Wall clock time and date at job start Tue Mar 31 2020 21:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81403 * 103.00046 * 2 1 4 4 H 1.09002 * 109.46847 * 55.00200 * 3 2 1 5 5 C 1.53002 * 109.47100 * 294.99888 * 3 2 1 6 6 C 1.50701 * 109.47090 * 174.99979 * 3 2 1 7 7 O 1.21283 * 119.99854 * 24.99917 * 6 3 2 8 8 N 1.34778 * 120.00011 * 204.72790 * 6 3 2 9 9 C 1.46497 * 120.00200 * 180.27908 * 8 6 3 10 10 C 1.53004 * 109.47094 * 179.97438 * 9 8 6 11 11 N 1.46900 * 109.46938 * 179.97438 * 10 9 8 12 12 C 1.46901 * 110.99891 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46870 * 180.02562 * 12 11 10 14 14 C 1.38303 * 119.92637 * 269.72229 * 13 12 11 15 15 C 1.38099 * 120.06820 * 179.73139 * 14 13 12 16 16 C 1.38884 * 119.92753 * 0.56354 * 15 14 13 17 17 O 1.35745 * 120.06966 * 179.68509 * 16 15 14 18 18 C 1.34833 * 117.00451 * 174.48630 * 17 16 15 19 19 H 1.07997 * 119.99332 * 5.06496 * 18 17 16 20 20 C 1.38655 * 120.00088 * 185.05713 * 18 17 16 21 21 N 1.31550 * 120.00240 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99662 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47374 * 359.97438 * 22 20 18 24 24 H 1.48491 * 109.47412 * 120.00032 * 22 20 18 25 25 H 1.48505 * 109.46896 * 240.00321 * 22 20 18 26 26 C 1.38879 * 119.86295 * 359.70920 * 16 15 14 27 27 C 1.38101 * 119.92900 * 359.97438 * 26 16 15 28 28 H 1.08997 * 109.47178 * 59.99826 * 1 2 3 29 29 H 1.09004 * 109.47182 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47328 * 300.00205 * 1 2 3 31 31 H 1.08998 * 109.46711 * 59.99992 * 5 3 2 32 32 H 1.08992 * 109.47080 * 179.97438 * 5 3 2 33 33 H 1.08997 * 109.47105 * 300.00033 * 5 3 2 34 34 H 0.97008 * 119.99593 * 0.27004 * 8 6 3 35 35 H 1.09000 * 109.46909 * 299.99263 * 9 8 6 36 36 H 1.09000 * 109.47260 * 59.99304 * 9 8 6 37 37 H 1.09000 * 109.46834 * 299.99546 * 10 9 8 38 38 H 1.08995 * 109.46749 * 59.99698 * 10 9 8 39 39 H 1.00902 * 110.99813 * 56.04239 * 11 10 9 40 40 H 1.09005 * 109.46719 * 299.99817 * 12 11 10 41 41 H 1.08994 * 109.47276 * 59.99840 * 12 11 10 42 42 H 1.07995 * 119.96731 * 359.97438 * 14 13 12 43 43 H 1.07998 * 120.03974 * 180.27717 * 15 14 13 44 44 H 0.96999 * 120.00093 * 179.97438 * 21 20 18 45 45 H 1.08001 * 120.03155 * 179.97438 * 26 16 15 46 46 H 1.08003 * 119.96234 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2541 0.8419 5 6 1.7428 2.4016 -1.3074 6 6 3.7142 1.9386 0.1238 7 8 4.4584 1.0531 -0.2409 8 7 4.2218 3.0778 0.6348 9 6 5.6725 3.2465 0.7495 10 6 5.9801 4.6175 1.3552 11 7 7.4348 4.7865 1.4708 12 6 7.7684 6.0944 2.0504 13 6 9.2657 6.2313 2.1526 14 6 9.9194 5.8205 3.3000 15 6 11.2920 5.9395 3.3946 16 6 12.0147 6.4832 2.3406 17 8 13.3632 6.6074 2.4330 18 6 14.0154 7.0357 1.3334 19 1 13.4584 7.3405 0.4598 20 6 15.4011 7.0850 1.3243 21 7 16.0795 6.7134 2.3884 22 14 16.3045 7.6790 -0.1990 23 1 15.3193 8.0354 -1.2514 24 1 17.1186 8.8730 0.1424 25 1 17.1938 6.6000 -0.6993 26 6 11.3546 6.9000 1.1919 27 6 9.9826 6.7723 1.1009 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 0.6636 2.2778 -1.3969 32 1 1.9876 3.4637 -1.3072 33 1 2.2354 1.9150 -2.1491 34 1 3.6265 3.7860 0.9265 35 1 6.0794 2.4656 1.3920 36 1 6.1258 3.1765 -0.2392 37 1 5.5732 5.3982 0.7124 38 1 5.5267 4.6879 2.3439 39 1 7.8855 4.6611 0.5768 40 1 7.3742 6.8856 1.4126 41 1 7.3272 6.1748 3.0438 42 1 9.3564 5.4026 4.1214 43 1 11.8025 5.6145 4.2891 44 1 17.0489 6.7475 2.3818 45 1 11.9138 7.3236 0.3708 46 1 9.4688 7.0959 0.2077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123937121.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:57 Heat of formation + Delta-G solvation = -65.334873 kcal Electronic energy + Delta-G solvation = -24908.874631 eV Core-core repulsion = 21117.310495 eV Total energy + Delta-G solvation = -3791.564136 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.89778 -40.76465 -38.74715 -37.31923 -35.48510 -34.38857 -34.16460 -31.82745 -31.64005 -29.69890 -28.99198 -27.42943 -25.88322 -24.85122 -23.60746 -23.07474 -21.96138 -21.61778 -19.84083 -18.88845 -18.50405 -17.86620 -17.11317 -16.67172 -16.53078 -16.36828 -16.25397 -15.83640 -15.55600 -15.35095 -15.25375 -15.14657 -14.86177 -14.74281 -14.37698 -14.29898 -13.93083 -13.84238 -13.72636 -13.43321 -13.26380 -12.99204 -12.96912 -12.72072 -12.61265 -12.48035 -12.31178 -12.22177 -12.11775 -11.98504 -11.16121 -11.05914 -10.80605 -10.80126 -10.21126 -9.75918 -9.36583 -8.89612 -8.74286 -8.47180 -6.15423 0.45003 0.62505 0.68680 1.34713 1.43087 1.47539 1.53065 1.65353 2.03689 2.17473 2.80832 3.12590 3.47081 3.54165 3.69200 3.80781 3.90949 3.98650 4.05302 4.09636 4.16666 4.24768 4.35850 4.37895 4.49487 4.53434 4.61464 4.63423 4.67394 4.77002 4.83203 4.92218 4.93449 4.97017 5.11342 5.12663 5.16282 5.30644 5.33101 5.59138 5.73047 5.82193 6.03566 6.06203 6.26755 6.41085 6.42045 6.97726 7.12646 7.79354 8.76433 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024914 B = 0.001432 C = 0.001407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.579466 B =19549.589695 C =19893.697273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.280 6.280 3 C -0.075 4.075 4 H 0.139 0.861 5 C -0.139 4.139 6 C 0.526 3.474 7 O -0.570 6.570 8 N -0.706 5.706 9 C 0.126 3.874 10 C 0.060 3.940 11 N -0.698 5.698 12 C 0.126 3.874 13 C -0.160 4.160 14 C -0.048 4.048 15 C -0.208 4.208 16 C 0.113 3.887 17 O -0.235 6.235 18 C -0.413 4.413 19 H 0.102 0.898 20 C -0.024 4.024 21 N -0.921 5.921 22 Si 1.019 2.981 23 H -0.251 1.251 24 H -0.268 1.268 25 H -0.270 1.270 26 C -0.245 4.245 27 C -0.061 4.061 28 H 0.093 0.907 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.054 0.946 34 H 0.420 0.580 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.091 0.909 39 H 0.344 0.656 40 H 0.052 0.948 41 H 0.089 0.911 42 H 0.145 0.855 43 H 0.109 0.891 44 H 0.272 0.728 45 H 0.117 0.883 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.312 -3.593 -5.818 36.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.055 6.055 3 C -0.206 4.206 4 H 0.157 0.843 5 C -0.197 4.197 6 C 0.311 3.689 7 O -0.449 6.449 8 N -0.360 5.360 9 C 0.001 3.999 10 C -0.069 4.069 11 N -0.330 5.330 12 C -0.002 4.002 13 C -0.161 4.161 14 C -0.066 4.066 15 C -0.228 4.228 16 C 0.062 3.938 17 O -0.142 6.142 18 C -0.489 4.489 19 H 0.119 0.881 20 C -0.221 4.221 21 N -0.560 5.560 22 Si 0.838 3.162 23 H -0.174 1.174 24 H -0.193 1.193 25 H -0.195 1.195 26 C -0.264 4.264 27 C -0.079 4.079 28 H 0.112 0.888 29 H 0.127 0.873 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.073 0.927 34 H 0.257 0.743 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.110 0.890 39 H 0.162 0.838 40 H 0.070 0.930 41 H 0.108 0.892 42 H 0.163 0.837 43 H 0.128 0.872 44 H 0.081 0.919 45 H 0.135 0.865 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -34.724 -5.468 -5.203 35.535 hybrid contribution 0.122 1.823 -0.942 2.056 sum -34.602 -3.645 -6.146 35.332 Atomic orbital electron populations 1.23566 0.90918 1.07643 1.06441 1.87898 1.10207 1.09258 1.98100 1.23287 0.94851 0.96781 1.05695 0.84292 1.22003 1.03034 1.01684 0.93025 1.20231 0.90032 0.81923 0.76702 1.90766 1.61762 1.42619 1.49716 1.45623 1.08106 1.18436 1.63785 1.21152 0.79992 0.98137 1.00631 1.22016 0.88683 0.94408 1.01831 1.60343 1.08549 1.32510 1.31607 1.20607 0.89553 0.89114 1.00884 1.19659 0.96353 1.05387 0.94720 1.20876 0.91525 0.95965 0.98234 1.20485 0.95163 1.08379 0.98743 1.19976 0.84286 0.94190 0.95327 1.83940 1.15466 1.76577 1.38228 1.21864 0.90127 1.44265 0.92657 0.88079 1.26592 0.96125 0.96974 1.02389 1.70191 1.07990 1.46940 1.30844 0.84525 0.78004 0.78069 0.75572 1.17414 1.19256 1.19466 1.21239 0.96310 1.09799 0.99034 1.20972 0.91936 0.96528 0.98510 0.88813 0.87262 0.88825 0.89077 0.89133 0.92697 0.74251 0.92565 0.92602 0.92584 0.89021 0.83824 0.93000 0.89220 0.83742 0.87242 0.91875 0.86541 0.84175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 10.45 113.37 1.18 0.47 16 2 S -0.28 -4.62 21.10 -56.49 -1.19 -5.82 16 3 C -0.07 -0.81 3.18 29.85 0.09 -0.71 16 4 H 0.14 0.58 8.14 -2.39 -0.02 0.56 16 5 C -0.14 -0.93 9.08 71.98 0.65 -0.28 16 6 C 0.53 9.48 6.95 87.66 0.61 10.09 16 7 O -0.57 -16.80 16.14 -3.04 -0.05 -16.85 16 8 N -0.71 -8.27 5.56 -463.05 -2.57 -10.84 16 9 C 0.13 1.98 5.93 86.38 0.51 2.50 16 10 C 0.06 0.71 5.80 86.30 0.50 1.21 16 11 N -0.70 -12.90 6.49 -517.93 -3.36 -16.26 16 12 C 0.13 2.43 5.81 85.56 0.50 2.93 16 13 C -0.16 -4.65 5.40 -19.83 -0.11 -4.76 16 14 C -0.05 -1.58 9.69 22.25 0.22 -1.36 16 15 C -0.21 -8.98 9.99 22.39 0.22 -8.76 16 16 C 0.11 5.66 6.65 22.58 0.15 5.81 16 17 O -0.24 -14.41 9.76 -22.71 -0.22 -14.64 16 18 C -0.41 -24.34 9.49 67.92 0.64 -23.70 16 19 H 0.10 5.46 5.20 -2.91 -0.02 5.45 16 20 C -0.02 -1.35 5.49 84.83 0.47 -0.88 16 21 N -0.92 -57.25 13.67 21.61 0.30 -56.96 16 22 Si 1.02 43.27 29.55 68.60 2.03 45.30 16 23 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 24 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 26 C -0.24 -10.55 9.17 22.39 0.21 -10.35 16 27 C -0.06 -1.99 9.69 22.25 0.22 -1.77 16 28 H 0.09 0.30 7.14 -2.39 -0.02 0.28 16 29 H 0.11 0.58 8.14 -2.39 -0.02 0.57 16 30 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.09 0.25 6.92 -2.39 -0.02 0.23 16 32 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 34 H 0.42 1.54 8.47 -92.70 -0.79 0.75 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.34 6.72 8.72 -89.69 -0.78 5.93 16 40 H 0.05 0.83 8.08 -2.38 -0.02 0.81 16 41 H 0.09 1.51 8.08 -2.39 -0.02 1.49 16 42 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 43 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 44 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 45 H 0.12 5.14 5.64 -2.91 -0.02 5.13 16 46 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -83.08 400.39 0.43 -82.65 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -0.57 Total: 22.98 kcal Atomic # 6 Polarization: -35.64 SS G_CDS: 6.07 Total: -29.57 kcal Atomic # 7 Polarization: -78.42 SS G_CDS: -5.64 Total: -84.06 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -0.27 Total: -31.49 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: -4.62 SS G_CDS: -1.19 Total: -5.82 kcal Total: -83.08 0.43 -82.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123937121.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.319 kcal (2) G-P(sol) polarization free energy of solvation -83.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds