Wall clock time and date at job start Tue Mar 31 2020 20:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08999 * 109.46889 * 2 1 4 4 C 1.50693 * 109.47464 * 239.99518 * 2 1 3 5 5 O 1.21274 * 120.00366 * 239.99955 * 4 2 1 6 6 N 1.34785 * 119.99706 * 60.00256 * 4 2 1 7 7 C 1.46498 * 119.99663 * 179.97438 * 6 4 2 8 8 C 1.53006 * 109.46791 * 180.02562 * 7 6 4 9 9 H 1.08999 * 108.45350 * 57.87439 * 8 7 6 10 10 C 1.46919 * 108.61886 * 175.75769 * 8 7 6 11 11 N 1.49896 * 106.62338 * 177.93437 * 10 8 7 12 12 C 1.36937 * 120.49372 * 111.40039 * 11 10 8 13 13 H 1.08001 * 120.00051 * 155.30993 * 12 11 10 14 14 C 1.38811 * 120.00022 * 335.30609 * 12 11 10 15 15 N 1.31614 * 120.00004 * 340.86507 * 14 12 11 16 16 Si 1.86799 * 119.99944 * 160.86761 * 14 12 11 17 17 H 1.48504 * 109.47185 * 90.00319 * 16 14 12 18 18 H 1.48499 * 109.47251 * 209.99595 * 16 14 12 19 19 H 1.48495 * 109.47289 * 330.00004 * 16 14 12 20 20 C 1.43428 * 118.87357 * 291.09372 * 11 10 8 21 21 C 1.55323 * 116.08867 * 89.55027 * 20 11 10 22 22 C 1.55192 * 108.87677 * 319.57310 * 21 20 11 23 23 O 1.39640 * 110.56596 * 322.14578 * 22 21 20 24 24 C 1.50704 * 109.46697 * 119.99452 * 2 1 3 25 25 C 1.38424 * 122.54141 * 240.00215 * 24 2 1 26 26 C 1.33391 * 114.91782 * 179.97438 * 25 24 2 27 27 S 1.75880 * 109.59753 * 359.97438 * 26 25 24 28 28 C 1.33393 * 122.53718 * 59.71603 * 24 2 1 29 29 H 1.08996 * 109.47498 * 300.00286 * 1 2 3 30 30 H 1.09006 * 109.46417 * 60.00428 * 1 2 3 31 31 H 1.08999 * 109.46889 * 180.02562 * 1 2 3 32 32 H 0.97001 * 120.00066 * 359.97438 * 6 4 2 33 33 H 1.08997 * 109.47145 * 60.00471 * 7 6 4 34 34 H 1.08994 * 109.47171 * 299.99835 * 7 6 4 35 35 H 1.09003 * 109.98705 * 297.23377 * 10 8 7 36 36 H 1.08999 * 109.99256 * 58.60484 * 10 8 7 37 37 H 0.97005 * 120.00063 * 179.97438 * 15 14 12 38 38 H 1.09005 * 108.11937 * 327.90086 * 20 11 10 39 39 H 1.09000 * 108.12953 * 211.21042 * 20 11 10 40 40 H 1.08999 * 109.56721 * 79.38848 * 21 20 11 41 41 H 1.08994 * 109.57265 * 199.75347 * 21 20 11 42 42 H 1.09000 * 109.25615 * 82.41831 * 22 21 20 43 43 H 1.08996 * 109.26096 * 201.86199 * 22 21 20 44 44 H 1.07993 * 122.53815 * 0.02562 * 25 24 2 45 45 H 1.07996 * 125.19575 * 180.02562 * 26 25 24 46 46 H 1.08000 * 125.20228 * 0.02562 * 28 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7105 -1.2303 5 8 2.7298 -1.6965 -1.1190 6 7 1.7069 -0.2500 -2.4545 7 6 2.1958 -0.9404 -3.6506 8 6 1.6863 -0.2188 -4.8999 9 1 2.0270 0.8159 -4.8638 10 6 2.2691 -0.8636 -6.0845 11 7 1.7026 -0.1576 -7.2793 12 6 2.5032 0.6237 -8.0690 13 1 2.2368 0.8007 -9.1005 14 6 3.6573 1.1885 -7.5436 15 7 3.7999 1.3020 -6.2401 16 14 5.0079 1.7875 -8.6866 17 1 4.7672 3.2111 -9.0340 18 1 6.3230 1.6590 -8.0090 19 1 5.0073 0.9687 -9.9254 20 6 0.3106 -0.3202 -7.5842 21 6 -0.6569 0.7002 -6.9244 22 6 -0.1996 0.9532 -5.4631 23 8 0.2626 -0.2295 -4.8821 24 6 2.0323 -0.7103 1.2306 25 6 2.8306 -0.0888 2.1754 26 6 3.1873 -0.8593 3.2042 27 16 2.4968 -2.4647 3.0062 28 6 1.7368 -1.9840 1.4946 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.1490 0.5384 -2.5436 33 1 1.8328 -1.9681 -3.6508 34 1 3.2858 -0.9399 -3.6504 35 1 3.3541 -0.7603 -6.0690 36 1 1.9943 -1.9181 -6.1079 37 1 4.6066 1.6963 -5.8730 38 1 0.0103 -1.3213 -7.2746 39 1 0.1899 -0.2517 -8.6654 40 1 -0.6347 1.6370 -7.4812 41 1 -1.6694 0.2967 -6.9255 42 1 0.6015 1.6922 -5.4600 43 1 -1.0410 1.3334 -4.8838 44 1 3.1403 0.9419 2.0868 45 1 3.8050 -0.5450 4.0325 46 1 1.1255 -2.6228 0.8744 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150318315.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:37 Heat of formation + Delta-G solvation = -18.679181 kcal Electronic energy + Delta-G solvation = -27865.545152 eV Core-core repulsion = 24076.004158 eV Total energy + Delta-G solvation = -3789.540994 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.06784 -38.99360 -37.65570 -35.03535 -34.47437 -33.27211 -32.05999 -31.08853 -28.96753 -28.45401 -25.81716 -25.35858 -25.11793 -23.17046 -22.22277 -20.79975 -19.99479 -19.60315 -18.66565 -17.83572 -17.17292 -16.76820 -16.06120 -15.68444 -15.01949 -14.94794 -14.82416 -14.40514 -14.12884 -13.87604 -13.72505 -13.26362 -13.17985 -13.00342 -12.78131 -12.55326 -12.43378 -12.32422 -12.16628 -11.96442 -11.70240 -11.49047 -11.39791 -11.21294 -10.86436 -10.76654 -10.73515 -10.51259 -10.17621 -9.98899 -9.71178 -9.54429 -9.47502 -8.82035 -8.79302 -8.64120 -8.52344 -8.41803 -6.83396 -5.94282 -3.32949 1.00338 1.62806 1.94228 2.61736 2.92210 3.31219 3.39872 3.42354 3.60791 4.41912 4.62369 4.67782 4.80366 4.99015 5.13314 5.20652 5.22967 5.26866 5.30964 5.55180 5.63335 5.65863 5.72249 5.80269 5.90561 5.97386 5.98849 6.01343 6.13768 6.31443 6.33405 6.40253 6.44854 6.46811 6.57666 6.65540 6.69665 6.80136 6.92090 6.95228 7.10954 7.31124 7.70086 7.85314 8.12385 8.30622 8.53279 9.05478 9.73558 10.27488 11.14757 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017217 B = 0.002720 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.871150 B =10292.832754 C =11210.205298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.052 4.052 3 H 0.103 0.897 4 C 0.513 3.487 5 O -0.540 6.540 6 N -0.712 5.712 7 C 0.122 3.878 8 C 0.061 3.939 9 H 0.107 0.893 10 C 0.144 3.856 11 N -0.588 5.588 12 C -0.249 4.249 13 H 0.069 0.931 14 C 0.002 3.998 15 N -0.907 5.907 16 Si 0.903 3.097 17 H -0.288 1.288 18 H -0.289 1.289 19 H -0.280 1.280 20 C 0.161 3.839 21 C -0.172 4.172 22 C 0.068 3.932 23 O -0.370 6.370 24 C -0.090 4.090 25 C -0.123 4.123 26 C -0.219 4.219 27 S 0.084 5.916 28 C -0.171 4.171 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.399 0.601 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.019 0.981 37 H 0.255 0.745 38 H 0.031 0.969 39 H 0.033 0.967 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.063 0.937 43 H 0.050 0.950 44 H 0.139 0.861 45 H 0.162 0.838 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.465 -1.152 15.903 17.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.076 4.076 3 H 0.121 0.879 4 C 0.297 3.703 5 O -0.417 6.417 6 N -0.363 5.363 7 C -0.002 4.002 8 C 0.002 3.998 9 H 0.125 0.875 10 C 0.019 3.981 11 N -0.308 5.308 12 C -0.378 4.378 13 H 0.086 0.914 14 C -0.195 4.195 15 N -0.553 5.553 16 Si 0.733 3.267 17 H -0.215 1.215 18 H -0.215 1.215 19 H -0.206 1.206 20 C 0.032 3.968 21 C -0.213 4.213 22 C -0.010 4.010 23 O -0.288 6.288 24 C -0.102 4.102 25 C -0.153 4.153 26 C -0.354 4.354 27 S 0.347 5.653 28 C -0.307 4.307 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.233 0.767 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.121 0.879 36 H 0.037 0.963 37 H 0.065 0.935 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.157 0.843 45 H 0.179 0.821 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -5.852 -3.333 16.953 18.242 hybrid contribution 0.582 2.375 -1.563 2.902 sum -5.270 -0.958 15.390 16.295 Atomic orbital electron populations 1.21786 0.92046 1.02988 1.02822 1.19997 0.97447 0.99971 0.90177 0.87862 1.20377 0.80556 0.84838 0.84495 1.90693 1.37894 1.26404 1.86711 1.45912 1.52954 1.31934 1.05476 1.21687 0.99220 0.96150 0.83186 1.22202 0.80104 1.03849 0.93642 0.87502 1.20703 1.00761 0.91631 0.85028 1.44039 1.02753 1.53623 1.30414 1.19247 1.03142 1.23290 0.92156 0.91370 1.24895 1.00338 0.98649 0.95654 1.69858 1.27636 1.47797 1.09976 0.86281 0.81681 0.78442 0.80274 1.21533 1.21516 1.20583 1.20369 0.84544 0.95301 0.96564 1.23580 0.99111 1.01412 0.97217 1.22336 0.98275 0.87553 0.92869 1.87513 1.21086 1.40425 1.79781 1.18355 1.00894 0.94168 0.96766 1.20047 0.99856 1.01320 0.94108 1.25461 1.08683 0.96772 1.04528 1.84171 1.47868 1.13381 1.19857 1.25340 1.06389 0.99005 0.99922 0.91416 0.91429 0.91986 0.76658 0.92129 0.90502 0.87855 0.96334 0.93474 0.95029 0.94894 0.92507 0.93204 0.91917 0.93142 0.84332 0.82054 0.82159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.92 37.16 0.33 -0.99 16 2 C -0.05 -0.60 2.97 -92.92 -0.28 -0.88 16 3 H 0.10 1.03 8.03 -51.93 -0.42 0.61 16 4 C 0.51 7.94 7.06 -10.99 -0.08 7.87 16 5 O -0.54 -10.36 15.24 5.56 0.08 -10.27 16 6 N -0.71 -11.05 5.32 -60.30 -0.32 -11.37 16 7 C 0.12 2.22 5.24 -4.04 -0.02 2.20 16 8 C 0.06 1.21 1.94 -29.64 -0.06 1.15 16 9 H 0.11 2.39 5.21 -51.93 -0.27 2.12 16 10 C 0.14 3.22 4.71 -5.06 -0.02 3.20 16 11 N -0.59 -13.94 2.59 -174.70 -0.45 -14.39 16 12 C -0.25 -6.42 9.61 -15.06 -0.14 -6.57 16 13 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 14 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 15 N -0.91 -23.41 9.54 55.49 0.53 -22.88 16 16 Si 0.90 20.72 29.59 -169.99 -5.03 15.69 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 C 0.16 3.36 5.34 -4.43 -0.02 3.34 16 21 C -0.17 -3.15 6.75 -24.34 -0.16 -3.31 16 22 C 0.07 1.22 6.37 38.32 0.24 1.47 16 23 O -0.37 -7.03 9.54 -31.94 -0.30 -7.33 16 24 C -0.09 -1.10 4.28 -106.25 -0.45 -1.55 16 25 C -0.12 -1.34 9.92 -41.21 -0.41 -1.75 16 26 C -0.22 -2.22 11.23 29.04 0.33 -1.89 16 27 S 0.08 0.90 23.34 -107.50 -2.51 -1.61 16 28 C -0.17 -2.12 9.27 29.04 0.27 -1.86 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.60 7.56 -51.93 -0.39 0.21 16 31 H 0.06 0.62 7.73 -51.93 -0.40 0.22 16 32 H 0.40 5.51 7.74 -40.82 -0.32 5.19 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.10 2.55 6.03 -51.93 -0.31 2.24 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 38 H 0.03 0.64 7.99 -51.93 -0.41 0.23 16 39 H 0.03 0.68 7.96 -51.93 -0.41 0.26 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.06 1.28 6.66 -51.93 -0.35 0.94 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 45 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 46 H 0.16 1.98 7.93 -52.49 -0.42 1.57 16 LS Contribution 377.15 15.07 5.68 5.68 Total: -1.00 -28.76 377.15 -9.94 -38.70 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -7.05 Total: 7.39 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -0.57 Total: 0.39 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: -0.24 Total: -48.64 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.22 Total: -17.61 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.51 Total: -1.61 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.76 -9.94 -38.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150318315.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.023 kcal (2) G-P(sol) polarization free energy of solvation -28.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds