Wall clock time and date at job start Tue Mar 31 2020 20:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47433 * 2 1 4 4 C 1.50698 * 109.47638 * 120.00284 * 2 1 3 5 5 O 1.21274 * 120.00539 * 119.99505 * 4 2 1 6 6 N 1.34778 * 119.99795 * 300.00205 * 4 2 1 7 7 C 1.46500 * 120.00517 * 179.97438 * 6 4 2 8 8 C 1.52995 * 109.47428 * 179.97438 * 7 6 4 9 9 H 1.09010 * 108.56831 * 62.05785 * 8 7 6 10 10 C 1.46921 * 108.61994 * 179.97438 * 8 7 6 11 11 N 1.50113 * 106.77726 * 177.92514 * 10 8 7 12 12 C 1.36930 * 120.64116 * 111.33014 * 11 10 8 13 13 H 1.08003 * 120.00471 * 155.65586 * 12 11 10 14 14 C 1.38816 * 119.99760 * 335.65579 * 12 11 10 15 15 N 1.31615 * 120.00122 * 340.74133 * 14 12 11 16 16 Si 1.86803 * 120.00060 * 160.73187 * 14 12 11 17 17 H 1.48505 * 109.46848 * 90.00469 * 16 14 12 18 18 H 1.48498 * 109.47498 * 210.00407 * 16 14 12 19 19 H 1.48499 * 109.47279 * 330.00596 * 16 14 12 20 20 C 1.43431 * 118.72540 * 291.34777 * 11 10 8 21 21 C 1.55326 * 116.23794 * 89.35444 * 20 11 10 22 22 C 1.55190 * 108.87534 * 319.46473 * 21 20 11 23 23 O 1.39638 * 110.56715 * 322.14101 * 22 21 20 24 24 C 1.50708 * 109.47147 * 240.00132 * 2 1 3 25 25 C 1.33382 * 125.20442 * 119.99978 * 24 2 1 26 26 C 1.38426 * 114.92263 * 180.02562 * 25 24 2 27 27 C 1.33392 * 114.91779 * 0.24520 * 26 25 24 28 28 S 1.75879 * 125.20020 * 300.04360 * 24 2 1 29 29 H 1.08996 * 109.47211 * 300.00121 * 1 2 3 30 30 H 1.08995 * 109.47400 * 59.99728 * 1 2 3 31 31 H 1.08998 * 109.47433 * 179.97438 * 1 2 3 32 32 H 0.97011 * 119.99773 * 359.97438 * 6 4 2 33 33 H 1.09005 * 109.46555 * 299.99854 * 7 6 4 34 34 H 1.08999 * 109.46976 * 59.99343 * 7 6 4 35 35 H 1.09004 * 109.98987 * 297.24287 * 10 8 7 36 36 H 1.09002 * 109.99138 * 58.51070 * 10 8 7 37 37 H 0.97000 * 120.00425 * 179.97438 * 15 14 12 38 38 H 1.08996 * 108.12357 * 211.11064 * 20 11 10 39 39 H 1.08997 * 108.12816 * 327.59510 * 20 11 10 40 40 H 1.09007 * 109.56925 * 79.27788 * 21 20 11 41 41 H 1.08999 * 109.57130 * 199.64476 * 21 20 11 42 42 H 1.08997 * 109.25717 * 82.42286 * 22 21 20 43 43 H 1.09001 * 109.25543 * 201.86123 * 22 21 20 44 44 H 1.08000 * 122.53901 * 0.02562 * 25 24 2 45 45 H 1.07992 * 122.54208 * 179.97438 * 26 25 24 46 46 H 1.07996 * 125.20228 * 179.75907 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 2.1947 -0.9409 3.6507 8 6 1.6853 -0.2193 4.8999 9 1 0.5960 -0.2591 4.9039 10 6 2.1844 -0.9270 6.0868 11 7 1.7051 -0.1577 7.2834 12 6 0.7610 -0.6879 8.1215 13 1 0.6992 -0.3528 9.1464 14 6 -0.1170 -1.6562 7.6539 15 7 -0.3113 -1.7986 6.3600 16 14 -1.0224 -2.7573 8.8611 17 1 -2.3122 -2.1244 9.2369 18 1 -1.2835 -4.0755 8.2290 19 1 -0.1914 -2.9474 10.0770 20 6 2.2549 1.1435 7.5318 21 6 1.5192 2.3384 6.8658 22 6 1.0996 1.9314 5.4282 23 8 2.0879 1.1448 4.8329 24 6 2.0323 -0.7104 -1.2305 25 6 2.8024 -0.1647 -2.1730 26 6 3.1395 -1.0124 -3.2141 27 6 2.6388 -2.2452 -3.1195 28 16 1.6919 -2.3857 -1.6440 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.1493 0.5389 2.5435 33 1 1.8310 -1.9684 3.6505 34 1 3.2847 -0.9413 3.6508 35 1 1.7852 -1.9410 6.1113 36 1 3.2739 -0.9561 6.0726 37 1 -0.9244 -2.4755 6.0332 38 1 2.2628 1.3082 8.6093 39 1 3.2886 1.1466 7.1863 40 1 0.6323 2.5911 7.4471 41 1 2.1864 3.1992 6.8215 42 1 0.1684 1.3666 5.4718 43 1 0.9468 2.8299 4.8303 44 1 3.1376 0.8610 -2.1273 45 1 3.7572 -0.6983 -4.0423 46 1 2.7930 -3.0365 -3.8381 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150316127.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:14 Heat of formation + Delta-G solvation = -34.706673 kcal Electronic energy + Delta-G solvation = -27804.045589 eV Core-core repulsion = 24013.809591 eV Total energy + Delta-G solvation = -3790.235998 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.19743 -40.36563 -38.57130 -36.79815 -35.93903 -34.95553 -33.77466 -32.84499 -30.33505 -29.43159 -27.27799 -27.06332 -25.66194 -24.53218 -23.58577 -22.39290 -21.35529 -21.14413 -20.23798 -19.01501 -18.50175 -17.72594 -17.57333 -16.88145 -16.68496 -16.41506 -16.23571 -15.98204 -15.65270 -15.48778 -14.87008 -14.62791 -14.55164 -14.20393 -13.99129 -13.82742 -13.56468 -13.51009 -13.29013 -13.19681 -13.10590 -12.92079 -12.64164 -12.56490 -12.49923 -12.41369 -12.31396 -11.92557 -11.76995 -11.50336 -11.37295 -11.18543 -10.87166 -10.55638 -10.27090 -10.05051 -9.55127 -9.28319 -8.71560 -7.89795 -5.30078 0.12145 0.79853 1.21755 1.46508 1.51416 1.58331 1.64215 1.84916 2.30673 2.52321 3.11920 3.27835 3.50588 3.53554 3.80883 4.06581 4.16784 4.25427 4.28164 4.32093 4.38414 4.41940 4.56763 4.66450 4.72279 4.73928 4.79183 4.80543 4.81164 4.85770 4.97923 5.08262 5.17657 5.19226 5.19855 5.24348 5.35165 5.40167 5.41371 5.44632 5.51888 5.64607 5.68295 6.36246 6.52224 6.58412 7.10746 7.25096 7.83189 8.36108 9.16073 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017073 B = 0.002847 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.607513 B = 9832.820545 C =10777.202418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.033 4.033 3 H 0.141 0.859 4 C 0.506 3.494 5 O -0.574 6.574 6 N -0.704 5.704 7 C 0.135 3.865 8 C 0.082 3.918 9 H 0.085 0.915 10 C 0.144 3.856 11 N -0.602 5.602 12 C -0.263 4.263 13 H 0.063 0.937 14 C -0.036 4.036 15 N -0.916 5.916 16 Si 0.957 3.043 17 H -0.287 1.287 18 H -0.294 1.294 19 H -0.280 1.280 20 C 0.153 3.847 21 C -0.165 4.165 22 C 0.068 3.932 23 O -0.366 6.366 24 C -0.170 4.170 25 C -0.141 4.141 26 C -0.141 4.141 27 C -0.224 4.224 28 S 0.081 5.919 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.046 0.954 32 H 0.411 0.589 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.022 0.978 37 H 0.251 0.749 38 H 0.030 0.970 39 H 0.034 0.966 40 H 0.054 0.946 41 H 0.078 0.922 42 H 0.036 0.964 43 H 0.089 0.911 44 H 0.160 0.840 45 H 0.164 0.836 46 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.189 7.228 -17.395 18.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.056 4.056 3 H 0.158 0.842 4 C 0.293 3.707 5 O -0.454 6.454 6 N -0.355 5.355 7 C 0.010 3.990 8 C 0.023 3.977 9 H 0.103 0.897 10 C 0.020 3.980 11 N -0.323 5.323 12 C -0.393 4.393 13 H 0.080 0.920 14 C -0.232 4.232 15 N -0.562 5.562 16 Si 0.787 3.213 17 H -0.214 1.214 18 H -0.220 1.220 19 H -0.205 1.205 20 C 0.026 3.974 21 C -0.206 4.206 22 C -0.010 4.010 23 O -0.284 6.284 24 C -0.288 4.288 25 C -0.171 4.171 26 C -0.172 4.172 27 C -0.360 4.360 28 S 0.345 5.655 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.065 0.935 32 H 0.247 0.753 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.040 0.960 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.052 0.948 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.055 0.945 43 H 0.107 0.893 44 H 0.178 0.822 45 H 0.182 0.818 46 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.949 5.277 -16.907 17.818 hybrid contribution -0.171 0.361 0.496 0.636 sum 1.778 5.638 -16.411 17.443 Atomic orbital electron populations 1.21857 0.90407 1.02727 1.04787 1.19868 0.98581 1.00450 0.86724 0.84152 1.21074 0.79878 0.84445 0.85315 1.90701 1.39565 1.27953 1.87174 1.45753 1.53060 1.31934 1.04713 1.21332 0.98409 0.95550 0.83740 1.21725 1.00831 0.82052 0.93123 0.89690 1.20659 0.94174 0.97307 0.85897 1.44218 1.45848 1.13120 1.29118 1.19380 1.08603 1.19417 0.91907 0.91964 1.25456 0.98219 1.02463 0.97059 1.69982 1.38365 1.35399 1.12439 0.85443 0.78392 0.78535 0.78963 1.21388 1.22025 1.20526 1.20492 0.95137 0.84795 0.97020 1.23495 1.00870 0.99281 0.96943 1.22412 0.90239 0.94882 0.93461 1.87507 1.45592 1.16983 1.78366 1.24086 1.06791 0.97012 1.00873 1.20426 0.99536 1.02684 0.94471 1.20426 1.02929 0.92868 1.00961 1.25978 1.05960 1.02504 1.01513 1.84579 1.51525 1.11552 1.17828 0.90113 0.88857 0.93479 0.75285 0.92362 0.92680 0.90482 0.95971 0.93997 0.95177 0.94796 0.92764 0.90294 0.94521 0.89268 0.82212 0.81844 0.80086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.01 71.98 0.65 -1.91 16 2 C -0.03 -0.73 3.10 -12.29 -0.04 -0.77 16 3 H 0.14 2.24 8.08 -2.39 -0.02 2.23 16 4 C 0.51 15.54 7.12 87.66 0.62 16.17 16 5 O -0.57 -22.36 15.25 -3.01 -0.05 -22.41 16 6 N -0.70 -21.41 5.29 -463.07 -2.45 -23.86 16 7 C 0.13 4.99 5.26 86.38 0.45 5.45 16 8 C 0.08 3.26 2.01 28.71 0.06 3.32 16 9 H 0.09 3.85 5.23 -2.38 -0.01 3.84 16 10 C 0.14 6.60 4.71 83.79 0.39 6.99 16 11 N -0.60 -28.73 2.61 -706.00 -1.84 -30.57 16 12 C -0.26 -13.72 9.62 84.04 0.81 -12.91 16 13 H 0.06 3.25 7.88 -2.91 -0.02 3.23 16 14 C -0.04 -1.85 4.92 84.86 0.42 -1.43 16 15 N -0.92 -48.15 9.56 21.65 0.21 -47.94 16 16 Si 0.96 43.04 29.60 68.60 2.03 45.07 16 17 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 18 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 C 0.15 6.28 5.32 87.75 0.47 6.75 16 21 C -0.16 -5.68 6.75 32.14 0.22 -5.46 16 22 C 0.07 2.31 6.38 72.73 0.46 2.77 16 23 O -0.37 -13.33 9.34 -137.17 -1.28 -14.62 16 24 C -0.17 -4.03 4.60 24.59 0.11 -3.92 16 25 C -0.14 -2.80 10.01 21.22 0.21 -2.59 16 26 C -0.14 -2.59 10.18 21.22 0.22 -2.38 16 27 C -0.22 -4.49 11.23 66.72 0.75 -3.74 16 28 S 0.08 2.06 22.18 -56.49 -1.25 0.81 16 29 H 0.08 1.31 7.56 -2.39 -0.02 1.29 16 30 H 0.09 1.30 8.14 -2.39 -0.02 1.29 16 31 H 0.05 1.02 8.00 -2.39 -0.02 1.01 16 32 H 0.41 10.66 7.61 -92.70 -0.71 9.95 16 33 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 34 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.08 3.94 6.03 -2.39 -0.01 3.92 16 36 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.25 13.04 8.31 -92.71 -0.77 12.27 16 38 H 0.03 1.22 7.96 -2.39 -0.02 1.20 16 39 H 0.03 1.35 7.99 -2.39 -0.02 1.33 16 40 H 0.05 1.89 8.14 -2.38 -0.02 1.88 16 41 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.04 1.46 6.66 -2.39 -0.02 1.45 16 43 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 45 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 46 H 0.18 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -63.20 377.87 1.45 -61.76 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: 0.28 Total: 25.42 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: 5.81 Total: 6.34 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -4.09 Total: -102.37 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -1.33 Total: -37.02 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -1.25 Total: 0.81 kcal Total: -63.20 1.45 -61.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150316127.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.048 kcal (2) G-P(sol) polarization free energy of solvation -63.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds