Wall clock time and date at job start Tue Mar 31 2020 20:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47038 * 2 1 4 4 C 1.53001 * 109.46947 * 240.00138 * 2 1 3 5 5 C 1.52997 * 109.47049 * 175.00112 * 4 2 1 6 6 H 1.09001 * 109.47289 * 305.00191 * 5 4 2 7 7 C 1.53006 * 109.47127 * 185.00237 * 5 4 2 8 8 N 1.46500 * 109.47473 * 64.99864 * 5 4 2 9 9 C 1.36932 * 120.00140 * 205.00132 * 8 5 4 10 10 H 1.07994 * 120.00447 * 359.97438 * 9 8 5 11 11 C 1.38813 * 119.99838 * 180.02562 * 9 8 5 12 12 N 1.31623 * 120.00145 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99922 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47005 * 89.99771 * 13 11 9 15 15 H 1.48503 * 109.46914 * 209.99621 * 13 11 9 16 16 H 1.48498 * 109.47180 * 329.99943 * 13 11 9 17 17 N 1.46503 * 109.47413 * 120.00380 * 2 1 3 18 18 C 1.34776 * 119.99872 * 275.00321 * 17 2 1 19 19 O 1.21700 * 119.99852 * 359.97438 * 18 17 2 20 20 C 1.46585 * 120.00142 * 179.97438 * 18 17 2 21 21 C 1.36260 * 125.44156 * 179.97438 * 20 18 17 22 22 C 1.37970 * 114.02893 * 180.02562 * 21 20 18 23 23 C 1.35482 * 113.93935 * 359.97438 * 22 21 20 24 24 S 1.70433 * 111.18580 * 359.71983 * 23 22 21 25 25 C 1.51718 * 123.22851 * 179.97438 * 23 22 21 26 26 C 1.53360 * 107.94821 * 344.21272 * 25 23 22 27 27 O 1.43035 * 109.10737 * 47.93339 * 26 25 23 28 28 C 1.43011 * 114.15280 * 288.41569 * 27 26 25 29 29 H 1.09004 * 109.47081 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47226 * 299.99876 * 1 2 3 31 31 H 1.09000 * 109.47551 * 60.00098 * 1 2 3 32 32 H 1.08998 * 109.47250 * 54.99993 * 4 2 1 33 33 H 1.08998 * 109.47252 * 294.99917 * 4 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 7 5 4 35 35 H 1.08993 * 109.46955 * 60.00011 * 7 5 4 36 36 H 1.09000 * 109.47050 * 179.97438 * 7 5 4 37 37 H 0.97005 * 119.99374 * 25.00210 * 8 5 4 38 38 H 0.97001 * 119.99679 * 180.02562 * 12 11 9 39 39 H 0.97002 * 120.00011 * 94.99370 * 17 2 1 40 40 H 1.08006 * 122.98557 * 0.04522 * 21 20 18 41 41 H 1.08998 * 109.76675 * 103.83095 * 25 23 22 42 42 H 1.09003 * 109.76691 * 224.55042 * 25 23 22 43 43 H 1.09001 * 109.52780 * 167.81965 * 26 25 23 44 44 H 1.08992 * 109.53171 * 288.04130 * 26 25 23 45 45 H 1.09002 * 109.69990 * 292.29461 * 28 27 26 46 46 H 1.08995 * 109.67637 * 171.71938 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5647 -0.6133 -1.3137 6 1 3.8570 0.4358 -1.2678 7 6 4.0644 -1.2250 -2.6242 8 7 4.1536 -1.3342 -0.1825 9 6 5.3943 -0.9856 0.2805 10 1 5.9388 -0.1795 -0.1885 11 6 5.9524 -1.6691 1.3520 12 7 5.2890 -2.6519 1.9234 13 14 7.6452 -1.1940 1.9832 14 1 7.5074 -0.1569 3.0371 15 1 8.3155 -2.3911 2.5515 16 1 8.4583 -0.6563 0.8630 17 7 2.0184 -0.6907 1.1961 18 6 2.1471 -0.0184 2.3571 19 8 1.8580 1.1625 2.4117 20 6 2.6352 -0.7096 3.5541 21 6 2.8077 -0.1404 4.7800 22 6 3.2809 -1.0095 5.7414 23 6 3.4866 -2.2701 5.2895 24 16 3.0836 -2.4062 3.6391 25 6 4.0041 -3.3939 6.1676 26 6 4.5968 -2.7681 7.4360 27 8 3.6713 -1.8137 7.9637 28 6 3.5574 -0.6180 7.1875 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6053 -0.2617 -2.1370 33 1 1.7516 -1.7715 -1.2057 34 1 3.7722 -2.2741 -2.6701 35 1 3.6263 -0.6886 -3.4658 36 1 5.1507 -1.1477 -2.6703 37 1 3.6646 -2.0585 0.2385 38 1 5.6790 -3.1292 2.6724 39 1 2.2490 -1.6319 1.1525 40 1 2.5929 0.8988 4.9814 41 1 3.1841 -4.0608 6.4341 42 1 4.7750 -3.9519 5.6361 43 1 4.7785 -3.5473 8.1761 44 1 5.5350 -2.2696 7.1922 45 1 4.4881 -0.0534 7.2436 46 1 2.7356 -0.0109 7.5672 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135952321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:52 Heat of formation + Delta-G solvation = -59.063806 kcal Electronic energy + Delta-G solvation = -28588.635528 eV Core-core repulsion = 24797.343326 eV Total energy + Delta-G solvation = -3791.292202 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.88686 -40.34508 -38.40128 -37.11400 -35.79856 -34.07954 -33.34073 -32.28040 -30.57156 -30.06340 -27.61944 -26.67355 -25.84734 -25.60843 -23.52179 -22.15119 -21.77555 -21.20955 -19.50860 -19.17412 -18.78493 -17.62194 -17.26788 -16.90521 -16.68269 -16.15093 -15.93160 -15.76957 -15.60430 -15.48482 -15.14646 -14.54122 -14.39815 -14.24646 -13.99789 -13.78217 -13.61635 -13.51723 -13.32851 -13.23527 -12.93947 -12.81989 -12.70356 -12.62421 -12.35921 -12.26264 -12.18188 -11.87968 -11.75246 -11.67506 -11.44910 -11.43023 -10.97038 -10.90304 -10.62643 -9.97701 -9.32013 -9.20495 -8.59580 -7.82993 -5.03497 -0.24402 0.84556 1.24193 1.41524 1.44134 1.47309 1.48971 2.26811 2.49897 2.57762 2.91293 3.47666 3.73068 3.77088 3.88175 3.98569 4.07032 4.14897 4.21590 4.33290 4.36855 4.41704 4.49503 4.55145 4.64884 4.66793 4.74111 4.81950 4.82245 4.86061 4.89698 4.95265 5.04203 5.09595 5.13110 5.17808 5.34993 5.38948 5.42640 5.58181 5.58767 5.61953 5.72671 6.14368 6.34836 6.64135 7.32910 7.43540 8.12161 8.40551 9.30867 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011473 B = 0.005244 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.944753 B = 5338.492548 C = 6888.156161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.144 3.856 3 H 0.057 0.943 4 C -0.120 4.120 5 C 0.159 3.841 6 H 0.029 0.971 7 C -0.152 4.152 8 N -0.718 5.718 9 C -0.217 4.217 10 H 0.054 0.946 11 C -0.048 4.048 12 N -0.912 5.912 13 Si 0.933 3.067 14 H -0.309 1.309 15 H -0.289 1.289 16 H -0.285 1.285 17 N -0.690 5.690 18 C 0.596 3.404 19 O -0.594 6.594 20 C -0.318 4.318 21 C -0.084 4.084 22 C -0.188 4.188 23 C -0.258 4.258 24 S 0.386 5.614 25 C -0.077 4.077 26 C 0.064 3.936 27 O -0.388 6.388 28 C 0.133 3.867 29 H 0.069 0.931 30 H 0.037 0.963 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.029 0.971 37 H 0.375 0.625 38 H 0.253 0.747 39 H 0.400 0.600 40 H 0.133 0.867 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.130 0.870 44 H 0.048 0.952 45 H 0.064 0.936 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.516 -3.497 2.520 8.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.040 3.960 3 H 0.075 0.925 4 C -0.159 4.159 5 C 0.051 3.949 6 H 0.047 0.953 7 C -0.212 4.212 8 N -0.361 5.361 9 C -0.349 4.349 10 H 0.072 0.928 11 C -0.242 4.242 12 N -0.562 5.562 13 Si 0.766 3.234 14 H -0.238 1.238 15 H -0.215 1.215 16 H -0.211 1.211 17 N -0.340 5.340 18 C 0.384 3.616 19 O -0.479 6.479 20 C -0.441 4.441 21 C -0.119 4.119 22 C -0.201 4.201 23 C -0.381 4.381 24 S 0.661 5.339 25 C -0.116 4.116 26 C -0.014 4.014 27 O -0.306 6.306 28 C 0.055 3.945 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.108 0.892 32 H 0.130 0.870 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.048 0.952 37 H 0.210 0.790 38 H 0.063 0.937 39 H 0.238 0.762 40 H 0.151 0.849 41 H 0.118 0.882 42 H 0.110 0.890 43 H 0.148 0.852 44 H 0.067 0.933 45 H 0.082 0.918 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.628 -3.895 1.515 8.698 hybrid contribution 1.688 1.322 1.244 2.478 sum -5.940 -2.573 2.759 7.037 Atomic orbital electron populations 1.22120 0.93687 1.02834 1.02430 1.21019 0.94528 0.96340 0.84116 0.92457 1.22154 0.94938 1.01616 0.97158 1.20529 0.92102 0.94478 0.87761 0.95298 1.22244 1.00100 1.00892 0.97927 1.42551 1.17693 1.40042 1.35801 1.19328 0.94052 1.11702 1.09806 0.92771 1.24830 0.99900 0.99882 0.99594 1.69383 1.36968 1.24380 1.25449 0.85751 0.83293 0.76519 0.77808 1.23759 1.21537 1.21089 1.45886 1.65515 1.13864 1.08770 1.17058 0.76186 0.85496 0.82883 1.90670 1.54475 1.16738 1.85980 1.24432 1.18704 1.02415 0.98540 1.20154 1.00331 1.00445 0.90940 1.19991 1.08074 0.93256 0.98811 1.25209 1.11052 1.00613 1.01259 1.83368 1.49898 1.02137 0.98477 1.21038 1.01688 0.94099 0.94761 1.22771 0.90948 0.92299 0.95392 1.87892 1.64195 1.28837 1.49720 1.21490 1.01938 0.86674 0.84445 0.91180 0.94405 0.89180 0.86956 0.90369 0.93130 0.91233 0.95177 0.79027 0.93663 0.76225 0.84946 0.88240 0.88995 0.85230 0.93313 0.91800 0.86499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.88 9.48 71.98 0.68 -3.19 16 2 C 0.14 4.57 2.57 44.99 0.12 4.69 16 3 H 0.06 2.14 7.58 -2.39 -0.02 2.12 16 4 C -0.12 -3.23 4.43 30.59 0.14 -3.10 16 5 C 0.16 5.58 2.89 44.99 0.13 5.71 16 6 H 0.03 1.13 8.08 -2.39 -0.02 1.11 16 7 C -0.15 -4.69 9.49 71.98 0.68 -4.01 16 8 N -0.72 -30.98 3.84 -322.94 -1.24 -32.23 16 9 C -0.22 -10.95 9.93 84.03 0.83 -10.12 16 10 H 0.05 2.85 7.83 -2.91 -0.02 2.83 16 11 C -0.05 -2.43 5.50 84.86 0.47 -1.96 16 12 N -0.91 -44.56 10.21 21.65 0.22 -44.34 16 13 Si 0.93 44.23 29.55 68.60 2.03 46.26 16 14 H -0.31 -15.45 7.11 99.48 0.71 -14.74 16 15 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 16 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 17 N -0.69 -25.76 3.80 -446.59 -1.70 -27.46 16 18 C 0.60 26.05 7.75 86.42 0.67 26.72 16 19 O -0.59 -29.06 16.49 -4.35 -0.07 -29.13 16 20 C -0.32 -13.34 6.43 23.99 0.15 -13.19 16 21 C -0.08 -3.33 9.84 21.74 0.21 -3.12 16 22 C -0.19 -6.64 5.84 -20.04 -0.12 -6.75 16 23 C -0.26 -8.90 6.23 25.37 0.16 -8.74 16 24 S 0.39 14.27 19.25 -56.49 -1.09 13.18 16 25 C -0.08 -2.04 6.52 30.29 0.20 -1.85 16 26 C 0.06 1.53 6.82 72.10 0.49 2.03 16 27 O -0.39 -10.88 10.72 -148.98 -1.60 -12.47 16 28 C 0.13 3.83 7.12 71.77 0.51 4.34 16 29 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.38 16.32 5.70 -92.70 -0.53 15.79 16 38 H 0.25 12.28 8.23 -92.71 -0.76 11.51 16 39 H 0.40 14.73 5.62 -92.71 -0.52 14.21 16 40 H 0.13 5.16 8.05 -2.91 -0.02 5.14 16 41 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.05 1.23 8.08 -2.39 -0.02 1.21 16 45 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -62.67 381.04 1.84 -60.84 By element: Atomic # 1 Polarization: 37.94 SS G_CDS: -0.05 Total: 37.89 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: 5.33 Total: -12.54 kcal Atomic # 7 Polarization: -101.31 SS G_CDS: -2.72 Total: -104.03 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -1.67 Total: -41.61 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 14.27 SS G_CDS: -1.09 Total: 13.18 kcal Total: -62.67 1.84 -60.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135952321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.775 kcal (2) G-P(sol) polarization free energy of solvation -62.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds