Wall clock time and date at job start Tue Mar 31 2020 20:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.47509 * 2 1 4 4 C 1.50698 * 109.47025 * 239.99265 * 2 1 3 5 5 O 1.21281 * 120.00499 * 240.00346 * 4 2 1 6 6 N 1.34776 * 120.00028 * 60.00637 * 4 2 1 7 7 C 1.46496 * 120.00388 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47395 * 179.97438 * 7 6 4 9 9 H 1.09008 * 109.40723 * 304.83905 * 8 7 6 10 10 C 1.54295 * 109.40841 * 185.00222 * 8 7 6 11 11 N 1.48180 * 110.69517 * 200.49089 * 10 8 7 12 12 C 1.36942 * 118.50948 * 138.76991 * 11 10 8 13 13 H 1.07996 * 120.00203 * 5.16700 * 12 11 10 14 14 C 1.38807 * 119.99871 * 185.16079 * 12 11 10 15 15 N 1.31628 * 120.00005 * 30.13108 * 14 12 11 16 16 Si 1.86794 * 120.00248 * 210.13353 * 14 12 11 17 17 H 1.48495 * 109.47686 * 94.82667 * 16 14 12 18 18 H 1.48500 * 109.47156 * 214.82810 * 16 14 12 19 19 H 1.48503 * 109.47059 * 334.82352 * 16 14 12 20 20 C 1.44456 * 122.97353 * 318.75196 * 11 10 8 21 21 C 1.54871 * 109.32904 * 88.95753 * 20 11 10 22 22 C 1.47684 * 109.67985 * 290.09857 * 21 20 11 23 23 O 1.40526 * 109.40758 * 64.59567 * 8 7 6 24 24 C 1.50701 * 109.46890 * 120.00023 * 2 1 3 25 25 C 1.33393 * 125.20132 * 239.72159 * 24 2 1 26 26 C 1.38421 * 114.92200 * 179.86116 * 25 24 2 27 27 C 1.33396 * 114.91980 * 0.42056 * 26 25 24 28 28 S 1.75882 * 125.20517 * 60.01902 * 24 2 1 29 29 H 1.09007 * 109.46715 * 60.00302 * 1 2 3 30 30 H 1.09001 * 109.47349 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47018 * 300.00455 * 1 2 3 32 32 H 0.97009 * 119.99786 * 359.97438 * 6 4 2 33 33 H 1.08999 * 109.47556 * 299.99959 * 7 6 4 34 34 H 1.09001 * 109.47168 * 60.00162 * 7 6 4 35 35 H 1.08998 * 109.22853 * 320.80647 * 10 8 7 36 36 H 1.09000 * 109.23308 * 80.17673 * 10 8 7 37 37 H 0.96991 * 120.00057 * 180.02562 * 15 14 12 38 38 H 1.09006 * 109.49378 * 208.91352 * 20 11 10 39 39 H 1.08996 * 109.49632 * 328.96819 * 20 11 10 40 40 H 1.08996 * 109.43877 * 50.16475 * 21 20 11 41 41 H 1.09003 * 109.43658 * 170.03998 * 21 20 11 42 42 H 1.08999 * 108.64853 * 181.88075 * 22 21 20 43 43 H 1.08998 * 108.64900 * 299.72560 * 22 21 20 44 44 H 1.08004 * 122.53586 * 0.02562 * 25 24 2 45 45 H 1.07996 * 122.54194 * 180.20230 * 26 25 24 46 46 H 1.07997 * 125.19797 * 179.79514 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2304 5 8 2.7295 -1.6967 -1.1191 6 7 1.7068 -0.2502 -2.4545 7 6 2.1955 -0.9405 -3.6506 8 6 1.6850 -0.2198 -4.8999 9 1 0.5983 -0.1454 -4.8565 10 6 2.0944 -1.0177 -6.1555 11 7 2.0670 -0.1522 -7.3579 12 6 3.0767 -0.2752 -8.2749 13 1 3.8230 -1.0467 -8.1561 14 6 3.1409 0.5918 -9.3570 15 7 2.6808 1.8199 -9.2445 16 14 3.8800 0.0158 -10.9728 17 1 2.7977 -0.4635 -11.8694 18 1 4.5955 1.1446 -11.6202 19 1 4.8347 -1.0918 -10.7135 20 6 1.0234 0.8150 -7.6069 21 6 1.4122 2.1669 -6.9590 22 6 1.3491 2.0499 -5.4882 23 8 2.2380 1.0710 -4.9531 24 6 2.0323 -0.7104 1.2305 25 6 2.8067 -0.1661 2.1704 26 6 3.1408 -1.0128 3.2132 27 6 2.6448 -2.2473 3.1159 28 16 1.6931 -2.3861 1.6433 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.1489 0.5384 -2.5436 33 1 3.2855 -0.9402 -3.6505 34 1 1.8325 -1.9683 -3.6508 35 1 3.1019 -1.4104 -6.0185 36 1 1.4020 -1.8480 -6.2948 37 1 2.7253 2.4257 -10.0007 38 1 0.9002 0.9487 -8.6817 39 1 0.0877 0.4598 -7.1750 40 1 2.4254 2.4345 -7.2585 41 1 0.7200 2.9407 -7.2912 42 1 1.5927 3.0181 -5.0508 43 1 0.3303 1.7881 -5.2027 44 1 3.1452 0.8584 2.1226 45 1 3.7591 -0.6988 4.0411 46 1 2.8033 -3.0401 3.8320 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150316128.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:17 Heat of formation + Delta-G solvation = -29.107564 kcal Electronic energy + Delta-G solvation = -27365.846274 eV Core-core repulsion = 23575.853072 eV Total energy + Delta-G solvation = -3789.993202 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.13361 -40.20125 -38.58251 -37.05128 -35.88833 -34.95551 -33.57695 -33.03120 -30.43616 -29.38892 -27.20078 -27.09959 -25.66522 -24.45969 -23.46160 -22.36435 -21.67471 -21.03445 -20.25012 -18.80371 -18.43718 -17.77212 -17.63741 -17.21577 -16.57755 -16.48059 -16.25373 -16.04070 -15.55184 -15.33657 -14.89218 -14.58404 -14.34993 -14.24669 -13.96244 -13.81109 -13.61351 -13.54305 -13.39413 -13.23926 -13.15809 -13.04212 -12.69509 -12.57006 -12.41330 -12.33847 -12.08893 -11.90081 -11.77613 -11.51968 -11.38675 -11.11052 -10.89190 -10.40773 -10.18701 -10.10665 -9.55253 -9.26692 -8.80461 -7.79195 -5.06846 0.11366 0.79898 1.20087 1.46516 1.50801 1.57343 1.61980 1.83392 2.23370 2.55415 2.93901 3.23903 3.52739 3.58415 3.77852 4.05168 4.07770 4.13086 4.25185 4.28140 4.32525 4.38561 4.56447 4.60888 4.66205 4.71993 4.72695 4.80092 4.83322 4.84292 4.88420 5.05230 5.08234 5.19935 5.24392 5.24687 5.38032 5.41582 5.45354 5.63100 5.63194 5.77098 6.24621 6.35014 6.53266 6.63864 7.22378 7.25891 7.97944 8.29105 9.18481 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027377 B = 0.002270 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.496811 B =12330.468481 C =12770.278567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.036 4.036 3 H 0.137 0.863 4 C 0.509 3.491 5 O -0.571 6.571 6 N -0.708 5.708 7 C 0.135 3.865 8 C 0.078 3.922 9 H 0.077 0.923 10 C 0.124 3.876 11 N -0.606 5.606 12 C -0.264 4.264 13 H 0.064 0.936 14 C -0.045 4.045 15 N -0.905 5.905 16 Si 0.945 3.055 17 H -0.290 1.290 18 H -0.299 1.299 19 H -0.279 1.279 20 C 0.182 3.818 21 C -0.150 4.150 22 C 0.073 3.927 23 O -0.378 6.378 24 C -0.170 4.170 25 C -0.145 4.145 26 C -0.144 4.144 27 C -0.226 4.226 28 S 0.093 5.907 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.088 0.912 32 H 0.413 0.587 33 H 0.052 0.948 34 H 0.085 0.915 35 H 0.044 0.956 36 H 0.045 0.955 37 H 0.245 0.755 38 H 0.046 0.954 39 H 0.026 0.974 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.156 0.844 45 H 0.160 0.840 46 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.133 -1.118 24.162 25.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.059 4.059 3 H 0.154 0.846 4 C 0.296 3.704 5 O -0.450 6.450 6 N -0.360 5.360 7 C 0.010 3.990 8 C 0.017 3.983 9 H 0.095 0.905 10 C -0.002 4.002 11 N -0.329 5.329 12 C -0.394 4.394 13 H 0.082 0.918 14 C -0.241 4.241 15 N -0.552 5.552 16 Si 0.775 3.225 17 H -0.218 1.218 18 H -0.227 1.227 19 H -0.204 1.204 20 C 0.056 3.944 21 C -0.190 4.190 22 C -0.003 4.003 23 O -0.296 6.296 24 C -0.288 4.288 25 C -0.175 4.175 26 C -0.174 4.174 27 C -0.361 4.361 28 S 0.357 5.643 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.250 0.750 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.044 0.956 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.076 0.924 44 H 0.174 0.826 45 H 0.178 0.822 46 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -8.296 -2.864 23.528 25.111 hybrid contribution 1.240 1.195 -0.900 1.943 sum -7.056 -1.669 22.628 23.761 Atomic orbital electron populations 1.21868 0.89870 1.03016 1.04952 1.19891 0.99017 1.00269 0.86697 0.84578 1.21006 0.79758 0.84390 0.85262 1.90727 1.39155 1.28007 1.87140 1.45765 1.53339 1.32264 1.04633 1.21306 0.99100 0.95969 0.82604 1.22663 0.97582 0.84689 0.93343 0.90524 1.21995 0.99655 0.92776 0.85754 1.44240 1.25151 1.42874 1.20607 1.19516 1.06755 1.11410 1.01687 0.91760 1.25226 1.02161 0.95184 1.01537 1.70477 1.52339 1.03290 1.29069 0.85566 0.77502 0.77255 0.82131 1.21764 1.22669 1.20393 1.20607 0.87317 0.87541 0.98917 1.21970 1.03261 0.98959 0.94840 1.21625 0.92451 0.91563 0.94626 1.87449 1.43088 1.17019 1.82081 1.24124 1.06554 0.97263 1.00903 1.20419 0.99763 1.02642 0.94699 1.20410 1.03043 0.93002 1.00939 1.25983 1.06043 1.02321 1.01776 1.84404 1.51062 1.11003 1.17784 0.89496 0.92933 0.89299 0.75003 0.92959 0.89703 0.93731 0.93764 0.94547 0.93578 0.95569 0.91589 0.92839 0.90041 0.92395 0.82608 0.82214 0.80156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.01 71.98 0.65 -1.07 16 2 C -0.04 -0.62 3.10 -12.29 -0.04 -0.66 16 3 H 0.14 1.74 8.08 -2.39 -0.02 1.72 16 4 C 0.51 12.66 7.12 87.66 0.62 13.28 16 5 O -0.57 -19.14 15.25 -3.03 -0.05 -19.19 16 6 N -0.71 -16.15 5.38 -463.07 -2.49 -18.64 16 7 C 0.13 3.80 5.24 86.38 0.45 4.25 16 8 C 0.08 2.43 2.35 31.03 0.07 2.50 16 9 H 0.08 2.06 7.20 -2.38 -0.02 2.04 16 10 C 0.12 4.85 6.12 86.50 0.53 5.38 16 11 N -0.61 -29.24 2.61 -696.48 -1.82 -31.05 16 12 C -0.26 -14.42 9.55 84.03 0.80 -13.62 16 13 H 0.06 3.54 7.87 -2.91 -0.02 3.52 16 14 C -0.05 -2.50 4.72 84.86 0.40 -2.10 16 15 N -0.91 -50.53 8.38 21.65 0.18 -50.35 16 16 Si 0.95 44.96 29.65 68.60 2.03 46.99 16 17 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 18 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 19 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 20 C 0.18 8.31 4.98 87.40 0.44 8.75 16 21 C -0.15 -6.34 5.15 29.57 0.15 -6.19 16 22 C 0.07 2.42 6.04 70.32 0.42 2.85 16 23 O -0.38 -13.68 9.77 -144.92 -1.42 -15.09 16 24 C -0.17 -3.48 4.60 24.59 0.11 -3.37 16 25 C -0.14 -2.61 10.01 21.22 0.21 -2.40 16 26 C -0.14 -2.40 10.18 21.22 0.22 -2.19 16 27 C -0.23 -4.00 11.23 66.72 0.75 -3.25 16 28 S 0.09 2.01 22.18 -56.49 -1.25 0.76 16 29 H 0.09 0.77 7.56 -2.38 -0.02 0.75 16 30 H 0.05 0.78 8.00 -2.39 -0.02 0.76 16 31 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.41 7.25 7.87 -92.70 -0.73 6.52 16 33 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.04 1.83 7.67 -2.39 -0.02 1.81 16 36 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.24 13.41 8.31 -92.71 -0.77 12.64 16 38 H 0.05 2.42 5.96 -2.38 -0.01 2.40 16 39 H 0.03 1.04 8.10 -2.39 -0.02 1.02 16 40 H 0.07 3.47 6.29 -2.39 -0.02 3.45 16 41 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.06 1.54 7.27 -2.39 -0.02 1.52 16 44 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 45 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 46 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -69.39 377.19 1.24 -68.15 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.25 Total: 16.23 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 5.80 Total: 2.19 kcal Atomic # 7 Polarization: -95.92 SS G_CDS: -4.13 Total: -100.04 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -1.46 Total: -34.28 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -1.25 Total: 0.76 kcal Total: -69.39 1.24 -68.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150316128.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.047 kcal (2) G-P(sol) polarization free energy of solvation -69.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds