Wall clock time and date at job start Tue Mar 31 2020 20:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47038 * 2 1 4 4 C 1.53001 * 109.46947 * 240.00138 * 2 1 3 5 5 C 1.52997 * 109.47049 * 175.00112 * 4 2 1 6 6 H 1.09001 * 109.47289 * 305.00191 * 5 4 2 7 7 C 1.53006 * 109.47127 * 185.00237 * 5 4 2 8 8 N 1.46500 * 109.47473 * 64.99864 * 5 4 2 9 9 C 1.36932 * 120.00140 * 205.00132 * 8 5 4 10 10 H 1.07994 * 120.00447 * 359.97438 * 9 8 5 11 11 C 1.38813 * 119.99838 * 180.02562 * 9 8 5 12 12 N 1.31623 * 120.00145 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99922 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47005 * 89.99771 * 13 11 9 15 15 H 1.48503 * 109.46914 * 209.99621 * 13 11 9 16 16 H 1.48498 * 109.47180 * 329.99943 * 13 11 9 17 17 N 1.46503 * 109.47413 * 120.00380 * 2 1 3 18 18 C 1.34776 * 119.99872 * 275.00321 * 17 2 1 19 19 O 1.21700 * 119.99852 * 359.97438 * 18 17 2 20 20 C 1.46585 * 120.00142 * 179.97438 * 18 17 2 21 21 C 1.36260 * 125.44156 * 179.97438 * 20 18 17 22 22 C 1.37970 * 114.02893 * 180.02562 * 21 20 18 23 23 C 1.35482 * 113.93935 * 359.97438 * 22 21 20 24 24 S 1.70433 * 111.18580 * 359.71983 * 23 22 21 25 25 C 1.51718 * 123.22851 * 179.97438 * 23 22 21 26 26 C 1.53360 * 107.94821 * 344.21272 * 25 23 22 27 27 O 1.43035 * 109.10737 * 47.93339 * 26 25 23 28 28 C 1.43011 * 114.15280 * 288.41569 * 27 26 25 29 29 H 1.09004 * 109.47081 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47226 * 299.99876 * 1 2 3 31 31 H 1.09000 * 109.47551 * 60.00098 * 1 2 3 32 32 H 1.08998 * 109.47250 * 54.99993 * 4 2 1 33 33 H 1.08998 * 109.47252 * 294.99917 * 4 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 7 5 4 35 35 H 1.08993 * 109.46955 * 60.00011 * 7 5 4 36 36 H 1.09000 * 109.47050 * 179.97438 * 7 5 4 37 37 H 0.97005 * 119.99374 * 25.00210 * 8 5 4 38 38 H 0.97001 * 119.99679 * 180.02562 * 12 11 9 39 39 H 0.97002 * 120.00011 * 94.99370 * 17 2 1 40 40 H 1.08006 * 122.98557 * 0.04522 * 21 20 18 41 41 H 1.08998 * 109.76675 * 103.83095 * 25 23 22 42 42 H 1.09003 * 109.76691 * 224.55042 * 25 23 22 43 43 H 1.09001 * 109.52780 * 167.81965 * 26 25 23 44 44 H 1.08992 * 109.53171 * 288.04130 * 26 25 23 45 45 H 1.09002 * 109.69990 * 292.29461 * 28 27 26 46 46 H 1.08995 * 109.67637 * 171.71938 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5647 -0.6133 -1.3137 6 1 3.8570 0.4358 -1.2678 7 6 4.0644 -1.2250 -2.6242 8 7 4.1536 -1.3342 -0.1825 9 6 5.3943 -0.9856 0.2805 10 1 5.9388 -0.1795 -0.1885 11 6 5.9524 -1.6691 1.3520 12 7 5.2890 -2.6519 1.9234 13 14 7.6452 -1.1940 1.9832 14 1 7.5074 -0.1569 3.0371 15 1 8.3155 -2.3911 2.5515 16 1 8.4583 -0.6563 0.8630 17 7 2.0184 -0.6907 1.1961 18 6 2.1471 -0.0184 2.3571 19 8 1.8580 1.1625 2.4117 20 6 2.6352 -0.7096 3.5541 21 6 2.8077 -0.1404 4.7800 22 6 3.2809 -1.0095 5.7414 23 6 3.4866 -2.2701 5.2895 24 16 3.0836 -2.4062 3.6391 25 6 4.0041 -3.3939 6.1676 26 6 4.5968 -2.7681 7.4360 27 8 3.6713 -1.8137 7.9637 28 6 3.5574 -0.6180 7.1875 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6053 -0.2617 -2.1370 33 1 1.7516 -1.7715 -1.2057 34 1 3.7722 -2.2741 -2.6701 35 1 3.6263 -0.6886 -3.4658 36 1 5.1507 -1.1477 -2.6703 37 1 3.6646 -2.0585 0.2385 38 1 5.6790 -3.1292 2.6724 39 1 2.2490 -1.6319 1.1525 40 1 2.5929 0.8988 4.9814 41 1 3.1841 -4.0608 6.4341 42 1 4.7750 -3.9519 5.6361 43 1 4.7785 -3.5473 8.1761 44 1 5.5350 -2.2696 7.1922 45 1 4.4881 -0.0534 7.2436 46 1 2.7356 -0.0109 7.5672 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135952321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:53 Heat of formation + Delta-G solvation = -43.079137 kcal Electronic energy + Delta-G solvation = -28587.942381 eV Core-core repulsion = 24797.343326 eV Total energy + Delta-G solvation = -3790.599055 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.40586 -39.00256 -36.91903 -35.70149 -34.21714 -32.42324 -32.07347 -30.82033 -29.09970 -28.59442 -26.39284 -25.39675 -24.47822 -23.84560 -22.20899 -20.77758 -20.33715 -19.71462 -18.09788 -17.43125 -17.28865 -16.34207 -15.84368 -15.62312 -15.02765 -14.78791 -14.41850 -14.37919 -14.03355 -13.88998 -13.61422 -13.22300 -13.04317 -12.84365 -12.64675 -12.42429 -12.24544 -12.18752 -11.93442 -11.81567 -11.71524 -11.37648 -11.16215 -10.95522 -10.90928 -10.82809 -10.66321 -10.42962 -10.36254 -10.16317 -10.00843 -9.81017 -9.40960 -9.27846 -9.12815 -8.43244 -7.83605 -7.66658 -6.92040 -5.96888 -3.16449 1.25985 2.34136 2.73675 2.93199 3.34308 3.38931 3.42410 3.78609 3.99954 4.09021 4.45843 4.98321 5.04160 5.14319 5.26670 5.34174 5.39425 5.44154 5.46187 5.61348 5.63946 5.66359 5.72514 5.80416 5.82648 5.87897 5.94122 5.96522 6.01363 6.08473 6.16986 6.22724 6.31946 6.36373 6.47895 6.54281 6.61288 6.76251 6.85455 6.96537 7.04453 7.15636 7.32018 7.51422 8.16254 8.21914 8.93068 9.30494 9.83369 10.18753 11.19570 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011473 B = 0.005244 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.944753 B = 5338.492548 C = 6888.156161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.151 3.849 3 H 0.084 0.916 4 C -0.134 4.134 5 C 0.166 3.834 6 H 0.050 0.950 7 C -0.163 4.163 8 N -0.715 5.715 9 C -0.200 4.200 10 H 0.071 0.929 11 C -0.021 4.021 12 N -0.908 5.908 13 Si 0.902 3.098 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.283 1.283 17 N -0.699 5.699 18 C 0.605 3.395 19 O -0.560 6.560 20 C -0.290 4.290 21 C -0.076 4.076 22 C -0.177 4.177 23 C -0.262 4.262 24 S 0.381 5.619 25 C -0.074 4.074 26 C 0.067 3.933 27 O -0.382 6.382 28 C 0.132 3.868 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.037 0.963 36 H 0.053 0.947 37 H 0.378 0.622 38 H 0.257 0.743 39 H 0.399 0.601 40 H 0.134 0.866 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.053 0.947 45 H 0.057 0.943 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.510 -2.137 2.356 7.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.046 3.954 3 H 0.102 0.898 4 C -0.173 4.173 5 C 0.057 3.943 6 H 0.068 0.932 7 C -0.223 4.223 8 N -0.357 5.357 9 C -0.331 4.331 10 H 0.089 0.911 11 C -0.216 4.216 12 N -0.558 5.558 13 Si 0.734 3.266 14 H -0.218 1.218 15 H -0.217 1.217 16 H -0.209 1.209 17 N -0.351 5.351 18 C 0.392 3.608 19 O -0.441 6.441 20 C -0.413 4.413 21 C -0.111 4.111 22 C -0.191 4.191 23 C -0.385 4.385 24 S 0.657 5.343 25 C -0.113 4.113 26 C -0.011 4.011 27 O -0.301 6.301 28 C 0.053 3.947 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.213 0.787 38 H 0.067 0.933 39 H 0.236 0.764 40 H 0.151 0.849 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.113 0.887 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.607 -2.511 1.379 7.202 hybrid contribution 1.430 0.881 1.187 2.056 sum -5.177 -1.630 2.566 6.004 Atomic orbital electron populations 1.22213 0.96191 1.01673 1.02041 1.20806 0.92617 0.97728 0.84278 0.89782 1.22221 0.97608 1.00693 0.96772 1.20345 0.89892 0.95964 0.88097 0.93170 1.22394 1.01534 1.00405 0.97923 1.42567 1.18596 1.39789 1.34708 1.19386 0.92580 1.11805 1.09356 0.91121 1.24515 0.98767 0.99271 0.99004 1.69303 1.36836 1.24282 1.25365 0.86223 0.84159 0.77401 0.78849 1.21763 1.21711 1.20905 1.45837 1.66576 1.13946 1.08762 1.16801 0.76328 0.85713 0.81913 1.90708 1.52717 1.15417 1.85306 1.24225 1.17643 1.01141 0.98301 1.19908 1.00490 1.00035 0.90617 1.19642 1.08606 0.93420 0.97455 1.24659 1.12986 0.99541 1.01343 1.83491 1.49713 1.03600 0.97526 1.20827 1.00767 0.94868 0.94832 1.22559 0.91715 0.91869 0.94993 1.87889 1.63712 1.28699 1.49793 1.21380 1.00825 0.86211 0.86234 0.92800 0.92279 0.92069 0.90582 0.91712 0.93512 0.94395 0.92826 0.78713 0.93254 0.76373 0.84856 0.90211 0.89808 0.88733 0.92880 0.92544 0.88304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.48 37.16 0.35 -1.86 16 2 C 0.15 2.44 2.57 -67.93 -0.17 2.27 16 3 H 0.08 1.54 7.58 -51.93 -0.39 1.15 16 4 C -0.13 -1.95 4.43 -26.73 -0.12 -2.07 16 5 C 0.17 2.96 2.89 -67.93 -0.20 2.76 16 6 H 0.05 0.96 8.08 -51.93 -0.42 0.55 16 7 C -0.16 -2.64 9.49 37.16 0.35 -2.28 16 8 N -0.71 -15.29 3.84 -53.43 -0.21 -15.50 16 9 C -0.20 -4.94 9.93 -15.06 -0.15 -5.09 16 10 H 0.07 1.79 7.83 -52.49 -0.41 1.37 16 11 C -0.02 -0.53 5.50 -17.43 -0.10 -0.62 16 12 N -0.91 -22.12 10.21 55.49 0.57 -21.56 16 13 Si 0.90 21.26 29.55 -169.99 -5.02 16.24 16 14 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 N -0.70 -12.96 3.80 -55.14 -0.21 -13.17 16 18 C 0.60 12.87 7.75 -12.89 -0.10 12.77 16 19 O -0.56 -13.19 16.49 5.19 0.09 -13.11 16 20 C -0.29 -5.96 6.43 -36.93 -0.24 -6.20 16 21 C -0.08 -1.50 9.84 -40.39 -0.40 -1.90 16 22 C -0.18 -3.20 5.84 -104.89 -0.61 -3.81 16 23 C -0.26 -4.67 6.23 -34.79 -0.22 -4.89 16 24 S 0.38 7.11 19.25 -107.50 -2.07 5.04 16 25 C -0.07 -1.08 6.52 -27.19 -0.18 -1.25 16 26 C 0.07 0.90 6.82 37.34 0.25 1.16 16 27 O -0.38 -5.87 10.72 -35.23 -0.38 -6.25 16 28 C 0.13 2.01 7.12 36.82 0.26 2.28 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.38 8.22 5.70 -40.82 -0.23 7.99 16 38 H 0.26 6.25 8.23 -40.82 -0.34 5.92 16 39 H 0.40 7.35 5.62 -40.82 -0.23 7.12 16 40 H 0.13 2.53 8.05 -52.48 -0.42 2.10 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.05 0.73 8.08 -51.93 -0.42 0.31 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 381.04 15.07 5.74 5.74 Total: -1.00 -28.22 381.04 -9.90 -38.12 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -7.16 Total: 13.20 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -1.25 Total: -8.76 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: 0.15 Total: -50.22 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.29 Total: -19.36 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 7.11 SS G_CDS: -2.07 Total: 5.04 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -28.22 -9.90 -38.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135952321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.958 kcal (2) G-P(sol) polarization free energy of solvation -28.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds