Wall clock time and date at job start Tue Mar 31 2020 20:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09007 * 109.46665 * 2 1 4 4 C 1.53003 * 109.47186 * 240.00649 * 2 1 3 5 5 C 1.52998 * 109.47358 * 65.86772 * 4 2 1 6 6 H 1.09011 * 109.47161 * 305.27171 * 5 4 2 7 7 C 1.52998 * 109.47139 * 185.27615 * 5 4 2 8 8 N 1.46493 * 109.47066 * 65.27119 * 5 4 2 9 9 C 1.34782 * 119.99971 * 206.95199 * 8 5 4 10 10 O 1.21700 * 120.00022 * 5.34655 * 9 8 5 11 11 C 1.46578 * 120.00075 * 185.33586 * 9 8 5 12 12 C 1.36267 * 125.44419 * 174.84340 * 11 9 8 13 13 C 1.37975 * 114.03099 * 180.02562 * 12 11 9 14 14 C 1.35544 * 113.91571 * 359.97317 * 13 12 11 15 15 S 1.70355 * 111.19656 * 0.04609 * 14 13 12 16 16 C 1.51729 * 123.16997 * 179.97438 * 14 13 12 17 17 C 1.53362 * 107.99717 * 344.33474 * 16 14 13 18 18 O 1.43031 * 109.11811 * 47.86677 * 17 16 14 19 19 C 1.43007 * 114.15242 * 288.42940 * 18 17 16 20 20 N 1.46489 * 109.47451 * 120.00034 * 2 1 3 21 21 C 1.36935 * 120.00238 * 277.45993 * 20 2 1 22 22 H 1.08005 * 120.00010 * 4.91831 * 21 20 2 23 23 C 1.38815 * 120.00190 * 184.92313 * 21 20 2 24 24 N 1.31619 * 120.00047 * 184.33746 * 23 21 20 25 25 Si 1.86799 * 119.99838 * 4.33906 * 23 21 20 26 26 H 1.48500 * 109.47346 * 93.40972 * 25 23 21 27 27 H 1.48502 * 109.47013 * 213.40909 * 25 23 21 28 28 H 1.48495 * 109.47248 * 333.40528 * 25 23 21 29 29 H 1.08998 * 109.46805 * 299.99590 * 1 2 3 30 30 H 1.09000 * 109.47524 * 60.00214 * 1 2 3 31 31 H 1.08998 * 109.46609 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46559 * 305.86858 * 4 2 1 33 33 H 1.08999 * 109.47030 * 185.86835 * 4 2 1 34 34 H 1.09001 * 109.46578 * 299.99701 * 7 5 4 35 35 H 1.08996 * 109.47450 * 59.99717 * 7 5 4 36 36 H 1.09006 * 109.47244 * 180.02562 * 7 5 4 37 37 H 0.97002 * 120.00510 * 26.95564 * 8 5 4 38 38 H 1.08006 * 122.98095 * 0.02562 * 12 11 9 39 39 H 1.09002 * 109.76561 * 224.69496 * 16 14 13 40 40 H 1.08996 * 109.76636 * 103.97259 * 16 14 13 41 41 H 1.08993 * 109.53320 * 167.76076 * 17 16 14 42 42 H 1.09000 * 109.52597 * 287.97939 * 17 16 14 43 43 H 1.08998 * 109.68913 * 171.73919 * 19 18 17 44 44 H 1.09002 * 109.68539 * 292.27878 * 19 18 17 45 45 H 0.97004 * 120.00091 * 97.45184 * 20 2 1 46 46 H 0.97002 * 120.00093 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 1.6541 0.0803 -2.4942 6 1 0.5777 0.2526 -2.4961 7 6 2.0473 -0.7038 -3.7477 8 7 2.3545 1.3669 -2.4831 9 6 1.8192 2.4310 -3.1138 10 8 0.7103 2.3506 -3.6089 11 6 2.5725 3.6852 -3.2034 12 6 2.1841 4.7926 -3.8960 13 6 3.0748 5.8436 -3.8205 14 6 4.1726 5.5807 -3.0703 15 16 4.1209 4.0007 -2.4355 16 6 5.2860 6.5871 -2.8470 17 6 5.1345 7.7006 -3.8907 18 8 3.7715 8.1332 -3.9197 19 6 2.8704 7.1894 -4.5048 20 7 2.0184 -0.6905 1.1960 21 6 2.1016 -0.0207 2.3875 22 1 1.7333 0.9917 2.4647 23 6 2.6592 -0.6428 3.4961 24 7 2.6620 -0.0316 4.6617 25 14 3.4059 -2.3473 3.3335 26 1 4.8621 -2.2267 3.0688 27 1 3.1928 -3.1033 4.5938 28 1 2.7563 -3.0670 2.2087 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.5934 -1.7140 -1.3035 33 1 3.1250 -0.8130 -1.1983 34 1 3.1236 -0.8760 -3.7457 35 1 1.5262 -1.6611 -3.7559 36 1 1.7727 -0.1326 -4.6346 37 1 3.2035 1.4531 -2.0220 38 1 1.2609 4.8431 -4.4544 39 1 6.2533 6.0991 -2.9664 40 1 5.2068 7.0081 -1.8448 41 1 5.7775 8.5394 -3.6245 42 1 5.4172 7.3206 -4.8724 43 1 1.8431 7.5233 -4.3589 44 1 3.0782 7.0954 -5.5707 45 1 2.2829 -1.6224 1.1441 46 1 3.0513 -0.4664 5.4365 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135952319.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:48 Heat of formation + Delta-G solvation = -46.754221 kcal Electronic energy + Delta-G solvation = -26812.496255 eV Core-core repulsion = 23021.737836 eV Total energy + Delta-G solvation = -3790.758419 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.20591 -39.67874 -37.29541 -36.48222 -34.78160 -32.88088 -32.29011 -31.22386 -29.79051 -29.06384 -26.42545 -26.19935 -25.28484 -23.63418 -22.82233 -21.30567 -20.70652 -19.84732 -18.99871 -18.22947 -17.61117 -17.05035 -16.42112 -16.10394 -15.60359 -15.31655 -15.24926 -14.68212 -14.39437 -14.34733 -14.01677 -13.69700 -13.50819 -13.25791 -13.23255 -13.02195 -12.64848 -12.61820 -12.23127 -12.18785 -12.01492 -11.79920 -11.69770 -11.42267 -11.33223 -11.11651 -10.98348 -10.69098 -10.56282 -10.22048 -10.11344 -10.05197 -9.97012 -9.60164 -9.12285 -8.93337 -8.85817 -8.63321 -7.26601 -5.77712 -3.13140 0.27353 1.19471 1.63644 2.02244 3.08127 3.12971 3.34774 3.37981 3.43931 3.44268 4.19211 4.35550 4.53181 4.57521 4.68446 4.76659 4.83981 4.93892 5.00251 5.13091 5.18383 5.22371 5.26775 5.32326 5.47005 5.48585 5.53212 5.61117 5.63369 5.69436 5.82227 5.86876 5.94677 6.06427 6.09610 6.15843 6.23277 6.38477 6.52298 6.56262 6.70022 6.84273 7.04136 7.43183 8.00759 8.12051 8.41683 9.21153 9.93353 10.13969 11.40687 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012944 B = 0.002866 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.610815 B = 9768.255270 C =11075.153894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.177 3.823 3 H 0.052 0.948 4 C -0.138 4.138 5 C 0.142 3.858 6 H 0.098 0.902 7 C -0.162 4.162 8 N -0.715 5.715 9 C 0.594 3.406 10 O -0.532 6.532 11 C -0.265 4.265 12 C -0.046 4.046 13 C -0.164 4.164 14 C -0.200 4.200 15 S 0.231 5.769 16 C -0.085 4.085 17 C 0.066 3.934 18 O -0.376 6.376 19 C 0.128 3.872 20 N -0.751 5.751 21 C -0.241 4.241 22 H 0.088 0.912 23 C 0.003 3.997 24 N -0.934 5.934 25 Si 0.887 3.113 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.278 1.278 29 H 0.056 0.944 30 H 0.041 0.959 31 H 0.045 0.955 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.399 0.601 38 H 0.153 0.847 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.103 0.897 42 H 0.057 0.943 43 H 0.109 0.891 44 H 0.068 0.932 45 H 0.361 0.639 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.757 11.047 -22.502 25.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.068 3.932 3 H 0.070 0.930 4 C -0.176 4.176 5 C 0.038 3.962 6 H 0.116 0.884 7 C -0.220 4.220 8 N -0.366 5.366 9 C 0.380 3.620 10 O -0.410 6.410 11 C -0.386 4.386 12 C -0.079 4.079 13 C -0.177 4.177 14 C -0.320 4.320 15 S 0.502 5.498 16 C -0.124 4.124 17 C -0.013 4.013 18 O -0.294 6.294 19 C 0.049 3.951 20 N -0.394 5.394 21 C -0.371 4.371 22 H 0.106 0.894 23 C -0.192 4.192 24 N -0.582 5.582 25 Si 0.718 3.282 26 H -0.212 1.212 27 H -0.219 1.219 28 H -0.205 1.205 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.233 0.767 38 H 0.170 0.830 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.121 0.879 42 H 0.075 0.925 43 H 0.127 0.873 44 H 0.086 0.914 45 H 0.195 0.805 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.892 10.408 -21.640 24.725 hybrid contribution 0.048 -0.709 -0.553 0.901 sum 5.940 9.698 -22.194 24.938 Atomic orbital electron populations 1.22447 0.98838 1.00839 1.00551 1.20162 0.92259 0.95623 0.85124 0.92976 1.22246 1.01847 0.99583 0.93953 1.21112 0.98553 0.81686 0.94850 0.88365 1.22187 1.01757 1.00331 0.97741 1.45971 1.25434 1.10372 1.54815 1.16859 0.85062 0.81779 0.78325 1.90813 1.18756 1.83461 1.48006 1.24427 1.02284 1.00356 1.11504 1.20344 0.99818 0.89986 0.97732 1.20103 0.95186 0.98666 1.03772 1.24608 1.01587 1.01188 1.04658 1.83057 1.15168 1.05009 1.46592 1.21071 0.95218 0.94191 1.01895 1.22628 0.83689 0.97163 0.97786 1.87994 1.17343 1.41784 1.82283 1.21532 0.94681 0.83707 0.95151 1.42863 1.79463 1.10863 1.06242 1.19055 1.33040 0.98994 0.85974 0.89387 1.24703 1.01161 0.97869 0.95501 1.69714 1.50722 1.38258 0.99460 0.86503 0.79522 0.85528 0.76617 1.21238 1.21865 1.20488 0.92516 0.93962 0.93551 0.90402 0.91223 0.92473 0.91377 0.92416 0.76660 0.82967 0.89095 0.88795 0.87853 0.92461 0.87300 0.91430 0.80537 0.93105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 9.24 37.16 0.34 -2.71 16 2 C 0.18 3.33 2.91 -67.93 -0.20 3.13 16 3 H 0.05 1.03 7.57 -51.92 -0.39 0.64 16 4 C -0.14 -1.99 4.40 -26.73 -0.12 -2.11 16 5 C 0.14 1.87 2.52 -67.94 -0.17 1.70 16 6 H 0.10 1.44 5.67 -51.92 -0.29 1.15 16 7 C -0.16 -1.78 9.50 37.16 0.35 -1.43 16 8 N -0.71 -9.40 4.42 -55.15 -0.24 -9.64 16 9 C 0.59 8.59 7.76 -12.90 -0.10 8.49 16 10 O -0.53 -9.17 16.44 5.19 0.09 -9.08 16 11 C -0.27 -3.33 6.43 -36.93 -0.24 -3.57 16 12 C -0.05 -0.53 9.84 -40.39 -0.40 -0.92 16 13 C -0.16 -1.67 5.84 -104.86 -0.61 -2.28 16 14 C -0.20 -2.00 6.23 -34.76 -0.22 -2.21 16 15 S 0.23 2.42 22.12 -107.50 -2.38 0.04 16 16 C -0.08 -0.63 6.52 -27.19 -0.18 -0.80 16 17 C 0.07 0.44 6.82 37.34 0.25 0.69 16 18 O -0.38 -3.50 10.72 -35.23 -0.38 -3.88 16 19 C 0.13 1.05 7.12 36.82 0.26 1.31 16 20 N -0.75 -17.36 4.93 -53.42 -0.26 -17.62 16 21 C -0.24 -6.71 10.39 -15.06 -0.16 -6.87 16 22 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 23 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 24 N -0.93 -29.20 13.97 55.49 0.78 -28.42 16 25 Si 0.89 21.88 27.97 -169.99 -4.76 17.13 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H -0.28 -6.39 6.20 56.52 0.35 -6.04 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.04 0.70 6.49 -51.93 -0.34 0.36 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.40 4.80 7.75 -40.82 -0.32 4.49 16 38 H 0.15 1.62 8.05 -52.48 -0.42 1.20 16 39 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 43 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.36 8.19 5.53 -40.82 -0.23 7.96 16 46 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 385.21 15.07 5.80 5.80 Total: -1.00 -34.03 385.21 -9.71 -43.74 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -7.09 Total: 9.50 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -1.27 Total: -7.57 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: 0.27 Total: -55.68 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -0.29 Total: -12.96 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.76 Total: 17.13 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -2.38 Total: 0.04 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.03 -9.71 -43.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135952319.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.011 kcal (2) G-P(sol) polarization free energy of solvation -34.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds