Wall clock time and date at job start Tue Mar 31 2020 20:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47433 * 2 1 4 4 C 1.50698 * 109.47638 * 120.00284 * 2 1 3 5 5 O 1.21274 * 120.00539 * 119.99505 * 4 2 1 6 6 N 1.34778 * 119.99795 * 300.00205 * 4 2 1 7 7 C 1.46500 * 120.00517 * 179.97438 * 6 4 2 8 8 C 1.52995 * 109.47428 * 179.97438 * 7 6 4 9 9 H 1.09010 * 108.56831 * 62.05785 * 8 7 6 10 10 C 1.46921 * 108.61994 * 179.97438 * 8 7 6 11 11 N 1.50113 * 106.77726 * 177.92514 * 10 8 7 12 12 C 1.36930 * 120.64116 * 111.33014 * 11 10 8 13 13 H 1.08003 * 120.00471 * 155.65586 * 12 11 10 14 14 C 1.38816 * 119.99760 * 335.65579 * 12 11 10 15 15 N 1.31615 * 120.00122 * 340.74133 * 14 12 11 16 16 Si 1.86803 * 120.00060 * 160.73187 * 14 12 11 17 17 H 1.48505 * 109.46848 * 90.00469 * 16 14 12 18 18 H 1.48498 * 109.47498 * 210.00407 * 16 14 12 19 19 H 1.48499 * 109.47279 * 330.00596 * 16 14 12 20 20 C 1.43431 * 118.72540 * 291.34777 * 11 10 8 21 21 C 1.55326 * 116.23794 * 89.35444 * 20 11 10 22 22 C 1.55190 * 108.87534 * 319.46473 * 21 20 11 23 23 O 1.39638 * 110.56715 * 322.14101 * 22 21 20 24 24 C 1.50708 * 109.47147 * 240.00132 * 2 1 3 25 25 C 1.33382 * 125.20442 * 119.99978 * 24 2 1 26 26 C 1.38426 * 114.92263 * 180.02562 * 25 24 2 27 27 C 1.33392 * 114.91779 * 0.24520 * 26 25 24 28 28 S 1.75879 * 125.20020 * 300.04360 * 24 2 1 29 29 H 1.08996 * 109.47211 * 300.00121 * 1 2 3 30 30 H 1.08995 * 109.47400 * 59.99728 * 1 2 3 31 31 H 1.08998 * 109.47433 * 179.97438 * 1 2 3 32 32 H 0.97011 * 119.99773 * 359.97438 * 6 4 2 33 33 H 1.09005 * 109.46555 * 299.99854 * 7 6 4 34 34 H 1.08999 * 109.46976 * 59.99343 * 7 6 4 35 35 H 1.09004 * 109.98987 * 297.24287 * 10 8 7 36 36 H 1.09002 * 109.99138 * 58.51070 * 10 8 7 37 37 H 0.97000 * 120.00425 * 179.97438 * 15 14 12 38 38 H 1.08996 * 108.12357 * 211.11064 * 20 11 10 39 39 H 1.08997 * 108.12816 * 327.59510 * 20 11 10 40 40 H 1.09007 * 109.56925 * 79.27788 * 21 20 11 41 41 H 1.08999 * 109.57130 * 199.64476 * 21 20 11 42 42 H 1.08997 * 109.25717 * 82.42286 * 22 21 20 43 43 H 1.09001 * 109.25543 * 201.86123 * 22 21 20 44 44 H 1.08000 * 122.53901 * 0.02562 * 25 24 2 45 45 H 1.07992 * 122.54208 * 179.97438 * 26 25 24 46 46 H 1.07996 * 125.20228 * 179.75907 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 2.1947 -0.9409 3.6507 8 6 1.6853 -0.2193 4.8999 9 1 0.5960 -0.2591 4.9039 10 6 2.1844 -0.9270 6.0868 11 7 1.7051 -0.1577 7.2834 12 6 0.7610 -0.6879 8.1215 13 1 0.6992 -0.3528 9.1464 14 6 -0.1170 -1.6562 7.6539 15 7 -0.3113 -1.7986 6.3600 16 14 -1.0224 -2.7573 8.8611 17 1 -2.3122 -2.1244 9.2369 18 1 -1.2835 -4.0755 8.2290 19 1 -0.1914 -2.9474 10.0770 20 6 2.2549 1.1435 7.5318 21 6 1.5192 2.3384 6.8658 22 6 1.0996 1.9314 5.4282 23 8 2.0879 1.1448 4.8329 24 6 2.0323 -0.7104 -1.2305 25 6 2.8024 -0.1647 -2.1730 26 6 3.1395 -1.0124 -3.2141 27 6 2.6388 -2.2452 -3.1195 28 16 1.6919 -2.3857 -1.6440 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.1493 0.5389 2.5435 33 1 1.8310 -1.9684 3.6505 34 1 3.2847 -0.9413 3.6508 35 1 1.7852 -1.9410 6.1113 36 1 3.2739 -0.9561 6.0726 37 1 -0.9244 -2.4755 6.0332 38 1 2.2628 1.3082 8.6093 39 1 3.2886 1.1466 7.1863 40 1 0.6323 2.5911 7.4471 41 1 2.1864 3.1992 6.8215 42 1 0.1684 1.3666 5.4718 43 1 0.9468 2.8299 4.8303 44 1 3.1376 0.8610 -2.1273 45 1 3.7572 -0.6983 -4.0423 46 1 2.7930 -3.0365 -3.8381 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150316127.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:15 Heat of formation + Delta-G solvation = -18.260385 kcal Electronic energy + Delta-G solvation = -27803.332424 eV Core-core repulsion = 24013.809591 eV Total energy + Delta-G solvation = -3789.522833 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.87839 -38.89316 -37.66356 -35.04414 -34.50782 -33.97311 -32.12079 -31.13146 -28.87296 -28.40661 -25.77425 -25.34543 -24.66491 -23.21450 -22.27918 -20.80529 -19.99851 -19.60026 -19.40846 -17.60253 -16.98782 -16.55886 -16.05534 -15.65965 -15.42095 -14.90747 -14.82670 -14.54284 -14.16408 -13.89193 -13.70339 -13.30479 -13.05955 -13.02593 -12.73666 -12.62966 -12.38978 -12.30196 -12.09947 -11.99855 -11.72132 -11.56186 -11.41967 -11.22704 -10.86278 -10.75568 -10.62419 -10.51620 -10.18603 -9.99045 -9.72416 -9.62213 -9.51382 -8.83595 -8.70165 -8.66540 -8.51872 -8.34460 -6.84225 -5.94558 -3.32932 0.98344 1.67116 2.06993 2.68927 2.85714 3.31139 3.39781 3.42275 3.51303 4.41710 4.43221 4.66134 4.82275 4.93823 5.01101 5.17192 5.22005 5.26284 5.42922 5.48424 5.56299 5.63739 5.70952 5.79338 5.89761 5.94280 5.98811 6.05642 6.12328 6.24772 6.30716 6.39620 6.43716 6.46178 6.55092 6.64467 6.68314 6.79333 6.90560 6.93667 7.09779 7.30566 7.69778 7.79978 8.10463 8.29924 8.46900 9.04824 9.73049 10.27337 11.14574 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017073 B = 0.002847 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.607513 B = 9832.820545 C =10777.202418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.043 4.043 3 H 0.112 0.888 4 C 0.509 3.491 5 O -0.535 6.535 6 N -0.710 5.710 7 C 0.122 3.878 8 C 0.061 3.939 9 H 0.107 0.893 10 C 0.143 3.857 11 N -0.587 5.587 12 C -0.249 4.249 13 H 0.069 0.931 14 C 0.002 3.998 15 N -0.907 5.907 16 Si 0.903 3.097 17 H -0.288 1.288 18 H -0.289 1.289 19 H -0.280 1.280 20 C 0.161 3.839 21 C -0.172 4.172 22 C 0.067 3.933 23 O -0.370 6.370 24 C -0.151 4.151 25 C -0.144 4.144 26 C -0.137 4.137 27 C -0.229 4.229 28 S 0.143 5.857 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.400 0.600 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.019 0.981 37 H 0.255 0.745 38 H 0.033 0.967 39 H 0.031 0.969 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.063 0.937 43 H 0.051 0.949 44 H 0.136 0.864 45 H 0.135 0.865 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.892 5.071 -15.936 16.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.066 4.066 3 H 0.130 0.870 4 C 0.294 3.706 5 O -0.412 6.412 6 N -0.361 5.361 7 C -0.002 4.002 8 C 0.002 3.998 9 H 0.125 0.875 10 C 0.018 3.982 11 N -0.308 5.308 12 C -0.378 4.378 13 H 0.087 0.913 14 C -0.195 4.195 15 N -0.553 5.553 16 Si 0.733 3.267 17 H -0.215 1.215 18 H -0.215 1.215 19 H -0.206 1.206 20 C 0.032 3.968 21 C -0.213 4.213 22 C -0.011 4.011 23 O -0.288 6.288 24 C -0.270 4.270 25 C -0.174 4.174 26 C -0.168 4.168 27 C -0.365 4.365 28 S 0.408 5.592 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.234 0.766 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.122 0.878 36 H 0.037 0.963 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.050 0.950 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.154 0.846 45 H 0.153 0.847 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.658 3.076 -15.445 15.836 hybrid contribution -0.156 1.008 0.048 1.021 sum 1.502 4.084 -15.397 16.000 Atomic orbital electron populations 1.21851 0.91704 1.03333 1.03267 1.19843 0.97634 0.99878 0.89248 0.87012 1.20329 0.80844 0.84936 0.84527 1.90720 1.37747 1.26125 1.86596 1.45872 1.53019 1.31795 1.05373 1.21713 0.99018 0.96471 0.83040 1.22203 1.02508 0.81511 0.93546 0.87540 1.20741 0.94255 0.98253 0.84926 1.44105 1.46008 1.11775 1.28896 1.19247 1.08126 1.18723 0.91706 0.91336 1.24893 0.97309 1.01556 0.95782 1.69856 1.38247 1.35530 1.11651 0.86283 0.79450 0.80317 0.80640 1.21539 1.21502 1.20586 1.20368 0.94810 0.84902 0.96751 1.23581 1.00734 0.99747 0.97262 1.22346 0.91762 0.94134 0.92826 1.87508 1.45263 1.17694 1.78381 1.23953 1.05415 0.97622 0.99981 1.20036 1.00904 1.01507 0.94987 1.20042 1.03079 0.93245 1.00401 1.25695 1.06851 1.01522 1.02477 1.84369 1.49729 1.09642 1.15449 0.91020 0.91056 0.91760 0.76566 0.90379 0.92063 0.87819 0.96284 0.93469 0.94906 0.95044 0.92495 0.93188 0.91899 0.93116 0.84593 0.84681 0.82243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.01 37.16 0.33 -1.09 16 2 C -0.04 -0.50 3.10 -92.92 -0.29 -0.79 16 3 H 0.11 1.08 8.08 -51.93 -0.42 0.66 16 4 C 0.51 7.92 7.12 -10.99 -0.08 7.85 16 5 O -0.53 -10.24 15.25 5.56 0.08 -10.15 16 6 N -0.71 -10.98 5.29 -60.30 -0.32 -11.30 16 7 C 0.12 2.21 5.26 -4.04 -0.02 2.19 16 8 C 0.06 1.21 2.01 -29.65 -0.06 1.15 16 9 H 0.11 2.37 5.23 -51.92 -0.27 2.10 16 10 C 0.14 3.20 4.71 -4.93 -0.02 3.18 16 11 N -0.59 -13.91 2.61 -174.50 -0.46 -14.37 16 12 C -0.25 -6.40 9.62 -15.06 -0.14 -6.55 16 13 H 0.07 1.77 7.88 -52.48 -0.41 1.36 16 14 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 15 N -0.91 -23.34 9.56 55.49 0.53 -22.81 16 16 Si 0.90 20.68 29.60 -169.99 -5.03 15.65 16 17 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 C 0.16 3.35 5.32 -4.43 -0.02 3.32 16 21 C -0.17 -3.14 6.75 -24.34 -0.16 -3.31 16 22 C 0.07 1.21 6.38 38.32 0.24 1.46 16 23 O -0.37 -7.02 9.34 -31.93 -0.30 -7.32 16 24 C -0.15 -1.90 4.60 -36.00 -0.17 -2.07 16 25 C -0.14 -1.62 10.01 -41.21 -0.41 -2.03 16 26 C -0.14 -1.43 10.18 -41.21 -0.42 -1.85 16 27 C -0.23 -2.47 11.23 29.04 0.33 -2.15 16 28 S 0.14 1.82 22.18 -107.50 -2.38 -0.56 16 29 H 0.07 0.65 7.56 -51.93 -0.39 0.26 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.71 8.00 -51.93 -0.42 0.29 16 32 H 0.40 5.47 7.61 -40.81 -0.31 5.16 16 33 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.10 2.55 6.03 -51.93 -0.31 2.24 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 38 H 0.03 0.67 7.96 -51.93 -0.41 0.26 16 39 H 0.03 0.64 7.99 -51.93 -0.41 0.23 16 40 H 0.06 1.05 8.14 -51.92 -0.42 0.62 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 1.28 6.66 -51.93 -0.35 0.94 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 45 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 46 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 377.87 15.07 5.69 5.69 Total: -1.00 -28.85 377.87 -10.23 -39.08 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -7.07 Total: 6.80 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -0.98 Total: -0.72 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: -0.24 Total: -48.47 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.21 Total: -17.47 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -2.38 Total: -0.56 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.85 -10.23 -39.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150316127.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.821 kcal (2) G-P(sol) polarization free energy of solvation -28.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds