Wall clock time and date at job start Tue Mar 31 2020 20:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.46860 * 2 1 4 4 C 1.50694 * 109.46945 * 239.99842 * 2 1 3 5 5 O 1.21281 * 120.00586 * 240.00242 * 4 2 1 6 6 N 1.34782 * 119.99869 * 59.99853 * 4 2 1 7 7 C 1.46499 * 119.99795 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47060 * 180.02562 * 7 6 4 9 9 C 1.53009 * 109.55147 * 60.13157 * 8 7 6 10 10 C 1.53290 * 109.51589 * 180.25438 * 8 7 6 11 11 N 1.47232 * 108.40967 * 172.23172 * 10 8 7 12 12 C 1.36937 * 121.03256 * 129.46000 * 11 10 8 13 13 H 1.07999 * 119.99830 * 333.77469 * 12 11 10 14 14 C 1.38814 * 119.99671 * 153.77042 * 12 11 10 15 15 N 1.31617 * 119.99660 * 160.02496 * 14 12 11 16 16 Si 1.86793 * 120.00266 * 340.02129 * 14 12 11 17 17 H 1.48503 * 109.46760 * 91.88567 * 16 14 12 18 18 H 1.48497 * 109.47347 * 211.88792 * 16 14 12 19 19 H 1.48498 * 109.47201 * 331.89168 * 16 14 12 20 20 C 1.47155 * 117.98347 * 309.49012 * 11 10 8 21 21 C 1.53294 * 108.41729 * 50.51829 * 20 11 10 22 22 O 1.42960 * 109.51742 * 300.00673 * 8 7 6 23 23 C 1.50704 * 109.47211 * 120.00222 * 2 1 3 24 24 C 1.33393 * 125.20022 * 239.71763 * 23 2 1 25 25 C 1.38430 * 114.91562 * 179.85614 * 24 23 2 26 26 C 1.33388 * 114.92335 * 0.43378 * 25 24 23 27 27 S 1.75885 * 109.59331 * 359.76810 * 26 25 24 28 28 H 1.09004 * 109.46886 * 300.00096 * 1 2 3 29 29 H 1.08992 * 109.47242 * 60.00027 * 1 2 3 30 30 H 1.08996 * 109.47230 * 180.02562 * 1 2 3 31 31 H 0.96992 * 120.00110 * 0.02562 * 6 4 2 32 32 H 1.09004 * 109.47116 * 60.00866 * 7 6 4 33 33 H 1.08996 * 109.47601 * 300.00641 * 7 6 4 34 34 H 1.08996 * 109.46656 * 299.86994 * 9 8 7 35 35 H 1.08998 * 109.46877 * 59.87220 * 9 8 7 36 36 H 1.09001 * 109.46700 * 179.87487 * 9 8 7 37 37 H 1.09001 * 109.68378 * 291.95518 * 10 8 7 38 38 H 1.09000 * 109.68200 * 52.50646 * 10 8 7 39 39 H 0.97002 * 120.00062 * 179.97438 * 15 14 12 40 40 H 1.08998 * 109.68049 * 290.77118 * 20 11 10 41 41 H 1.09003 * 109.67731 * 170.25941 * 20 11 10 42 42 H 1.08998 * 109.51349 * 67.59796 * 21 20 11 43 43 H 1.08996 * 109.51070 * 187.70400 * 21 20 11 44 44 H 1.07998 * 122.53879 * 0.02562 * 24 23 2 45 45 H 1.07993 * 122.53564 * 180.20154 * 25 24 23 46 46 H 1.08001 * 125.20375 * 179.78950 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7295 -1.6965 -1.1192 6 7 1.7066 -0.2500 -2.4546 7 6 2.1954 -0.9403 -3.6507 8 6 1.6858 -0.2188 -4.8999 9 6 2.1974 1.2232 -4.9030 10 6 2.1914 -0.9440 -6.1522 11 7 1.5392 -0.3479 -7.3299 12 6 2.2728 0.0631 -8.4107 13 1 3.3047 0.3554 -8.2833 14 6 1.6903 0.1037 -9.6700 15 7 2.2244 0.8435 -10.6186 16 14 0.1485 -0.8916 -10.0185 17 1 -1.0503 -0.0561 -9.7537 18 1 0.1478 -1.3221 -11.4397 19 1 0.1221 -2.0877 -9.1389 20 6 0.0746 -0.2062 -7.3104 21 6 -0.3278 0.4832 -6.0017 22 8 0.2562 -0.2182 -4.9013 23 6 2.0324 -0.7105 1.2305 24 6 2.8069 -0.1662 2.1703 25 6 3.1409 -1.0130 3.2132 26 6 2.6451 -2.2475 3.1157 27 16 1.6934 -2.3863 1.6431 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.1493 0.5388 -2.5435 32 1 1.8323 -1.9681 -3.6509 33 1 3.2853 -0.9400 -3.6506 34 1 1.8338 1.7395 -4.0146 35 1 3.2874 1.2219 -4.9019 36 1 1.8354 1.7352 -5.7945 37 1 3.2721 -0.8273 -6.2329 38 1 1.9397 -2.0027 -6.0901 39 1 1.8175 0.8717 -11.4987 40 1 -0.3902 -1.1906 -7.3648 41 1 -0.2469 0.3990 -8.1581 42 1 0.0294 1.5130 -6.0078 43 1 -1.4134 0.4750 -5.9048 44 1 3.1454 0.8583 2.1225 45 1 3.7593 -0.6990 4.0410 46 1 2.8035 -3.0404 3.8317 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108208578.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:42 Heat of formation + Delta-G solvation = -37.755434 kcal Electronic energy + Delta-G solvation = -27568.211950 eV Core-core repulsion = 23777.843748 eV Total energy + Delta-G solvation = -3790.368202 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.32127 -40.46406 -38.57636 -36.76612 -35.87307 -34.95606 -33.71877 -33.02105 -29.96676 -29.48850 -28.12753 -27.52904 -25.62680 -24.81433 -24.15011 -23.05720 -21.33744 -20.51803 -20.23763 -19.03094 -18.61457 -17.68181 -17.48138 -17.28412 -16.76177 -16.54045 -16.01048 -15.95269 -15.71966 -15.61722 -15.46162 -14.81146 -14.58824 -14.27401 -14.15873 -13.83658 -13.77203 -13.53939 -13.48143 -13.28387 -13.17759 -13.06481 -12.93440 -12.62519 -12.55416 -12.40800 -12.33448 -12.14359 -12.09418 -11.56501 -11.50415 -11.28365 -11.07471 -10.85440 -10.48700 -10.08098 -9.54618 -9.26974 -8.95661 -8.19201 -5.52191 0.12434 0.80579 1.21427 1.25645 1.40244 1.47862 1.63476 1.84173 2.23564 2.37631 2.67996 3.00969 3.21016 3.54083 3.76343 3.84380 3.90253 3.98465 4.09190 4.25571 4.26643 4.29813 4.33240 4.46156 4.56184 4.65163 4.67477 4.69480 4.73382 4.75702 4.84065 4.84985 4.88290 4.94632 5.02111 5.05651 5.20652 5.25528 5.37555 5.40153 5.42176 5.64585 5.77866 6.08291 6.23113 6.55202 6.81427 7.23823 7.54074 7.94701 9.00096 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.031413 B = 0.002354 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.140706 B =11892.141742 C =11982.428083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.035 4.035 3 H 0.142 0.858 4 C 0.510 3.490 5 O -0.571 6.571 6 N -0.705 5.705 7 C 0.148 3.852 8 C 0.099 3.901 9 C -0.160 4.160 10 C 0.124 3.876 11 N -0.616 5.616 12 C -0.243 4.243 13 H 0.058 0.942 14 C -0.033 4.033 15 N -0.954 5.954 16 Si 0.944 3.056 17 H -0.268 1.268 18 H -0.313 1.313 19 H -0.270 1.270 20 C 0.080 3.920 21 C 0.055 3.945 22 O -0.375 6.375 23 C -0.169 4.169 24 C -0.142 4.142 25 C -0.143 4.143 26 C -0.226 4.226 27 S 0.085 5.915 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.047 0.953 31 H 0.415 0.585 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.032 0.968 39 H 0.262 0.738 40 H 0.031 0.969 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.119 0.881 44 H 0.160 0.840 45 H 0.161 0.839 46 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.861 1.059 28.361 28.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.058 4.058 3 H 0.159 0.841 4 C 0.296 3.704 5 O -0.450 6.450 6 N -0.358 5.358 7 C 0.024 3.976 8 C 0.058 3.942 9 C -0.218 4.218 10 C -0.002 4.002 11 N -0.341 5.341 12 C -0.373 4.373 13 H 0.076 0.924 14 C -0.228 4.228 15 N -0.600 5.600 16 Si 0.774 3.226 17 H -0.194 1.194 18 H -0.242 1.242 19 H -0.195 1.195 20 C -0.045 4.045 21 C -0.023 4.023 22 O -0.294 6.294 23 C -0.287 4.287 24 C -0.173 4.173 25 C -0.173 4.173 26 C -0.362 4.362 27 S 0.350 5.650 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.066 0.934 31 H 0.252 0.748 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.049 0.951 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.137 0.863 44 H 0.177 0.823 45 H 0.178 0.822 46 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -5.298 -0.877 27.743 28.258 hybrid contribution 0.409 0.799 -0.788 1.195 sum -4.889 -0.078 26.955 27.395 Atomic orbital electron populations 1.21859 0.90297 1.02789 1.04836 1.19886 0.98651 1.00505 0.86724 0.84054 1.20981 0.79789 0.84377 0.85236 1.90731 1.39337 1.27775 1.87131 1.45750 1.53304 1.32318 1.04396 1.21096 0.98951 0.95733 0.81858 1.22037 0.81965 0.96226 0.93936 1.22188 1.01826 0.95243 1.02519 1.21655 0.97529 0.95014 0.86031 1.44397 1.02014 1.71651 1.16047 1.18813 0.96464 1.36224 0.85765 0.92404 1.25825 1.01493 0.99966 0.95499 1.69939 1.44197 1.41242 1.04602 0.85983 0.80816 0.80462 0.75344 1.19437 1.24191 1.19475 1.22133 0.84537 0.98734 0.99066 1.23045 0.98934 0.95302 0.84987 1.87860 1.18718 1.76394 1.46458 1.24116 1.06540 0.97035 1.01004 1.20421 0.99665 1.02667 0.94517 1.20423 1.02984 0.92937 1.00972 1.25971 1.06060 1.02403 1.01727 1.84515 1.51177 1.11371 1.17944 0.89284 0.89683 0.93377 0.74780 0.92029 0.89908 0.90122 0.91638 0.92830 0.91160 0.95036 0.92889 0.95066 0.91763 0.92024 0.86272 0.82287 0.82157 0.80295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.01 71.98 0.65 -1.14 16 2 C -0.03 -0.56 3.10 -12.29 -0.04 -0.60 16 3 H 0.14 1.46 8.08 -2.39 -0.02 1.44 16 4 C 0.51 11.85 7.12 87.65 0.62 12.47 16 5 O -0.57 -18.14 15.25 -3.03 -0.05 -18.19 16 6 N -0.71 -14.92 5.05 -463.07 -2.34 -17.25 16 7 C 0.15 3.88 4.82 86.38 0.42 4.29 16 8 C 0.10 2.91 0.76 -10.69 -0.01 2.90 16 9 C -0.16 -4.35 7.92 71.99 0.57 -3.78 16 10 C 0.12 4.63 5.41 86.34 0.47 5.10 16 11 N -0.62 -27.79 2.35 -697.34 -1.64 -29.43 16 12 C -0.24 -13.30 10.10 84.03 0.85 -12.45 16 13 H 0.06 3.45 8.06 -2.91 -0.02 3.42 16 14 C -0.03 -1.87 5.26 84.86 0.45 -1.42 16 15 N -0.95 -58.54 13.97 21.65 0.30 -58.24 16 16 Si 0.94 45.70 24.28 68.60 1.67 47.37 16 17 H -0.27 -11.94 6.58 99.48 0.65 -11.29 16 18 H -0.31 -15.56 7.11 99.48 0.71 -14.85 16 19 H -0.27 -12.84 6.54 99.48 0.65 -12.19 16 20 C 0.08 3.23 4.38 86.35 0.38 3.61 16 21 C 0.05 1.67 6.60 72.08 0.48 2.15 16 22 O -0.38 -11.11 9.97 -148.98 -1.49 -12.60 16 23 C -0.17 -3.27 4.60 24.59 0.11 -3.15 16 24 C -0.14 -2.35 10.02 21.22 0.21 -2.13 16 25 C -0.14 -2.24 10.18 21.22 0.22 -2.02 16 26 C -0.23 -3.89 11.23 66.72 0.75 -3.14 16 27 S 0.09 1.84 22.18 -56.49 -1.25 0.58 16 28 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.08 0.85 7.56 -2.39 -0.02 0.84 16 30 H 0.05 0.78 8.00 -2.39 -0.02 0.76 16 31 H 0.41 6.88 6.62 -92.71 -0.61 6.27 16 32 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.08 2.17 8.14 -2.39 -0.02 2.16 16 34 H 0.08 1.65 6.88 -2.39 -0.02 1.63 16 35 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.05 1.77 6.11 -2.39 -0.01 1.75 16 37 H 0.07 2.64 7.96 -2.39 -0.02 2.62 16 38 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.26 15.34 8.31 -92.71 -0.77 14.56 16 40 H 0.03 1.28 6.86 -2.39 -0.02 1.27 16 41 H 0.06 2.80 4.60 -2.39 -0.01 2.79 16 42 H 0.06 1.85 6.25 -2.39 -0.01 1.83 16 43 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 44 H 0.16 1.82 8.06 -2.91 -0.02 1.79 16 45 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 46 H 0.18 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -71.66 372.13 1.59 -70.06 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.27 Total: 17.01 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 6.12 Total: 0.68 kcal Atomic # 7 Polarization: -101.24 SS G_CDS: -3.68 Total: -104.92 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -1.53 Total: -30.79 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.67 Total: 47.37 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -1.25 Total: 0.58 kcal Total: -71.66 1.59 -70.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108208578.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.308 kcal (2) G-P(sol) polarization free energy of solvation -71.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds