Wall clock time and date at job start Tue Mar 31 2020 20:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.47509 * 2 1 4 4 C 1.50698 * 109.47025 * 239.99265 * 2 1 3 5 5 O 1.21281 * 120.00499 * 240.00346 * 4 2 1 6 6 N 1.34776 * 120.00028 * 60.00637 * 4 2 1 7 7 C 1.46496 * 120.00388 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47395 * 179.97438 * 7 6 4 9 9 H 1.09008 * 109.40723 * 304.83905 * 8 7 6 10 10 C 1.54295 * 109.40841 * 185.00222 * 8 7 6 11 11 N 1.48180 * 110.69517 * 200.49089 * 10 8 7 12 12 C 1.36942 * 118.50948 * 138.76991 * 11 10 8 13 13 H 1.07996 * 120.00203 * 5.16700 * 12 11 10 14 14 C 1.38807 * 119.99871 * 185.16079 * 12 11 10 15 15 N 1.31628 * 120.00005 * 30.13108 * 14 12 11 16 16 Si 1.86794 * 120.00248 * 210.13353 * 14 12 11 17 17 H 1.48495 * 109.47686 * 94.82667 * 16 14 12 18 18 H 1.48500 * 109.47156 * 214.82810 * 16 14 12 19 19 H 1.48503 * 109.47059 * 334.82352 * 16 14 12 20 20 C 1.44456 * 122.97353 * 318.75196 * 11 10 8 21 21 C 1.54871 * 109.32904 * 88.95753 * 20 11 10 22 22 C 1.47684 * 109.67985 * 290.09857 * 21 20 11 23 23 O 1.40526 * 109.40758 * 64.59567 * 8 7 6 24 24 C 1.50701 * 109.46890 * 120.00023 * 2 1 3 25 25 C 1.33393 * 125.20132 * 239.72159 * 24 2 1 26 26 C 1.38421 * 114.92200 * 179.86116 * 25 24 2 27 27 C 1.33396 * 114.91980 * 0.42056 * 26 25 24 28 28 S 1.75882 * 125.20517 * 60.01902 * 24 2 1 29 29 H 1.09007 * 109.46715 * 60.00302 * 1 2 3 30 30 H 1.09001 * 109.47349 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47018 * 300.00455 * 1 2 3 32 32 H 0.97009 * 119.99786 * 359.97438 * 6 4 2 33 33 H 1.08999 * 109.47556 * 299.99959 * 7 6 4 34 34 H 1.09001 * 109.47168 * 60.00162 * 7 6 4 35 35 H 1.08998 * 109.22853 * 320.80647 * 10 8 7 36 36 H 1.09000 * 109.23308 * 80.17673 * 10 8 7 37 37 H 0.96991 * 120.00057 * 180.02562 * 15 14 12 38 38 H 1.09006 * 109.49378 * 208.91352 * 20 11 10 39 39 H 1.08996 * 109.49632 * 328.96819 * 20 11 10 40 40 H 1.08996 * 109.43877 * 50.16475 * 21 20 11 41 41 H 1.09003 * 109.43658 * 170.03998 * 21 20 11 42 42 H 1.08999 * 108.64853 * 181.88075 * 22 21 20 43 43 H 1.08998 * 108.64900 * 299.72560 * 22 21 20 44 44 H 1.08004 * 122.53586 * 0.02562 * 25 24 2 45 45 H 1.07996 * 122.54194 * 180.20230 * 26 25 24 46 46 H 1.07997 * 125.19797 * 179.79514 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2304 5 8 2.7295 -1.6967 -1.1191 6 7 1.7068 -0.2502 -2.4545 7 6 2.1955 -0.9405 -3.6506 8 6 1.6850 -0.2198 -4.8999 9 1 0.5983 -0.1454 -4.8565 10 6 2.0944 -1.0177 -6.1555 11 7 2.0670 -0.1522 -7.3579 12 6 3.0767 -0.2752 -8.2749 13 1 3.8230 -1.0467 -8.1561 14 6 3.1409 0.5918 -9.3570 15 7 2.6808 1.8199 -9.2445 16 14 3.8800 0.0158 -10.9728 17 1 2.7977 -0.4635 -11.8694 18 1 4.5955 1.1446 -11.6202 19 1 4.8347 -1.0918 -10.7135 20 6 1.0234 0.8150 -7.6069 21 6 1.4122 2.1669 -6.9590 22 6 1.3491 2.0499 -5.4882 23 8 2.2380 1.0710 -4.9531 24 6 2.0323 -0.7104 1.2305 25 6 2.8067 -0.1661 2.1704 26 6 3.1408 -1.0128 3.2132 27 6 2.6448 -2.2473 3.1159 28 16 1.6931 -2.3861 1.6433 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.1489 0.5384 -2.5436 33 1 3.2855 -0.9402 -3.6505 34 1 1.8325 -1.9683 -3.6508 35 1 3.1019 -1.4104 -6.0185 36 1 1.4020 -1.8480 -6.2948 37 1 2.7253 2.4257 -10.0007 38 1 0.9002 0.9487 -8.6817 39 1 0.0877 0.4598 -7.1750 40 1 2.4254 2.4345 -7.2585 41 1 0.7200 2.9407 -7.2912 42 1 1.5927 3.0181 -5.0508 43 1 0.3303 1.7881 -5.2027 44 1 3.1452 0.8584 2.1226 45 1 3.7591 -0.6988 4.0411 46 1 2.8033 -3.0401 3.8320 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150316128.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:18 Heat of formation + Delta-G solvation = -10.079554 kcal Electronic energy + Delta-G solvation = -27365.021158 eV Core-core repulsion = 23575.853072 eV Total energy + Delta-G solvation = -3789.168086 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.06565 -38.78846 -37.79466 -35.34593 -34.61558 -34.14360 -32.10757 -31.13445 -29.10164 -28.49107 -25.79915 -25.38408 -24.79004 -23.29714 -22.20768 -20.93637 -20.31545 -19.64331 -19.53096 -17.74571 -16.78133 -16.58977 -16.29668 -16.03338 -15.62589 -15.23966 -14.92427 -14.50358 -14.22102 -13.88028 -13.67663 -13.43116 -13.28668 -12.88339 -12.75131 -12.71941 -12.46704 -12.39909 -12.24584 -12.18204 -11.88968 -11.72342 -11.60097 -11.46143 -10.79283 -10.76257 -10.58165 -10.40779 -10.20100 -9.91547 -9.83569 -9.72887 -9.34855 -9.01348 -8.84559 -8.76934 -8.46533 -8.26821 -6.89994 -5.76397 -3.03358 0.86018 1.54681 1.94012 2.56512 2.62954 3.21848 3.41149 3.50069 3.50930 4.26784 4.28732 4.50466 4.59353 4.74708 4.90778 4.99652 5.11717 5.28503 5.29319 5.35843 5.37266 5.42305 5.47389 5.61155 5.69352 5.74025 5.79203 5.87728 5.94345 6.01647 6.12818 6.14266 6.32574 6.33711 6.44202 6.48825 6.64474 6.72495 6.89399 7.12034 7.49483 7.59163 7.74298 7.94322 8.19042 8.20631 8.34699 9.26801 9.87718 10.27671 11.24836 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027377 B = 0.002270 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.496811 B =12330.468481 C =12770.278567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.042 4.042 3 H 0.114 0.886 4 C 0.512 3.488 5 O -0.529 6.529 6 N -0.718 5.718 7 C 0.123 3.877 8 C 0.065 3.935 9 H 0.052 0.948 10 C 0.132 3.868 11 N -0.590 5.590 12 C -0.250 4.250 13 H 0.074 0.926 14 C -0.002 4.002 15 N -0.892 5.892 16 Si 0.890 3.110 17 H -0.290 1.290 18 H -0.295 1.295 19 H -0.281 1.281 20 C 0.182 3.818 21 C -0.161 4.161 22 C 0.074 3.926 23 O -0.360 6.360 24 C -0.155 4.155 25 C -0.140 4.140 26 C -0.136 4.136 27 C -0.226 4.226 28 S 0.139 5.861 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.400 0.600 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.028 0.972 37 H 0.250 0.750 38 H 0.082 0.918 39 H 0.000 1.000 40 H 0.113 0.887 41 H 0.044 0.956 42 H 0.062 0.938 43 H 0.023 0.977 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.980 -1.803 22.227 23.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.066 4.066 3 H 0.132 0.868 4 C 0.296 3.704 5 O -0.405 6.405 6 N -0.369 5.369 7 C -0.001 4.001 8 C 0.004 3.996 9 H 0.070 0.930 10 C 0.005 3.995 11 N -0.312 5.312 12 C -0.379 4.379 13 H 0.092 0.908 14 C -0.199 4.199 15 N -0.538 5.538 16 Si 0.721 3.279 17 H -0.218 1.218 18 H -0.222 1.222 19 H -0.206 1.206 20 C 0.055 3.945 21 C -0.201 4.201 22 C -0.002 4.002 23 O -0.278 6.278 24 C -0.273 4.273 25 C -0.171 4.171 26 C -0.167 4.167 27 C -0.362 4.362 28 S 0.404 5.596 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.234 0.766 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.045 0.955 37 H 0.061 0.939 38 H 0.100 0.900 39 H 0.018 0.982 40 H 0.132 0.868 41 H 0.062 0.938 42 H 0.080 0.920 43 H 0.041 0.959 44 H 0.155 0.845 45 H 0.154 0.846 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.119 -3.560 21.572 22.993 hybrid contribution 0.850 1.442 -0.332 1.707 sum -6.269 -2.118 21.240 22.246 Atomic orbital electron populations 1.21854 0.91718 1.03216 1.03336 1.19833 0.97598 1.00022 0.89104 0.86806 1.20376 0.80676 0.84911 0.84429 1.90742 1.37231 1.26036 1.86539 1.45914 1.53491 1.32057 1.05441 1.21614 1.00591 0.95585 0.82290 1.22808 0.96400 0.85926 0.94420 0.92981 1.21818 0.99763 0.92461 0.85485 1.44095 1.25685 1.42143 1.19309 1.19363 1.06329 1.11833 1.00387 0.90786 1.24651 1.00797 0.94939 0.99511 1.70307 1.51300 1.02996 1.29178 0.86419 0.78282 0.78024 0.85211 1.21753 1.22172 1.20649 1.20698 0.86498 0.86636 1.00628 1.22203 1.06032 0.99730 0.92135 1.21634 0.90679 0.90638 0.97250 1.87446 1.41840 1.16124 1.82374 1.23916 1.05688 0.97675 1.00063 1.20066 1.00533 1.01611 0.94871 1.20065 1.03058 0.93202 1.00398 1.25695 1.06671 1.01479 1.02357 1.84282 1.49750 1.09554 1.16050 0.91181 0.91804 0.90862 0.76562 0.90502 0.90416 0.92302 0.95458 0.93947 0.89998 0.98155 0.86850 0.93761 0.91982 0.95900 0.84492 0.84558 0.82154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.01 37.16 0.33 -0.75 16 2 C -0.04 -0.42 3.10 -92.92 -0.29 -0.70 16 3 H 0.11 0.92 8.08 -51.93 -0.42 0.50 16 4 C 0.51 6.75 7.12 -10.99 -0.08 6.67 16 5 O -0.53 -8.95 15.25 5.56 0.08 -8.86 16 6 N -0.72 -9.00 5.38 -60.30 -0.32 -9.33 16 7 C 0.12 1.82 5.24 -4.04 -0.02 1.80 16 8 C 0.07 1.09 2.35 -26.05 -0.06 1.03 16 9 H 0.05 0.81 7.20 -51.92 -0.37 0.43 16 10 C 0.13 2.63 6.12 -2.44 -0.01 2.61 16 11 N -0.59 -14.26 2.61 -171.49 -0.45 -14.71 16 12 C -0.25 -6.72 9.55 -15.06 -0.14 -6.87 16 13 H 0.07 1.99 7.87 -52.49 -0.41 1.58 16 14 C 0.00 -0.05 4.72 -17.43 -0.08 -0.13 16 15 N -0.89 -24.36 8.38 55.49 0.46 -23.90 16 16 Si 0.89 21.44 29.65 -169.99 -5.04 16.40 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 C 0.18 4.20 4.98 -4.15 -0.02 4.18 16 21 C -0.16 -3.47 5.15 -28.31 -0.15 -3.62 16 22 C 0.07 1.33 6.04 34.59 0.21 1.54 16 23 O -0.36 -6.87 9.77 -34.10 -0.33 -7.20 16 24 C -0.16 -1.70 4.60 -36.00 -0.17 -1.87 16 25 C -0.14 -1.41 10.01 -41.21 -0.41 -1.83 16 26 C -0.14 -1.28 10.18 -41.21 -0.42 -1.70 16 27 C -0.23 -2.16 11.23 29.04 0.33 -1.83 16 28 S 0.14 1.53 22.18 -107.50 -2.38 -0.85 16 29 H 0.07 0.44 7.56 -51.92 -0.39 0.05 16 30 H 0.06 0.53 8.00 -51.93 -0.42 0.11 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.40 4.21 7.87 -40.82 -0.32 3.89 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 1.20 7.67 -51.93 -0.40 0.80 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 38 H 0.08 2.13 5.96 -51.93 -0.31 1.82 16 39 H 0.00 0.01 8.10 -51.93 -0.42 -0.42 16 40 H 0.11 2.95 6.29 -51.93 -0.33 2.62 16 41 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.02 0.36 7.27 -51.93 -0.38 -0.02 16 44 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 45 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 46 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 377.19 15.07 5.68 5.68 Total: -1.00 -31.18 377.19 -10.39 -41.57 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -7.11 Total: 2.67 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -0.98 Total: -1.47 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: -0.31 Total: -47.94 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.25 Total: -16.06 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.04 Total: 16.40 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.38 Total: -0.85 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.18 -10.39 -41.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150316128.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.488 kcal (2) G-P(sol) polarization free energy of solvation -31.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds