Wall clock time and date at job start Tue Mar 31 2020 20:31:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08995 * 109.47038 * 2 1
4 4 C 1.53001 * 109.46947 * 240.00138 * 2 1 3
5 5 C 1.52997 * 109.47049 * 175.00112 * 4 2 1
6 6 H 1.09001 * 109.47289 * 305.00191 * 5 4 2
7 7 C 1.53006 * 109.47127 * 185.00237 * 5 4 2
8 8 N 1.46500 * 109.47473 * 64.99864 * 5 4 2
9 9 C 1.36932 * 120.00140 * 205.00132 * 8 5 4
10 10 H 1.07994 * 120.00447 * 359.97438 * 9 8 5
11 11 C 1.38813 * 119.99838 * 180.02562 * 9 8 5
12 12 N 1.31623 * 120.00145 * 359.97438 * 11 9 8
13 13 Si 1.86806 * 119.99922 * 179.97438 * 11 9 8
14 14 H 1.48497 * 109.47005 * 89.99771 * 13 11 9
15 15 H 1.48503 * 109.46914 * 209.99621 * 13 11 9
16 16 H 1.48498 * 109.47180 * 329.99943 * 13 11 9
17 17 N 1.46503 * 109.47413 * 120.00380 * 2 1 3
18 18 C 1.34776 * 119.99872 * 275.00321 * 17 2 1
19 19 O 1.21700 * 119.99852 * 359.97438 * 18 17 2
20 20 C 1.46585 * 120.00142 * 179.97438 * 18 17 2
21 21 C 1.36260 * 125.44156 * 179.97438 * 20 18 17
22 22 C 1.37970 * 114.02893 * 180.02562 * 21 20 18
23 23 C 1.35482 * 113.93935 * 359.97438 * 22 21 20
24 24 S 1.70433 * 111.18580 * 359.71983 * 23 22 21
25 25 C 1.51718 * 123.22851 * 179.97438 * 23 22 21
26 26 C 1.53360 * 107.94821 * 344.21272 * 25 23 22
27 27 O 1.43035 * 109.10737 * 47.93339 * 26 25 23
28 28 C 1.43011 * 114.15280 * 288.41569 * 27 26 25
29 29 H 1.09004 * 109.47081 * 180.02562 * 1 2 3
30 30 H 1.09000 * 109.47226 * 299.99876 * 1 2 3
31 31 H 1.09000 * 109.47551 * 60.00098 * 1 2 3
32 32 H 1.08998 * 109.47250 * 54.99993 * 4 2 1
33 33 H 1.08998 * 109.47252 * 294.99917 * 4 2 1
34 34 H 1.09001 * 109.47002 * 299.99574 * 7 5 4
35 35 H 1.08993 * 109.46955 * 60.00011 * 7 5 4
36 36 H 1.09000 * 109.47050 * 179.97438 * 7 5 4
37 37 H 0.97005 * 119.99374 * 25.00210 * 8 5 4
38 38 H 0.97001 * 119.99679 * 180.02562 * 12 11 9
39 39 H 0.97002 * 120.00011 * 94.99370 * 17 2 1
40 40 H 1.08006 * 122.98557 * 0.04522 * 21 20 18
41 41 H 1.08998 * 109.76675 * 103.83095 * 25 23 22
42 42 H 1.09003 * 109.76691 * 224.55042 * 25 23 22
43 43 H 1.09001 * 109.52780 * 167.81965 * 26 25 23
44 44 H 1.08992 * 109.53171 * 288.04130 * 26 25 23
45 45 H 1.09002 * 109.69990 * 292.29461 * 28 27 26
46 46 H 1.08995 * 109.67637 * 171.71938 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0399 -0.7212 -1.2493
5 6 3.5647 -0.6133 -1.3137
6 1 3.8570 0.4358 -1.2678
7 6 4.0644 -1.2250 -2.6242
8 7 4.1536 -1.3342 -0.1825
9 6 5.3943 -0.9856 0.2805
10 1 5.9388 -0.1795 -0.1885
11 6 5.9524 -1.6691 1.3520
12 7 5.2890 -2.6519 1.9234
13 14 7.6452 -1.1940 1.9832
14 1 7.5074 -0.1569 3.0371
15 1 8.3155 -2.3911 2.5515
16 1 8.4583 -0.6563 0.8630
17 7 2.0184 -0.6907 1.1961
18 6 2.1471 -0.0184 2.3571
19 8 1.8580 1.1625 2.4117
20 6 2.6352 -0.7096 3.5541
21 6 2.8077 -0.1404 4.7800
22 6 3.2809 -1.0095 5.7414
23 6 3.4866 -2.2701 5.2895
24 16 3.0836 -2.4062 3.6391
25 6 4.0041 -3.3939 6.1676
26 6 4.5968 -2.7681 7.4360
27 8 3.6713 -1.8137 7.9637
28 6 3.5574 -0.6180 7.1875
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3634 0.5138 0.8900
31 1 -0.3634 0.5138 -0.8900
32 1 1.6053 -0.2617 -2.1370
33 1 1.7516 -1.7715 -1.2057
34 1 3.7722 -2.2741 -2.6701
35 1 3.6263 -0.6886 -3.4658
36 1 5.1507 -1.1477 -2.6703
37 1 3.6646 -2.0585 0.2385
38 1 5.6790 -3.1292 2.6724
39 1 2.2490 -1.6319 1.1525
40 1 2.5929 0.8988 4.9814
41 1 3.1841 -4.0608 6.4341
42 1 4.7750 -3.9519 5.6361
43 1 4.7785 -3.5473 8.1761
44 1 5.5350 -2.2696 7.1922
45 1 4.4881 -0.0534 7.2436
46 1 2.7356 -0.0109 7.5672
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001135952321.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:31:53
Heat of formation + Delta-G solvation = -43.079137 kcal
Electronic energy + Delta-G solvation = -28587.942381 eV
Core-core repulsion = 24797.343326 eV
Total energy + Delta-G solvation = -3790.599055 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 338.145 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-39.40586 -39.00256 -36.91903 -35.70149 -34.21714 -32.42324 -32.07347 -30.82033
-29.09970 -28.59442 -26.39284 -25.39675 -24.47822 -23.84560 -22.20899 -20.77758
-20.33715 -19.71462 -18.09788 -17.43125 -17.28865 -16.34207 -15.84368 -15.62312
-15.02765 -14.78791 -14.41850 -14.37919 -14.03355 -13.88998 -13.61422 -13.22300
-13.04317 -12.84365 -12.64675 -12.42429 -12.24544 -12.18752 -11.93442 -11.81567
-11.71524 -11.37648 -11.16215 -10.95522 -10.90928 -10.82809 -10.66321 -10.42962
-10.36254 -10.16317 -10.00843 -9.81017 -9.40960 -9.27846 -9.12815 -8.43244
-7.83605 -7.66658 -6.92040 -5.96888 -3.16449 1.25985 2.34136 2.73675
2.93199 3.34308 3.38931 3.42410 3.78609 3.99954 4.09021 4.45843
4.98321 5.04160 5.14319 5.26670 5.34174 5.39425 5.44154 5.46187
5.61348 5.63946 5.66359 5.72514 5.80416 5.82648 5.87897 5.94122
5.96522 6.01363 6.08473 6.16986 6.22724 6.31946 6.36373 6.47895
6.54281 6.61288 6.76251 6.85455 6.96537 7.04453 7.15636 7.32018
7.51422 8.16254 8.21914 8.93068 9.30494 9.83369 10.18753 11.19570
Molecular weight = 338.15amu
Principal moments of inertia in cm(-1)
A = 0.011473 B = 0.005244 C = 0.004064
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2439.944753 B = 5338.492548 C = 6888.156161
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.151 3.849
3 H 0.084 0.916
4 C -0.134 4.134
5 C 0.166 3.834
6 H 0.050 0.950
7 C -0.163 4.163
8 N -0.715 5.715
9 C -0.200 4.200
10 H 0.071 0.929
11 C -0.021 4.021
12 N -0.908 5.908
13 Si 0.902 3.098
14 H -0.290 1.290
15 H -0.291 1.291
16 H -0.283 1.283
17 N -0.699 5.699
18 C 0.605 3.395
19 O -0.560 6.560
20 C -0.290 4.290
21 C -0.076 4.076
22 C -0.177 4.177
23 C -0.262 4.262
24 S 0.381 5.619
25 C -0.074 4.074
26 C 0.067 3.933
27 O -0.382 6.382
28 C 0.132 3.868
29 H 0.053 0.947
30 H 0.058 0.942
31 H 0.060 0.940
32 H 0.076 0.924
33 H 0.064 0.936
34 H 0.046 0.954
35 H 0.037 0.963
36 H 0.053 0.947
37 H 0.378 0.622
38 H 0.257 0.743
39 H 0.399 0.601
40 H 0.134 0.866
41 H 0.080 0.920
42 H 0.083 0.917
43 H 0.095 0.905
44 H 0.053 0.947
45 H 0.057 0.943
46 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.510 -2.137 2.356 7.246
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C 0.046 3.954
3 H 0.102 0.898
4 C -0.173 4.173
5 C 0.057 3.943
6 H 0.068 0.932
7 C -0.223 4.223
8 N -0.357 5.357
9 C -0.331 4.331
10 H 0.089 0.911
11 C -0.216 4.216
12 N -0.558 5.558
13 Si 0.734 3.266
14 H -0.218 1.218
15 H -0.217 1.217
16 H -0.209 1.209
17 N -0.351 5.351
18 C 0.392 3.608
19 O -0.441 6.441
20 C -0.413 4.413
21 C -0.111 4.111
22 C -0.191 4.191
23 C -0.385 4.385
24 S 0.657 5.343
25 C -0.113 4.113
26 C -0.011 4.011
27 O -0.301 6.301
28 C 0.053 3.947
29 H 0.072 0.928
30 H 0.077 0.923
31 H 0.079 0.921
32 H 0.094 0.906
33 H 0.083 0.917
34 H 0.065 0.935
35 H 0.056 0.944
36 H 0.072 0.928
37 H 0.213 0.787
38 H 0.067 0.933
39 H 0.236 0.764
40 H 0.151 0.849
41 H 0.098 0.902
42 H 0.102 0.898
43 H 0.113 0.887
44 H 0.071 0.929
45 H 0.075 0.925
46 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges -6.607 -2.511 1.379 7.202
hybrid contribution 1.430 0.881 1.187 2.056
sum -5.177 -1.630 2.566 6.004
Atomic orbital electron populations
1.22213 0.96191 1.01673 1.02041 1.20806 0.92617 0.97728 0.84278
0.89782 1.22221 0.97608 1.00693 0.96772 1.20345 0.89892 0.95964
0.88097 0.93170 1.22394 1.01534 1.00405 0.97923 1.42567 1.18596
1.39789 1.34708 1.19386 0.92580 1.11805 1.09356 0.91121 1.24515
0.98767 0.99271 0.99004 1.69303 1.36836 1.24282 1.25365 0.86223
0.84159 0.77401 0.78849 1.21763 1.21711 1.20905 1.45837 1.66576
1.13946 1.08762 1.16801 0.76328 0.85713 0.81913 1.90708 1.52717
1.15417 1.85306 1.24225 1.17643 1.01141 0.98301 1.19908 1.00490
1.00035 0.90617 1.19642 1.08606 0.93420 0.97455 1.24659 1.12986
0.99541 1.01343 1.83491 1.49713 1.03600 0.97526 1.20827 1.00767
0.94868 0.94832 1.22559 0.91715 0.91869 0.94993 1.87889 1.63712
1.28699 1.49793 1.21380 1.00825 0.86211 0.86234 0.92800 0.92279
0.92069 0.90582 0.91712 0.93512 0.94395 0.92826 0.78713 0.93254
0.76373 0.84856 0.90211 0.89808 0.88733 0.92880 0.92544 0.88304
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.22 9.48 37.16 0.35 -1.86 16
2 C 0.15 2.44 2.57 -67.93 -0.17 2.27 16
3 H 0.08 1.54 7.58 -51.93 -0.39 1.15 16
4 C -0.13 -1.95 4.43 -26.73 -0.12 -2.07 16
5 C 0.17 2.96 2.89 -67.93 -0.20 2.76 16
6 H 0.05 0.96 8.08 -51.93 -0.42 0.55 16
7 C -0.16 -2.64 9.49 37.16 0.35 -2.28 16
8 N -0.71 -15.29 3.84 -53.43 -0.21 -15.50 16
9 C -0.20 -4.94 9.93 -15.06 -0.15 -5.09 16
10 H 0.07 1.79 7.83 -52.49 -0.41 1.37 16
11 C -0.02 -0.53 5.50 -17.43 -0.10 -0.62 16
12 N -0.91 -22.12 10.21 55.49 0.57 -21.56 16
13 Si 0.90 21.26 29.55 -169.99 -5.02 16.24 16
14 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16
15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16
16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
17 N -0.70 -12.96 3.80 -55.14 -0.21 -13.17 16
18 C 0.60 12.87 7.75 -12.89 -0.10 12.77 16
19 O -0.56 -13.19 16.49 5.19 0.09 -13.11 16
20 C -0.29 -5.96 6.43 -36.93 -0.24 -6.20 16
21 C -0.08 -1.50 9.84 -40.39 -0.40 -1.90 16
22 C -0.18 -3.20 5.84 -104.89 -0.61 -3.81 16
23 C -0.26 -4.67 6.23 -34.79 -0.22 -4.89 16
24 S 0.38 7.11 19.25 -107.50 -2.07 5.04 16
25 C -0.07 -1.08 6.52 -27.19 -0.18 -1.25 16
26 C 0.07 0.90 6.82 37.34 0.25 1.16 16
27 O -0.38 -5.87 10.72 -35.23 -0.38 -6.25 16
28 C 0.13 2.01 7.12 36.82 0.26 2.28 16
29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16
31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16
33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16
35 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16
36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16
37 H 0.38 8.22 5.70 -40.82 -0.23 7.99 16
38 H 0.26 6.25 8.23 -40.82 -0.34 5.92 16
39 H 0.40 7.35 5.62 -40.82 -0.23 7.12 16
40 H 0.13 2.53 8.05 -52.48 -0.42 2.10 16
41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16
42 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16
43 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16
44 H 0.05 0.73 8.08 -51.93 -0.42 0.31 16
45 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
46 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16
LS Contribution 381.04 15.07 5.74 5.74
Total: -1.00 -28.22 381.04 -9.90 -38.12
By element:
Atomic # 1 Polarization: 20.36 SS G_CDS: -7.16 Total: 13.20 kcal
Atomic # 6 Polarization: -7.51 SS G_CDS: -1.25 Total: -8.76 kcal
Atomic # 7 Polarization: -50.38 SS G_CDS: 0.15 Total: -50.22 kcal
Atomic # 8 Polarization: -19.07 SS G_CDS: -0.29 Total: -19.36 kcal
Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal
Atomic # 16 Polarization: 7.11 SS G_CDS: -2.07 Total: 5.04 kcal
Total LS contribution 5.74 Total: 5.74 kcal
Total: -28.22 -9.90 -38.12 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001135952321.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -4.958 kcal
(2) G-P(sol) polarization free energy of solvation -28.220 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.178 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.121 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.079 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds