169 * 180.02562 * 15 14 13 17 17 C 1.50706 * 119.99589 * 359.97438 * 15 14 13 18 18 S 1.81002 * 109.46809 * 179.97438 * 17 15 14 19 19 C 1.76203 * 99.99957 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99495 * 0.02562 * 19 18 17 21 21 C 1.38799 * 119.99795 * 180.02562 * 19 18 17 22 22 N 1.31626 * 120.00000 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99495 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47188 * 60.00063 * 23 21 19 25 25 H 1.48500 * 109.46690 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47114 * 299.99536 * 23 21 19 27 27 C 1.47583 * 91.01596 * 24.63938 * 14 13 12 28 28 H 1.09004 * 109.46963 * 305.00474 * 1 2 3 29 29 H 1.08999 * 109.47383 * 65.00283 * 1 2 3 30 30 H 1.09002 * 109.47328 * 185.00359 * 1 2 3 31 31 H 1.09000 * 109.47272 * 239.99715 * 2 1 3 32 32 H 1.09002 * 109.47040 * 119.99766 * 2 1 3 33 33 H 1.09001 * 117.49731 * 214.98102 * 8 6 4 34 34 H 1.08994 * 117.50256 * 359.97438 * 8 6 4 35 35 H 1.09000 * 117.49869 * 336.59826 * 10 9 6 36 36 H 1.09005 * 117.49735 * 121.62129 * 10 9 6 37 37 H 1.08995 * 117.49817 * 238.38456 * 11 9 6 38 38 H 1.09003 * 117.49718 * 23.38591 * 11 9 6 39 39 H 1.08997 * 113.01813 * 186.54106 * 12 3 2 40 40 H 1.08999 * 113.76857 * 205.04008 * 13 12 3 41 41 H 1.09000 * 113.77182 * 336.44092 * 13 12 3 42 42 H 1.08997 * 109.47411 * 299.99911 * 17 15 14 43 43 H 1.08997 * 109.47164 * 60.00629 * 17 15 14 44 44 H 0.97008 * 119.99858 * 180.02562 * 22 21 19 45 45 H 1.08990 * 113.77285 * 221.05866 * 27 14 13 46 46 H 1.08999 * 113.87198 * 89.67003 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1245 2.0583 -1.1605 5 8 2.5292 3.2017 -1.1606 6 6 1.7416 1.3945 -2.4581 7 1 1.9489 0.3261 -2.5186 8 6 0.4950 1.9146 -3.1766 9 6 1.8853 2.2155 -3.7410 10 6 2.6230 2.1340 -5.0789 11 6 2.6814 3.4188 -4.2501 12 6 2.3912 2.0264 1.2613 13 6 1.4185 1.7340 2.4182 14 7 2.2876 0.5812 2.7245 15 6 2.1053 -0.5998 3.3478 16 8 3.0300 -1.3769 3.4569 17 6 0.7528 -0.9541 3.9102 18 16 0.8289 -2.5913 4.6783 19 6 -0.8360 -2.7462 5.2340 20 1 -1.5421 -1.9493 5.0528 21 6 -1.2400 -3.8924 5.9045 22 7 -0.3795 -4.8638 6.1248 23 14 -3.0053 -4.0569 6.4929 24 1 -3.9243 -3.9793 5.3291 25 1 -3.1799 -5.3646 7.1746 26 1 -3.3150 -2.9579 7.4424 27 6 3.4364 1.2409 2.0740 28 1 -0.3633 0.5895 0.8418 29 1 -0.3634 0.4343 -0.9314 30 1 -0.3634 -1.0238 0.0896 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 -0.1183 1.1882 -3.7100 34 1 -0.0484 2.7365 -2.7107 35 1 3.5231 1.5207 -5.1207 36 1 2.0207 2.1481 -5.9873 37 1 2.1176 4.2780 -4.6132 38 1 3.6198 3.6510 -3.7465 39 1 2.6296 3.0836 1.1450 40 1 1.4153 2.5000 3.1937 41 1 0.4173 1.4545 2.0905 42 1 0.4650 -0.2148 4.6575 43 1 0.0165 -0.9642 3.1066 44 1 -0.6620 -5.6650 6.5931 45 1 4.0461 0.5678 1.4714 46 1 4.0272 1.8623 2.7469 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080623835.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:46 Heat of formation + Delta-G solvation = 20.769155 kcal Electronic energy + Delta-G solvation = -27154.760424 eV Core-core repulsion = 23366.930039 eV Total energy + Delta-G solvation = -3787.830385 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.14877 -40.68744 -39.12312 -38.13068 -36.23603 -34.58740 -33.51350 -32.36321 -31.08100 -29.16487 -27.69084 -27.15622 -25.65656 -24.41941 -23.27229 -22.57120 -20.96681 -20.14893 -19.62902 -19.31816 -18.66934 -18.12044 -17.38406 -16.93085 -16.86350 -16.60720 -16.24652 -15.87603 -15.77904 -15.57215 -15.29602 -14.80075 -14.70827 -14.58421 -14.19337 -13.93383 -13.64412 -13.55031 -13.40874 -13.20797 -13.14046 -12.87064 -12.69083 -12.63904 -12.47780 -12.35215 -12.33857 -11.91288 -11.75591 -11.14831 -11.13104 -11.08597 -10.93392 -10.87675 -10.77255 -10.29233 -9.86441 -9.72031 -8.68023 -8.34654 -6.13193 1.19850 1.36858 1.42247 1.43748 1.52090 1.55619 1.72905 1.94621 2.27079 2.72385 2.78641 2.99547 3.15862 3.29605 3.34760 3.46605 3.59433 3.82811 3.87911 3.93469 4.07715 4.12740 4.25510 4.29600 4.39750 4.42067 4.45158 4.48931 4.53579 4.57434 4.63095 4.67309 4.76136 4.78357 4.81279 4.83423 4.93833 4.99081 5.03217 5.03302 5.28255 5.33498 5.41252 5.48015 6.19365 6.26740 6.51919 7.06523 7.07284 7.07964 8.74194 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018903 B = 0.002477 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.862078 B =11303.498818 C =12055.973048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.100 3.900 3 N -0.586 5.586 4 C 0.547 3.453 5 O -0.565 6.565 6 C -0.149 4.149 7 H 0.137 0.863 8 C -0.083 4.083 9 C -0.224 4.224 10 C -0.113 4.113 11 C -0.126 4.126 12 C 0.116 3.884 13 C 0.092 3.908 14 N -0.643 5.643 15 C 0.557 3.443 16 O -0.567 6.567 17 C -0.118 4.118 18 S -0.148 6.148 19 C -0.544 4.544 20 H 0.082 0.918 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.997 3.003 24 H -0.261 1.261 25 H -0.280 1.280 26 H -0.263 1.263 27 C 0.096 3.904 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.129 0.871 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.136 0.864 40 H 0.127 0.873 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.106 0.894 44 H 0.271 0.729 45 H 0.070 0.930 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.632 18.182 -20.662 27.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.023 4.023 3 N -0.317 5.317 4 C 0.337 3.663 5 O -0.444 6.444 6 C -0.170 4.170 7 H 0.155 0.845 8 C -0.120 4.120 9 C -0.225 4.225 10 C -0.150 4.150 11 C -0.163 4.163 12 C 0.011 3.989 13 C -0.030 4.030 14 N -0.380 5.380 15 C 0.346 3.654 16 O -0.446 6.446 17 C -0.269 4.269 18 S 0.079 5.921 19 C -0.692 4.692 20 H 0.100 0.900 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.819 3.181 24 H -0.185 1.185 25 H -0.205 1.205 26 H -0.187 1.187 27 C -0.028 4.028 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.147 0.853 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.135 0.865 37 H 0.121 0.879 38 H 0.102 0.898 39 H 0.154 0.846 40 H 0.145 0.855 41 H 0.115 0.885 42 H 0.120 0.880 43 H 0.124 0.876 44 H 0.080 0.920 45 H 0.089 0.911 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.218 17.273 -20.331 26.770 hybrid contribution -1.547 0.152 0.852 1.773 sum 0.671 17.425 -19.479 26.144 Atomic orbital electron populations 1.22283 0.94306 1.02936 1.03142 1.21731 0.95678 0.81305 1.03583 1.47645 1.64353 1.14350 1.05348 1.20075 0.76170 0.85279 0.84726 1.90666 1.47425 1.19067 1.87260 1.22027 1.06404 0.99946 0.88626 0.84540 1.22747 0.88192 1.02216 0.98879 1.21443 1.00468 1.05039 0.95555 1.22852 1.00912 0.99245 0.91945 1.22599 1.00369 0.91881 1.01445 1.22467 0.94663 0.98755 0.82999 1.24052 0.96728 0.86416 0.95815 1.50147 1.15624 1.15273 1.56934 1.19707 0.89125 0.80474 0.76058 1.90703 1.44747 1.50720 1.58422 1.23267 0.97486 1.02426 1.03747 1.85603 1.16979 1.16734 1.72760 1.23131 0.95793 1.07044 1.43248 0.89969 1.26112 1.03604 0.94209 0.95140 1.70176 1.37077 1.07414 1.40065 0.85025 0.76547 0.77811 0.78763 1.18502 1.20485 1.18746 1.23803 0.91257 0.93890 0.93802 0.92224 0.90588 0.91444 0.89246 0.91435 0.85293 0.88504 0.88154 0.86520 0.87901 0.89832 0.84630 0.85524 0.88497 0.87962 0.87560 0.91994 0.91106 0.86484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 10.07 71.98 0.72 -2.11 16 2 C 0.10 1.89 5.21 86.38 0.45 2.34 16 3 N -0.59 -11.01 2.71 -803.47 -2.18 -13.18 16 4 C 0.55 11.32 7.41 87.66 0.65 11.97 16 5 O -0.57 -14.98 15.71 -3.05 -0.05 -15.03 16 6 C -0.15 -2.39 4.76 -11.54 -0.05 -2.44 16 7 H 0.14 1.83 6.53 -2.39 -0.02 1.82 16 8 C -0.08 -1.06 9.91 30.61 0.30 -0.76 16 9 C -0.22 -3.51 5.06 -52.17 -0.26 -3.78 16 10 C -0.11 -1.34 10.53 30.59 0.32 -1.02 16 11 C -0.13 -1.99 10.16 30.59 0.31 -1.68 16 12 C 0.12 2.02 4.54 46.75 0.21 2.24 16 13 C 0.09 1.55 7.89 86.48 0.68 2.24 16 14 N -0.64 -16.44 2.20 -837.07 -1.84 -18.28 16 15 C 0.56 20.59 7.04 87.66 0.62 21.21 16 16 O -0.57 -26.61 16.59 -3.02 -0.05 -26.66 16 17 C -0.12 -4.64 5.91 71.24 0.42 -4.22 16 18 S -0.15 -8.12 20.57 -56.49 -1.16 -9.28 16 19 C -0.54 -30.54 9.50 67.95 0.65 -29.90 16 20 H 0.08 4.27 7.80 -2.91 -0.02 4.24 16 21 C 0.01 0.80 5.49 84.86 0.47 1.26 16 22 N -0.91 -55.40 13.22 21.65 0.29 -55.12 16 23 Si 1.00 42.85 29.55 68.60 2.03 44.87 16 24 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 25 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 27 C 0.10 1.97 8.18 86.48 0.71 2.68 16 28 H 0.06 1.02 5.65 -2.38 -0.01 1.01 16 29 H 0.08 1.02 7.30 -2.39 -0.02 1.01 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.09 1.46 6.28 -2.39 -0.01 1.45 16 32 H 0.07 1.70 5.05 -2.39 -0.01 1.69 16 33 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.14 2.19 7.20 -2.39 -0.02 2.18 16 40 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.10 1.58 5.50 -2.39 -0.01 1.57 16 42 H 0.10 3.71 8.14 -2.40 -0.02 3.69 16 43 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 44 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 45 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -79.25 390.85 4.22 -75.03 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.99 Total: 19.62 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 6.19 Total: -1.96 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -3.73 Total: -86.58 kcal Atomic # 8 Polarization: -41.60 SS G_CDS: -0.10 Total: -41.70 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: -8.12 SS G_CDS: -1.16 Total: -9.28 kcal Total: -79.25 4.22 -75.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080623835.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.803 kcal (2) G-P(sol) polarization free energy of solvation -79.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds