Wall clock time and date at job start Tue Mar 31 2020 20:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09007 * 109.46665 * 2 1 4 4 C 1.53003 * 109.47186 * 240.00649 * 2 1 3 5 5 C 1.52998 * 109.47358 * 65.86772 * 4 2 1 6 6 H 1.09011 * 109.47161 * 305.27171 * 5 4 2 7 7 C 1.52998 * 109.47139 * 185.27615 * 5 4 2 8 8 N 1.46493 * 109.47066 * 65.27119 * 5 4 2 9 9 C 1.34782 * 119.99971 * 206.95199 * 8 5 4 10 10 O 1.21700 * 120.00022 * 5.34655 * 9 8 5 11 11 C 1.46578 * 120.00075 * 185.33586 * 9 8 5 12 12 C 1.36267 * 125.44419 * 174.84340 * 11 9 8 13 13 C 1.37975 * 114.03099 * 180.02562 * 12 11 9 14 14 C 1.35544 * 113.91571 * 359.97317 * 13 12 11 15 15 S 1.70355 * 111.19656 * 0.04609 * 14 13 12 16 16 C 1.51729 * 123.16997 * 179.97438 * 14 13 12 17 17 C 1.53362 * 107.99717 * 344.33474 * 16 14 13 18 18 O 1.43031 * 109.11811 * 47.86677 * 17 16 14 19 19 C 1.43007 * 114.15242 * 288.42940 * 18 17 16 20 20 N 1.46489 * 109.47451 * 120.00034 * 2 1 3 21 21 C 1.36935 * 120.00238 * 277.45993 * 20 2 1 22 22 H 1.08005 * 120.00010 * 4.91831 * 21 20 2 23 23 C 1.38815 * 120.00190 * 184.92313 * 21 20 2 24 24 N 1.31619 * 120.00047 * 184.33746 * 23 21 20 25 25 Si 1.86799 * 119.99838 * 4.33906 * 23 21 20 26 26 H 1.48500 * 109.47346 * 93.40972 * 25 23 21 27 27 H 1.48502 * 109.47013 * 213.40909 * 25 23 21 28 28 H 1.48495 * 109.47248 * 333.40528 * 25 23 21 29 29 H 1.08998 * 109.46805 * 299.99590 * 1 2 3 30 30 H 1.09000 * 109.47524 * 60.00214 * 1 2 3 31 31 H 1.08998 * 109.46609 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46559 * 305.86858 * 4 2 1 33 33 H 1.08999 * 109.47030 * 185.86835 * 4 2 1 34 34 H 1.09001 * 109.46578 * 299.99701 * 7 5 4 35 35 H 1.08996 * 109.47450 * 59.99717 * 7 5 4 36 36 H 1.09006 * 109.47244 * 180.02562 * 7 5 4 37 37 H 0.97002 * 120.00510 * 26.95564 * 8 5 4 38 38 H 1.08006 * 122.98095 * 0.02562 * 12 11 9 39 39 H 1.09002 * 109.76561 * 224.69496 * 16 14 13 40 40 H 1.08996 * 109.76636 * 103.97259 * 16 14 13 41 41 H 1.08993 * 109.53320 * 167.76076 * 17 16 14 42 42 H 1.09000 * 109.52597 * 287.97939 * 17 16 14 43 43 H 1.08998 * 109.68913 * 171.73919 * 19 18 17 44 44 H 1.09002 * 109.68539 * 292.27878 * 19 18 17 45 45 H 0.97004 * 120.00091 * 97.45184 * 20 2 1 46 46 H 0.97002 * 120.00093 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 1.6541 0.0803 -2.4942 6 1 0.5777 0.2526 -2.4961 7 6 2.0473 -0.7038 -3.7477 8 7 2.3545 1.3669 -2.4831 9 6 1.8192 2.4310 -3.1138 10 8 0.7103 2.3506 -3.6089 11 6 2.5725 3.6852 -3.2034 12 6 2.1841 4.7926 -3.8960 13 6 3.0748 5.8436 -3.8205 14 6 4.1726 5.5807 -3.0703 15 16 4.1209 4.0007 -2.4355 16 6 5.2860 6.5871 -2.8470 17 6 5.1345 7.7006 -3.8907 18 8 3.7715 8.1332 -3.9197 19 6 2.8704 7.1894 -4.5048 20 7 2.0184 -0.6905 1.1960 21 6 2.1016 -0.0207 2.3875 22 1 1.7333 0.9917 2.4647 23 6 2.6592 -0.6428 3.4961 24 7 2.6620 -0.0316 4.6617 25 14 3.4059 -2.3473 3.3335 26 1 4.8621 -2.2267 3.0688 27 1 3.1928 -3.1033 4.5938 28 1 2.7563 -3.0670 2.2087 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.5934 -1.7140 -1.3035 33 1 3.1250 -0.8130 -1.1983 34 1 3.1236 -0.8760 -3.7457 35 1 1.5262 -1.6611 -3.7559 36 1 1.7727 -0.1326 -4.6346 37 1 3.2035 1.4531 -2.0220 38 1 1.2609 4.8431 -4.4544 39 1 6.2533 6.0991 -2.9664 40 1 5.2068 7.0081 -1.8448 41 1 5.7775 8.5394 -3.6245 42 1 5.4172 7.3206 -4.8724 43 1 1.8431 7.5233 -4.3589 44 1 3.0782 7.0954 -5.5707 45 1 2.2829 -1.6224 1.1441 46 1 3.0513 -0.4664 5.4365 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135952319.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:47 Heat of formation + Delta-G solvation = -69.666907 kcal Electronic energy + Delta-G solvation = -26813.489824 eV Core-core repulsion = 23021.737836 eV Total energy + Delta-G solvation = -3791.751987 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.15430 -40.53204 -38.56619 -37.39199 -36.28872 -34.14803 -33.52029 -32.54466 -30.94566 -30.40733 -27.69556 -26.87778 -26.16285 -25.44378 -23.66769 -22.44176 -21.82213 -21.31956 -20.00273 -19.49659 -19.06489 -17.81028 -17.31269 -17.07181 -16.70984 -16.38279 -16.12395 -16.03650 -15.93368 -15.41828 -15.22897 -14.77446 -14.66703 -14.44454 -14.23516 -13.99016 -13.96963 -13.72562 -13.53220 -13.40185 -13.02695 -12.92391 -12.82916 -12.75507 -12.45782 -12.25673 -12.16552 -12.08648 -11.83601 -11.72919 -11.63174 -11.55662 -11.21990 -10.97167 -10.72621 -10.22332 -9.71573 -9.44056 -9.31041 -8.00809 -5.34674 -0.60902 0.35230 0.79881 1.16065 1.38897 1.43838 1.51084 2.05822 2.08076 2.50303 2.88745 3.29734 3.40046 3.52888 3.62028 3.84093 3.94791 3.95359 4.11376 4.17938 4.23091 4.27722 4.41561 4.43826 4.53642 4.58530 4.60615 4.65305 4.72052 4.76406 4.81416 4.88433 4.91473 4.92327 5.02307 5.05281 5.12567 5.28728 5.29121 5.34721 5.40591 5.55339 5.79243 6.12599 6.23233 6.36803 7.03836 7.10407 7.85787 8.07413 9.20992 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012944 B = 0.002866 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.610815 B = 9768.255270 C =11075.153894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.172 3.828 3 H 0.036 0.964 4 C -0.124 4.124 5 C 0.145 3.855 6 H 0.082 0.918 7 C -0.153 4.153 8 N -0.711 5.711 9 C 0.592 3.408 10 O -0.568 6.568 11 C -0.297 4.297 12 C -0.044 4.044 13 C -0.174 4.174 14 C -0.199 4.199 15 S 0.241 5.759 16 C -0.087 4.087 17 C 0.062 3.938 18 O -0.395 6.395 19 C 0.127 3.873 20 N -0.750 5.750 21 C -0.228 4.228 22 H 0.047 0.953 23 C -0.067 4.067 24 N -0.986 5.986 25 Si 0.962 3.038 26 H -0.278 1.278 27 H -0.300 1.300 28 H -0.247 1.247 29 H 0.024 0.976 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.048 0.952 37 H 0.404 0.596 38 H 0.154 0.846 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.125 0.875 42 H 0.069 0.931 43 H 0.116 0.884 44 H 0.086 0.914 45 H 0.368 0.632 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.363 9.983 -24.623 27.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.064 3.936 3 H 0.054 0.946 4 C -0.162 4.162 5 C 0.040 3.960 6 H 0.100 0.900 7 C -0.212 4.212 8 N -0.362 5.362 9 C 0.379 3.621 10 O -0.450 6.450 11 C -0.417 4.417 12 C -0.078 4.078 13 C -0.187 4.187 14 C -0.320 4.320 15 S 0.513 5.487 16 C -0.126 4.126 17 C -0.016 4.016 18 O -0.313 6.313 19 C 0.049 3.951 20 N -0.394 5.394 21 C -0.359 4.359 22 H 0.066 0.934 23 C -0.258 4.258 24 N -0.637 5.637 25 Si 0.789 3.211 26 H -0.204 1.204 27 H -0.228 1.228 28 H -0.171 1.171 29 H 0.043 0.957 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.114 0.886 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.240 0.760 38 H 0.171 0.829 39 H 0.130 0.870 40 H 0.112 0.888 41 H 0.143 0.857 42 H 0.087 0.913 43 H 0.133 0.867 44 H 0.104 0.896 45 H 0.202 0.798 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.503 9.334 -23.815 26.657 hybrid contribution -0.479 -0.216 0.101 0.535 sum 7.024 9.118 -23.714 26.359 Atomic orbital electron populations 1.22332 0.98419 1.01324 0.99770 1.20343 0.92403 0.95218 0.85614 0.94601 1.22112 1.02486 0.99886 0.91757 1.21086 0.97706 0.81738 0.95436 0.89986 1.22111 1.02824 1.00449 0.95780 1.45982 1.25496 1.10314 1.54417 1.17114 0.84730 0.82463 0.77758 1.90779 1.20284 1.84191 1.49731 1.24350 1.03732 1.00140 1.13493 1.20520 1.00028 0.90094 0.97121 1.20329 0.94945 0.99260 1.04174 1.25059 1.02175 1.01172 1.03557 1.82929 1.13826 1.05664 1.46316 1.21251 0.95229 0.93907 1.02204 1.22848 0.82857 0.97725 0.98174 1.87972 1.18567 1.42281 1.82529 1.21663 0.95115 0.82447 0.95858 1.42809 1.79564 1.11121 1.05922 1.18950 1.31472 0.97589 0.87914 0.93447 1.25573 1.02383 1.02889 0.94941 1.69913 1.52559 1.40684 1.00522 0.85305 0.78794 0.79836 0.77138 1.20436 1.22753 1.17110 0.95710 0.92336 0.92364 0.88555 0.90085 0.91117 0.89689 0.93261 0.76033 0.82868 0.86953 0.88809 0.85739 0.91292 0.86659 0.89580 0.79752 0.93424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.75 9.24 71.98 0.67 -5.09 16 2 C 0.17 6.32 2.91 45.00 0.13 6.45 16 3 H 0.04 1.44 7.57 -2.38 -0.02 1.42 16 4 C -0.12 -3.27 4.40 30.59 0.13 -3.14 16 5 C 0.14 3.57 2.52 44.99 0.11 3.68 16 6 H 0.08 2.33 5.67 -2.38 -0.01 2.32 16 7 C -0.15 -2.99 9.50 71.98 0.68 -2.31 16 8 N -0.71 -18.32 4.42 -446.60 -1.97 -20.29 16 9 C 0.59 17.32 7.76 86.42 0.67 17.99 16 10 O -0.57 -20.02 16.44 -4.35 -0.07 -20.09 16 11 C -0.30 -7.51 6.43 23.99 0.15 -7.36 16 12 C -0.04 -1.01 9.84 21.75 0.21 -0.79 16 13 C -0.17 -3.41 5.84 -20.02 -0.12 -3.52 16 14 C -0.20 -3.73 6.23 25.39 0.16 -3.58 16 15 S 0.24 4.93 22.12 -56.49 -1.25 3.68 16 16 C -0.09 -1.11 6.52 30.30 0.20 -0.91 16 17 C 0.06 0.68 6.82 72.10 0.49 1.17 16 18 O -0.39 -6.68 10.72 -148.98 -1.60 -8.27 16 19 C 0.13 1.92 7.12 71.77 0.51 2.44 16 20 N -0.75 -33.87 4.93 -322.93 -1.59 -35.46 16 21 C -0.23 -12.94 10.39 84.03 0.87 -12.07 16 22 H 0.05 3.02 8.06 -2.91 -0.02 2.99 16 23 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 24 N -0.99 -63.36 13.97 21.65 0.30 -63.05 16 25 Si 0.96 44.63 27.97 68.60 1.92 46.54 16 26 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 27 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 28 H -0.25 -10.02 6.20 99.48 0.62 -9.40 16 29 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.92 6.49 -2.39 -0.02 1.90 16 31 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 33 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.40 9.46 7.75 -92.71 -0.72 8.74 16 38 H 0.15 3.34 8.05 -2.91 -0.02 3.32 16 39 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.07 0.61 8.08 -2.39 -0.02 0.59 16 43 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.37 15.62 5.53 -92.71 -0.51 15.11 16 46 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -75.53 385.21 0.77 -74.76 By element: Atomic # 1 Polarization: 32.98 SS G_CDS: -0.32 Total: 32.66 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 5.35 Total: -10.47 kcal Atomic # 7 Polarization: -115.54 SS G_CDS: -3.26 Total: -118.81 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -1.67 Total: -28.36 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.92 Total: 46.54 kcal Atomic # 16 Polarization: 4.93 SS G_CDS: -1.25 Total: 3.68 kcal Total: -75.53 0.77 -74.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135952319.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.092 kcal (2) G-P(sol) polarization free energy of solvation -75.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds