Wall clock time and date at job start Tue Mar 31 2020 20:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47022 * 2 1 4 4 C 1.52998 * 109.47443 * 120.00087 * 2 1 3 5 5 C 1.52998 * 109.47384 * 185.00170 * 4 2 1 6 6 H 1.09004 * 109.46526 * 304.99490 * 5 4 2 7 7 C 1.52999 * 109.47036 * 184.99951 * 5 4 2 8 8 N 1.46496 * 109.47164 * 64.99625 * 5 4 2 9 9 C 1.34779 * 119.99550 * 205.00192 * 8 5 4 10 10 O 1.21701 * 120.00433 * 0.02562 * 9 8 5 11 11 C 1.46587 * 119.99551 * 180.02562 * 9 8 5 12 12 C 1.36265 * 125.44059 * 179.97438 * 11 9 8 13 13 C 1.37979 * 114.03179 * 179.97438 * 12 11 9 14 14 C 1.35481 * 113.93272 * 0.02562 * 13 12 11 15 15 S 1.70437 * 111.19255 * 359.73859 * 14 13 12 16 16 C 1.51723 * 123.22549 * 179.97438 * 14 13 12 17 17 C 1.53361 * 107.94836 * 344.21918 * 16 14 13 18 18 O 1.43037 * 109.10901 * 47.92329 * 17 16 14 19 19 C 1.43019 * 114.14262 * 288.40590 * 18 17 16 20 20 N 1.46498 * 109.47120 * 240.00144 * 2 1 3 21 21 C 1.36935 * 120.00239 * 84.99640 * 20 2 1 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 2 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 2 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.09003 * 109.46933 * 300.00179 * 1 2 3 30 30 H 1.09004 * 109.47411 * 59.99789 * 1 2 3 31 31 H 1.08996 * 109.47329 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46795 * 304.99831 * 4 2 1 33 33 H 1.08999 * 109.47341 * 64.99651 * 4 2 1 34 34 H 1.09003 * 109.47191 * 179.97438 * 7 5 4 35 35 H 1.08996 * 109.47126 * 299.99873 * 7 5 4 36 36 H 1.09004 * 109.47346 * 59.99769 * 7 5 4 37 37 H 0.96994 * 120.00193 * 25.00319 * 8 5 4 38 38 H 1.08003 * 122.98067 * 359.97438 * 12 11 9 39 39 H 1.08998 * 109.76415 * 103.82663 * 16 14 13 40 40 H 1.09000 * 109.76701 * 224.54837 * 16 14 13 41 41 H 1.08996 * 109.53240 * 167.81928 * 17 16 14 42 42 H 1.09007 * 109.52682 * 288.03918 * 17 16 14 43 43 H 1.09002 * 109.73995 * 292.31225 * 19 18 17 44 44 H 1.08992 * 109.64968 * 171.72846 * 19 18 17 45 45 H 0.97004 * 119.99747 * 265.00379 * 20 2 1 46 46 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3136 6 1 3.9953 -0.9923 0.3867 7 6 4.0851 -1.4383 2.4924 8 7 3.9479 0.7894 1.4923 9 6 5.1612 1.2135 1.0865 10 8 5.9383 0.4314 0.5712 11 6 5.5447 2.6169 1.2658 12 6 6.7379 3.1631 0.8986 13 6 6.8490 4.5098 1.1776 14 6 5.7508 5.0415 1.7663 15 16 4.5368 3.8649 1.9824 16 6 5.6456 6.5019 2.1641 17 6 7.0591 7.0967 2.1569 18 8 7.7152 6.7302 0.9399 19 6 8.0811 5.3496 0.8654 20 7 2.0183 -0.6906 -1.1962 21 6 2.1490 -0.0075 -2.3758 22 1 1.8925 1.0405 -2.4242 23 6 2.6112 -0.6619 -3.5093 24 7 2.9290 -1.9378 -3.4489 25 14 2.7902 0.2701 -5.1183 26 1 1.5246 0.1742 -5.8892 27 1 3.0895 1.6964 -4.8334 28 1 3.8987 -0.3195 -5.9112 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6054 -0.2617 2.1369 33 1 1.7517 -1.7715 1.2056 34 1 5.1715 -1.3617 2.5381 35 1 3.6546 -1.0593 3.4193 36 1 3.8001 -2.4819 2.3594 37 1 3.3285 1.4129 1.9027 38 1 7.5265 2.5924 0.4307 39 1 5.0181 7.0343 1.4493 40 1 5.2161 6.5820 3.1627 41 1 6.9979 8.1828 2.2252 42 1 7.6222 6.7083 3.0057 43 1 8.8645 5.1366 1.5927 44 1 8.4382 5.1187 -0.1381 45 1 2.2489 -1.6318 -1.1526 46 1 2.8364 -2.4217 -2.6134 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135952320.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:50 Heat of formation + Delta-G solvation = -49.642874 kcal Electronic energy + Delta-G solvation = -27281.172491 eV Core-core repulsion = 23490.288811 eV Total energy + Delta-G solvation = -3790.883680 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.07707 -39.48248 -37.15587 -36.37330 -34.61052 -32.81410 -32.34775 -31.06662 -29.60398 -28.29383 -26.41429 -26.11843 -25.12812 -23.41021 -22.80875 -21.25062 -20.52795 -19.91455 -18.87347 -18.11243 -17.33409 -17.00320 -16.28254 -15.98217 -15.51923 -15.23693 -14.94064 -14.78861 -14.29609 -14.04884 -13.94695 -13.54673 -13.45299 -13.21864 -13.12115 -13.04055 -12.89682 -12.20885 -12.13224 -12.09641 -11.73119 -11.71076 -11.64540 -11.37274 -11.07697 -11.02320 -10.71508 -10.48130 -10.44068 -10.09948 -10.04539 -9.94585 -9.80947 -9.10135 -8.90637 -8.84463 -8.73401 -8.54097 -6.95670 -6.01622 -3.00996 0.38587 1.27458 1.70417 2.15623 3.25154 3.41432 3.50062 3.56083 3.61931 3.75594 4.24176 4.43509 4.60055 4.73832 4.78608 4.87540 4.98617 5.06481 5.08925 5.25394 5.26502 5.32402 5.38504 5.40900 5.53723 5.59414 5.67597 5.74898 5.80234 5.86071 5.91925 5.99271 6.04357 6.17299 6.20755 6.28312 6.36279 6.47022 6.58845 6.71552 6.75827 6.84445 7.00876 7.65524 7.88165 8.39231 8.83902 9.30668 10.16763 10.31219 11.46983 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010807 B = 0.003478 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.216161 B = 8048.603905 C = 9203.256995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.177 3.823 3 H 0.046 0.954 4 C -0.133 4.133 5 C 0.145 3.855 6 H 0.104 0.896 7 C -0.161 4.161 8 N -0.711 5.711 9 C 0.591 3.409 10 O -0.520 6.520 11 C -0.252 4.252 12 C -0.049 4.049 13 C -0.158 4.158 14 C -0.203 4.203 15 S 0.211 5.789 16 C -0.082 4.082 17 C 0.065 3.935 18 O -0.376 6.376 19 C 0.127 3.873 20 N -0.731 5.731 21 C -0.325 4.325 22 H 0.061 0.939 23 C -0.043 4.043 24 N -0.944 5.944 25 Si 1.079 2.921 26 H -0.296 1.296 27 H -0.296 1.296 28 H -0.288 1.288 29 H 0.035 0.965 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.391 0.609 38 H 0.154 0.846 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.057 0.943 43 H 0.069 0.931 44 H 0.110 0.890 45 H 0.366 0.634 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.032 15.689 18.465 24.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.067 3.933 3 H 0.064 0.936 4 C -0.172 4.172 5 C 0.042 3.958 6 H 0.122 0.878 7 C -0.220 4.220 8 N -0.362 5.362 9 C 0.376 3.624 10 O -0.397 6.397 11 C -0.372 4.372 12 C -0.081 4.081 13 C -0.172 4.172 14 C -0.323 4.323 15 S 0.482 5.518 16 C -0.121 4.121 17 C -0.013 4.013 18 O -0.294 6.294 19 C 0.049 3.951 20 N -0.374 5.374 21 C -0.457 4.457 22 H 0.079 0.921 23 C -0.241 4.241 24 N -0.590 5.590 25 Si 0.910 3.090 26 H -0.224 1.224 27 H -0.223 1.223 28 H -0.214 1.214 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.224 0.776 38 H 0.172 0.828 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.120 0.880 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.128 0.872 45 H 0.199 0.801 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.529 15.326 16.927 23.279 hybrid contribution 0.431 -0.040 1.366 1.433 sum 4.960 15.286 18.293 24.349 Atomic orbital electron populations 1.22439 0.99385 1.00748 0.99910 1.20154 0.91612 0.95505 0.86069 0.93600 1.22206 0.93653 1.02279 0.99049 1.21051 0.95174 0.79663 0.99945 0.87766 1.22193 1.01670 1.00162 0.97955 1.45821 1.15875 1.11888 1.62604 1.16825 0.82280 0.85148 0.78160 1.90855 1.51228 1.54825 1.42817 1.24481 1.00292 0.98284 1.14152 1.20396 0.96944 0.93182 0.97618 1.20089 0.98216 0.94547 1.04352 1.24502 0.99071 1.01382 1.07334 1.82735 1.15971 0.96895 1.56248 1.21041 0.99703 0.88851 1.02547 1.22620 0.91005 1.00316 0.87356 1.87999 1.77632 1.25081 1.38671 1.21554 0.91492 0.79208 1.02878 1.42399 1.79140 1.09656 1.06242 1.19981 1.41728 0.94877 0.89070 0.92089 1.25662 0.99416 0.97529 1.01501 1.70842 1.51276 1.08437 1.28419 0.83249 0.76374 0.73914 0.75443 1.22440 1.22298 1.21394 0.94596 0.92792 0.93625 0.91858 0.90535 0.92363 0.92981 0.91575 0.77568 0.82830 0.89011 0.89268 0.87952 0.92476 0.91354 0.87166 0.80114 0.93401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.49 37.16 0.35 -2.58 16 2 C 0.18 3.43 2.84 -67.93 -0.19 3.24 16 3 H 0.05 0.93 7.56 -51.93 -0.39 0.54 16 4 C -0.13 -2.05 4.29 -26.73 -0.11 -2.17 16 5 C 0.15 2.41 2.52 -67.93 -0.17 2.24 16 6 H 0.10 2.24 7.05 -51.93 -0.37 1.87 16 7 C -0.16 -2.23 9.48 37.16 0.35 -1.88 16 8 N -0.71 -11.13 4.44 -55.14 -0.25 -11.38 16 9 C 0.59 10.53 7.75 -12.89 -0.10 10.43 16 10 O -0.52 -11.38 16.49 5.19 0.09 -11.30 16 11 C -0.25 -3.73 6.44 -36.93 -0.24 -3.97 16 12 C -0.05 -0.68 9.84 -40.39 -0.40 -1.07 16 13 C -0.16 -1.86 5.84 -104.89 -0.61 -2.47 16 14 C -0.20 -2.20 6.23 -34.79 -0.22 -2.42 16 15 S 0.21 2.35 22.10 -107.50 -2.38 -0.02 16 16 C -0.08 -0.64 6.52 -27.19 -0.18 -0.82 16 17 C 0.07 0.48 6.82 37.34 0.25 0.73 16 18 O -0.38 -3.84 10.72 -35.23 -0.38 -4.22 16 19 C 0.13 1.22 7.12 36.82 0.26 1.48 16 20 N -0.73 -18.18 4.49 -53.43 -0.24 -18.42 16 21 C -0.33 -9.30 9.93 -15.06 -0.15 -9.45 16 22 H 0.06 1.75 7.83 -52.48 -0.41 1.33 16 23 C -0.04 -1.30 5.50 -17.43 -0.10 -1.39 16 24 N -0.94 -29.95 13.70 55.49 0.76 -29.19 16 25 Si 1.08 27.18 29.92 -169.99 -5.09 22.09 16 26 H -0.30 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.30 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.39 5.08 7.71 -40.82 -0.31 4.76 16 38 H 0.15 2.09 8.05 -52.48 -0.42 1.66 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.36 8.08 -51.92 -0.42 -0.06 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.37 9.46 6.63 -40.82 -0.27 9.19 16 46 H 0.25 7.93 6.77 -40.82 -0.28 7.66 16 LS Contribution 389.32 15.07 5.87 5.87 Total: -1.00 -35.75 389.32 -10.02 -45.77 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -7.17 Total: 10.91 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -1.24 Total: -10.10 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: 0.28 Total: -58.99 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.29 Total: -15.52 kcal Atomic # 14 Polarization: 27.18 SS G_CDS: -5.09 Total: 22.09 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -2.38 Total: -0.02 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.75 -10.02 -45.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135952320.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.876 kcal (2) G-P(sol) polarization free energy of solvation -35.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds