Wall clock time and date at job start Tue Mar 31 2020 20:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47305 * 2 1 4 4 C 1.50694 * 109.47358 * 120.00361 * 2 1 3 5 5 O 1.21281 * 120.00586 * 120.00097 * 4 2 1 6 6 N 1.34782 * 119.99869 * 299.99707 * 4 2 1 7 7 C 1.46499 * 119.99795 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47060 * 180.02562 * 7 6 4 9 9 C 1.53009 * 109.55147 * 60.13157 * 8 7 6 10 10 C 1.53290 * 109.51589 * 180.25438 * 8 7 6 11 11 N 1.47232 * 108.40967 * 172.23172 * 10 8 7 12 12 C 1.36937 * 121.03256 * 129.46000 * 11 10 8 13 13 H 1.07999 * 119.99830 * 333.77469 * 12 11 10 14 14 C 1.38814 * 119.99671 * 153.77042 * 12 11 10 15 15 N 1.31617 * 119.99660 * 160.02496 * 14 12 11 16 16 Si 1.86793 * 120.00266 * 340.02129 * 14 12 11 17 17 H 1.48503 * 109.46760 * 91.88567 * 16 14 12 18 18 H 1.48497 * 109.47347 * 211.88792 * 16 14 12 19 19 H 1.48498 * 109.47201 * 331.89168 * 16 14 12 20 20 C 1.47155 * 117.98347 * 309.49012 * 11 10 8 21 21 C 1.53294 * 108.41729 * 50.51829 * 20 11 10 22 22 O 1.42960 * 109.51742 * 300.00673 * 8 7 6 23 23 C 1.50704 * 109.47151 * 240.00197 * 2 1 3 24 24 C 1.33392 * 125.19911 * 119.99520 * 23 2 1 25 25 C 1.38427 * 114.91633 * 179.97438 * 24 23 2 26 26 C 1.33387 * 114.92481 * 0.02562 * 25 24 23 27 27 S 1.75884 * 125.20390 * 299.69524 * 23 2 1 28 28 H 1.09003 * 109.47315 * 300.00005 * 1 2 3 29 29 H 1.09004 * 109.47337 * 59.99725 * 1 2 3 30 30 H 1.08997 * 109.47268 * 179.97438 * 1 2 3 31 31 H 0.96992 * 120.00110 * 0.02562 * 6 4 2 32 32 H 1.09004 * 109.47116 * 60.00866 * 7 6 4 33 33 H 1.08996 * 109.47601 * 300.00641 * 7 6 4 34 34 H 1.08996 * 109.46656 * 299.86994 * 9 8 7 35 35 H 1.08998 * 109.46877 * 59.87220 * 9 8 7 36 36 H 1.09001 * 109.46700 * 179.87487 * 9 8 7 37 37 H 1.09001 * 109.68378 * 291.95518 * 10 8 7 38 38 H 1.09000 * 109.68200 * 52.50646 * 10 8 7 39 39 H 0.97002 * 120.00062 * 179.97438 * 15 14 12 40 40 H 1.08998 * 109.68049 * 290.77118 * 20 11 10 41 41 H 1.09003 * 109.67731 * 170.25941 * 20 11 10 42 42 H 1.08998 * 109.51349 * 67.59796 * 21 20 11 43 43 H 1.08996 * 109.51070 * 187.70400 * 21 20 11 44 44 H 1.07998 * 122.54441 * 359.96271 * 24 23 2 45 45 H 1.07996 * 122.53878 * 179.97438 * 25 24 23 46 46 H 1.07991 * 125.21023 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 2.1947 -0.9410 3.6506 8 6 1.6844 -0.2201 4.8999 9 6 0.1543 -0.2218 4.9030 10 6 2.1996 -0.9386 6.1521 11 7 1.8549 -0.1251 7.3299 12 6 1.2230 -0.6799 8.4107 13 1 0.6034 -1.5552 8.2832 14 6 1.3789 -0.1172 9.6700 15 7 0.5033 -0.3742 10.6185 16 14 2.8312 1.0046 10.0185 17 1 2.4431 2.4134 9.7538 18 1 3.2373 0.8617 11.4397 19 1 3.9677 0.6308 9.1389 20 6 2.2096 1.3029 7.3105 21 6 1.6937 1.9123 6.0018 22 8 2.1603 1.1279 4.9014 23 6 2.0323 -0.7104 -1.2305 24 6 2.8023 -0.1644 -2.1730 25 6 3.1404 -1.0126 -3.2135 26 6 2.6444 -2.2470 -3.1163 27 16 1.6990 -2.3882 -1.6398 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.1489 0.5384 2.5436 32 1 3.2847 -0.9413 3.6508 33 1 1.8311 -1.9685 3.6504 34 1 -0.2113 0.2932 4.0146 35 1 -0.2079 -1.2499 4.9019 36 1 -0.2078 0.2901 5.7946 37 1 1.7292 -1.9186 6.2328 38 1 3.2816 -1.0543 6.0900 39 1 0.6124 0.0187 11.4987 40 1 3.2926 1.4130 7.3649 41 1 1.7462 1.8077 8.1582 42 1 0.6038 1.9188 6.0080 43 1 2.0634 2.9330 5.9050 44 1 3.1366 0.8615 -2.1279 45 1 3.7581 -0.6984 -4.0417 46 1 2.8032 -3.0400 -3.8319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108208574.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:34 Heat of formation + Delta-G solvation = -16.256250 kcal Electronic energy + Delta-G solvation = -27559.184540 eV Core-core repulsion = 23769.748612 eV Total energy + Delta-G solvation = -3789.435928 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.22021 -39.21387 -37.82994 -35.25035 -34.49378 -34.17349 -32.07329 -31.41428 -28.83121 -28.44306 -26.77879 -26.05904 -24.87481 -23.28635 -23.14192 -21.55727 -20.36873 -19.55495 -19.10546 -17.83756 -16.98629 -16.77737 -16.23766 -15.87325 -15.55664 -15.41696 -15.13653 -14.60439 -14.25176 -14.11017 -13.89548 -13.82826 -13.50435 -13.26431 -12.89042 -12.81218 -12.52114 -12.46982 -12.42459 -12.23679 -11.98042 -11.86463 -11.71858 -11.64165 -11.48815 -11.05203 -10.86120 -10.77954 -10.41434 -10.33163 -9.91712 -9.70648 -9.57597 -9.44824 -9.03233 -8.82975 -8.62270 -8.48441 -7.07370 -6.03471 -3.40845 0.84039 1.52823 1.92270 2.54117 2.59578 3.18205 3.23891 3.43067 3.45792 3.98321 4.24850 4.44241 4.57486 4.70023 4.73418 4.88805 4.97122 5.09938 5.17875 5.25195 5.28031 5.33845 5.34219 5.40554 5.46483 5.69024 5.73610 5.74534 5.78404 5.84357 5.92003 5.94002 6.03439 6.11463 6.18067 6.19425 6.30309 6.40467 6.43832 6.46496 6.53095 6.69506 7.47501 7.57290 7.79531 8.17355 8.21876 8.79671 9.60647 9.96511 11.12039 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.031407 B = 0.002347 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.320056 B =11927.116915 C =12046.199385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.042 4.042 3 H 0.114 0.886 4 C 0.511 3.489 5 O -0.530 6.530 6 N -0.715 5.715 7 C 0.139 3.861 8 C 0.087 3.913 9 C -0.167 4.167 10 C 0.131 3.869 11 N -0.604 5.604 12 C -0.260 4.260 13 H 0.089 0.911 14 C 0.024 3.976 15 N -0.906 5.906 16 Si 0.884 3.116 17 H -0.289 1.289 18 H -0.302 1.302 19 H -0.271 1.271 20 C 0.089 3.911 21 C 0.046 3.954 22 O -0.380 6.380 23 C -0.156 4.156 24 C -0.141 4.141 25 C -0.137 4.137 26 C -0.226 4.226 27 S 0.141 5.859 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.403 0.597 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.047 0.953 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.034 0.966 39 H 0.264 0.736 40 H 0.034 0.966 41 H 0.081 0.919 42 H 0.056 0.944 43 H 0.085 0.915 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.043 2.549 -25.609 25.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.065 4.065 3 H 0.131 0.869 4 C 0.296 3.704 5 O -0.407 6.407 6 N -0.367 5.367 7 C 0.015 3.985 8 C 0.046 3.954 9 C -0.224 4.224 10 C 0.004 3.996 11 N -0.328 5.328 12 C -0.388 4.388 13 H 0.106 0.894 14 C -0.175 4.175 15 N -0.549 5.549 16 Si 0.715 3.285 17 H -0.216 1.216 18 H -0.231 1.231 19 H -0.196 1.196 20 C -0.037 4.037 21 C -0.032 4.032 22 O -0.299 6.299 23 C -0.274 4.274 24 C -0.171 4.171 25 C -0.168 4.168 26 C -0.362 4.362 27 S 0.406 5.594 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.239 0.761 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.052 0.948 39 H 0.074 0.926 40 H 0.052 0.948 41 H 0.099 0.901 42 H 0.074 0.926 43 H 0.103 0.897 44 H 0.155 0.845 45 H 0.154 0.846 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.294 0.696 -24.934 24.946 hybrid contribution 1.354 2.162 0.024 2.551 sum 1.060 2.858 -24.910 25.096 Atomic orbital electron populations 1.21857 0.91661 1.03294 1.03362 1.19822 0.97643 0.99953 0.89066 0.86861 1.20380 0.80681 0.84907 0.84456 1.90742 1.37329 1.26029 1.86562 1.45879 1.53502 1.32132 1.05149 1.21353 0.99914 0.95515 0.81734 1.22231 0.94017 0.84111 0.95076 1.22258 0.95040 1.02827 1.02294 1.21475 0.97731 0.94681 0.85713 1.44321 1.69425 1.02879 1.16192 1.18887 1.21884 1.13600 0.84439 0.89388 1.25244 0.97972 0.98827 0.95487 1.69817 1.34390 1.46587 1.04115 0.86972 0.85169 0.79943 0.76463 1.21638 1.23055 1.19562 1.22027 0.98203 0.86428 0.97025 1.23088 0.98973 0.93786 0.87366 1.87838 1.73002 1.22065 1.47030 1.23923 1.05736 0.97670 1.00053 1.20057 1.00617 1.01541 0.94916 1.20060 1.03055 0.93216 1.00435 1.25702 1.06673 1.01503 1.02353 1.84319 1.50079 1.09315 1.15700 0.91130 0.90878 0.91750 0.76111 0.90785 0.90008 0.93383 0.91743 0.90197 0.90810 0.94846 0.92650 0.94835 0.90101 0.92559 0.89695 0.84535 0.84584 0.82157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.01 37.15 0.33 -0.73 16 2 C -0.04 -0.39 3.10 -92.93 -0.29 -0.68 16 3 H 0.11 0.85 8.09 -51.93 -0.42 0.44 16 4 C 0.51 6.43 7.12 -10.99 -0.08 6.35 16 5 O -0.53 -8.60 15.23 5.56 0.08 -8.52 16 6 N -0.71 -8.48 5.05 -60.30 -0.30 -8.78 16 7 C 0.14 1.93 4.82 -4.04 -0.02 1.91 16 8 C 0.09 1.35 0.76 -90.47 -0.07 1.28 16 9 C -0.17 -2.43 7.92 37.16 0.29 -2.13 16 10 C 0.13 2.48 5.41 -3.49 -0.02 2.46 16 11 N -0.60 -13.70 2.35 -171.76 -0.40 -14.11 16 12 C -0.26 -6.97 10.10 -15.06 -0.15 -7.12 16 13 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 14 C 0.02 0.67 5.26 -17.43 -0.09 0.58 16 15 N -0.91 -27.03 13.97 55.49 0.78 -26.26 16 16 Si 0.88 21.90 24.28 -169.99 -4.13 17.77 16 17 H -0.29 -6.81 6.58 56.52 0.37 -6.44 16 18 H -0.30 -7.68 7.11 56.52 0.40 -7.27 16 19 H -0.27 -6.68 6.54 56.52 0.37 -6.31 16 20 C 0.09 1.86 4.38 -3.53 -0.02 1.84 16 21 C 0.05 0.77 6.60 37.31 0.25 1.01 16 22 O -0.38 -6.23 9.97 -35.23 -0.35 -6.58 16 23 C -0.16 -1.65 4.61 -36.00 -0.17 -1.81 16 24 C -0.14 -1.36 10.01 -41.21 -0.41 -1.77 16 25 C -0.14 -1.24 10.18 -41.21 -0.42 -1.66 16 26 C -0.23 -2.10 11.23 29.04 0.33 -1.78 16 27 S 0.14 1.52 22.17 -107.50 -2.38 -0.86 16 28 H 0.07 0.44 7.56 -51.93 -0.39 0.05 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.53 8.01 -51.93 -0.42 0.11 16 31 H 0.40 4.11 6.62 -40.82 -0.27 3.84 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.05 0.57 6.88 -51.93 -0.36 0.22 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 1.38 6.11 -51.93 -0.32 1.06 16 37 H 0.07 1.37 7.96 -51.93 -0.41 0.95 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.03 0.72 6.86 -51.93 -0.36 0.37 16 41 H 0.08 1.83 4.60 -51.93 -0.24 1.59 16 42 H 0.06 0.93 6.25 -51.93 -0.32 0.60 16 43 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 44 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 45 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 46 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 372.12 15.07 5.61 5.61 Total: -1.00 -32.23 372.12 -8.56 -40.80 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -6.93 Total: 3.18 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -0.53 Total: -2.25 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.07 Total: -49.15 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.27 Total: -15.10 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.13 Total: 17.77 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -2.38 Total: -0.86 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.23 -8.56 -40.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108208574.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.539 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds