Wall clock time and date at job start Tue Mar 31 2020 21:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35905 * 116.99763 * 2 1 4 4 C 1.38745 * 120.05677 * 0.02562 * 3 2 1 5 5 C 1.38120 * 119.94634 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.05501 * 359.97438 * 5 4 3 7 7 C 1.38241 * 120.11227 * 359.74597 * 6 5 4 8 8 C 1.38165 * 120.05359 * 0.50906 * 7 6 5 9 9 C 1.50703 * 120.03079 * 179.76364 * 8 7 6 10 10 H 1.09002 * 109.47380 * 144.72323 * 9 8 7 11 11 C 1.53002 * 109.47423 * 264.72843 * 9 8 7 12 12 N 1.46497 * 109.46857 * 174.99782 * 11 9 8 13 13 C 1.34779 * 119.99904 * 179.97438 * 12 11 9 14 14 O 1.21283 * 119.99840 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00429 * 179.97438 * 13 12 11 16 16 H 1.09001 * 109.46613 * 325.00128 * 15 13 12 17 17 C 1.53006 * 109.47239 * 84.99736 * 15 13 12 18 18 S 1.81391 * 109.47387 * 205.00109 * 15 13 12 19 19 C 1.81402 * 103.00320 * 175.00148 * 18 15 13 20 20 N 1.46504 * 109.46587 * 24.72684 * 9 8 7 21 21 C 1.36938 * 119.99848 * 85.00079 * 20 9 8 22 22 H 1.07997 * 120.00299 * 359.97438 * 21 20 9 23 23 C 1.38818 * 119.99841 * 179.97438 * 21 20 9 24 24 N 1.31621 * 120.00037 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00161 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47007 * 90.00097 * 25 23 21 27 27 H 1.48494 * 109.47637 * 210.00372 * 25 23 21 28 28 H 1.48509 * 109.47270 * 330.00651 * 25 23 21 29 29 H 1.09000 * 109.47251 * 299.99563 * 1 2 3 30 30 H 1.08992 * 109.47389 * 60.00333 * 1 2 3 31 31 H 1.09000 * 109.46958 * 179.97438 * 1 2 3 32 32 H 1.08007 * 120.03124 * 359.95552 * 4 3 2 33 33 H 1.07999 * 119.97326 * 179.97438 * 5 4 3 34 34 H 1.08002 * 119.94295 * 180.02562 * 6 5 4 35 35 H 1.08005 * 119.97585 * 180.25217 * 7 6 5 36 36 H 1.08991 * 109.46961 * 54.99661 * 11 9 8 37 37 H 1.09000 * 109.46564 * 294.99477 * 11 9 8 38 38 H 0.96995 * 120.00485 * 359.97438 * 12 11 9 39 39 H 1.09001 * 109.47002 * 60.00070 * 17 15 13 40 40 H 1.08993 * 109.46955 * 180.02562 * 17 15 13 41 41 H 1.09000 * 109.47050 * 300.00336 * 17 15 13 42 42 H 1.09007 * 109.46730 * 300.00160 * 19 18 15 43 43 H 1.09003 * 109.46946 * 59.99556 * 19 18 15 44 44 H 1.08997 * 109.47387 * 180.02562 * 19 18 15 45 45 H 0.97000 * 120.00154 * 264.99359 * 20 9 8 46 46 H 0.96994 * 119.99926 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9207 3.6047 0.0011 6 6 3.3018 3.6758 0.0016 7 6 4.0559 2.5172 0.0069 8 6 3.4311 1.2849 0.0011 9 6 4.2537 0.0222 0.0015 10 1 3.7465 -0.7417 0.5908 11 6 4.4274 -0.4739 -1.4354 12 7 5.3247 -1.6318 -1.4471 13 6 5.6249 -2.2400 -2.6118 14 8 5.1517 -1.8290 -3.6501 15 6 6.5484 -3.4307 -2.6240 16 1 7.3148 -3.3039 -1.8593 17 6 5.7462 -4.7014 -2.3363 18 16 7.3359 -3.5685 -4.2522 19 6 8.5032 -4.9387 -4.0264 20 7 5.5689 0.2966 0.5857 21 6 5.7378 0.2510 1.9439 22 1 4.9014 0.0132 2.5844 23 6 6.9841 0.5104 2.4974 24 7 8.0034 0.8007 1.7169 25 14 7.2143 0.4490 4.3501 26 1 7.5962 -0.9275 4.7560 27 1 8.2855 1.3974 4.7476 28 1 5.9441 0.8279 5.0197 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2127 2.3204 0.0002 33 1 1.3338 4.5113 0.0011 34 1 3.7920 4.6382 0.0024 35 1 5.1343 2.5754 0.0114 36 1 4.8536 0.3223 -2.0456 37 1 3.4571 -0.7620 -1.8400 38 1 5.7029 -1.9607 -0.6167 39 1 4.9798 -4.8282 -3.1009 40 1 6.4142 -5.5626 -2.3447 41 1 5.2730 -4.6186 -1.3578 42 1 9.2123 -4.6857 -3.2381 43 1 7.9564 -5.8396 -3.7478 44 1 9.0425 -5.1137 -4.9573 45 1 6.3201 0.5104 0.0105 46 1 8.8741 0.9823 2.1037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198555299.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:38 Heat of formation + Delta-G solvation = -34.569015 kcal Electronic energy + Delta-G solvation = -27423.799841 eV Core-core repulsion = 23633.569813 eV Total energy + Delta-G solvation = -3790.230029 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.98735 -39.33018 -37.22729 -35.85002 -33.70463 -33.09702 -31.90889 -29.74921 -29.68741 -28.89365 -27.61947 -26.97113 -24.75622 -23.54661 -22.68781 -21.58065 -20.19439 -20.00719 -17.73224 -17.53731 -16.94779 -16.56922 -15.88962 -15.63001 -15.41090 -15.09728 -14.98113 -14.54774 -14.26327 -13.96786 -13.88408 -13.76267 -13.56529 -13.30188 -13.03442 -12.92573 -12.77816 -12.49368 -12.35970 -12.04152 -11.83988 -11.78000 -11.66724 -11.26407 -10.99373 -10.90013 -10.81884 -10.72169 -10.50330 -10.15581 -9.85110 -9.78959 -9.59835 -9.08534 -8.64821 -8.34635 -7.74196 -7.63140 -7.13943 -5.87233 -3.18696 1.49181 1.80332 1.88266 2.51624 2.93406 3.36535 3.44098 3.44740 3.52006 3.55971 4.23032 4.49735 4.80485 4.84984 5.03106 5.04917 5.06373 5.12354 5.15394 5.22678 5.26832 5.42177 5.46964 5.49991 5.53102 5.56031 5.57588 5.66163 5.70166 5.85529 5.94769 5.95277 5.96259 6.25235 6.30994 6.43697 6.57972 6.71638 6.84026 6.91395 7.15966 7.32493 7.65006 7.74497 7.87055 8.29337 8.51002 9.42263 9.92521 10.29970 11.34005 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007879 B = 0.004134 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3552.864589 B = 6771.909548 C = 9116.773886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.313 6.313 3 C 0.122 3.878 4 C -0.219 4.219 5 C -0.094 4.094 6 C -0.163 4.163 7 C -0.044 4.044 8 C -0.115 4.115 9 C 0.208 3.792 10 H 0.070 0.930 11 C 0.125 3.875 12 N -0.705 5.705 13 C 0.532 3.468 14 O -0.534 6.534 15 C -0.092 4.092 16 H 0.109 0.891 17 C -0.140 4.140 18 S -0.193 6.193 19 C -0.139 4.139 20 N -0.716 5.716 21 C -0.241 4.241 22 H 0.071 0.929 23 C -0.006 4.006 24 N -0.928 5.928 25 Si 0.904 3.096 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.139 0.861 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.411 0.589 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.101 0.899 45 H 0.387 0.613 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.593 -6.390 -6.488 12.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.077 3.923 4 C -0.238 4.238 5 C -0.113 4.113 6 C -0.182 4.182 7 C -0.062 4.062 8 C -0.119 4.119 9 C 0.097 3.903 10 H 0.088 0.912 11 C 0.001 3.999 12 N -0.357 5.357 13 C 0.315 3.685 14 O -0.411 6.411 15 C -0.224 4.224 16 H 0.128 0.872 17 C -0.199 4.199 18 S 0.033 5.967 19 C -0.308 4.308 20 N -0.357 5.357 21 C -0.372 4.372 22 H 0.089 0.911 23 C -0.202 4.202 24 N -0.576 5.576 25 Si 0.735 3.265 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.157 0.843 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.247 0.753 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.120 0.880 45 H 0.221 0.779 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.001 -5.706 -7.940 13.289 hybrid contribution 0.579 -0.436 2.613 2.712 sum -8.422 -6.142 -5.327 11.706 Atomic orbital electron populations 1.22956 0.79393 1.03332 1.00876 1.86082 1.20470 1.27196 1.88944 1.18941 0.91965 0.83808 0.97627 1.21050 0.99214 0.92624 1.10862 1.20784 0.94716 0.96456 0.99313 1.21068 0.93731 0.98536 1.04839 1.21036 1.01132 0.90396 0.93635 1.20396 0.89959 0.98211 1.03370 1.19250 0.87681 0.91966 0.91369 0.91173 1.21565 0.93268 0.87308 0.97780 1.45862 1.48870 1.31626 1.09315 1.19525 0.81432 0.83304 0.84196 1.90707 1.53298 1.65176 1.31902 1.23324 1.00983 0.98437 0.99643 0.87233 1.21968 1.00395 0.94303 1.03224 1.87320 1.47760 1.45350 1.16303 1.23532 1.01221 0.99816 1.06256 1.42494 1.04877 1.83461 1.04884 1.19189 0.94626 1.40521 0.82883 0.91122 1.24709 0.95871 1.02087 0.97560 1.69655 1.00637 1.53702 1.33600 0.86243 0.77358 0.77296 0.85585 1.21738 1.21800 1.20765 0.93098 0.93087 0.88738 0.86362 0.86761 0.86558 0.84314 0.91710 0.91315 0.75277 0.90785 0.91555 0.90945 0.90452 0.90536 0.88034 0.77851 0.93392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.31 -4.84 9.63 -19.44 -0.19 -5.02 16 3 C 0.12 2.05 6.66 -39.22 -0.26 1.79 16 4 C -0.22 -3.23 9.04 -39.44 -0.36 -3.59 16 5 C -0.09 -1.38 10.04 -39.61 -0.40 -1.78 16 6 C -0.16 -2.65 10.04 -39.56 -0.40 -3.05 16 7 C -0.04 -0.82 9.32 -39.61 -0.37 -1.19 16 8 C -0.11 -2.14 5.04 -104.47 -0.53 -2.67 16 9 C 0.21 3.97 2.38 -69.08 -0.16 3.80 16 10 H 0.07 1.39 7.63 -51.93 -0.40 1.00 16 11 C 0.13 2.22 5.22 -4.04 -0.02 2.20 16 12 N -0.70 -11.76 5.39 -60.30 -0.32 -12.09 16 13 C 0.53 9.01 6.95 -10.99 -0.08 8.94 16 14 O -0.53 -10.80 16.14 5.55 0.09 -10.71 16 15 C -0.09 -1.25 3.17 -27.88 -0.09 -1.34 16 16 H 0.11 1.40 8.14 -51.92 -0.42 0.98 16 17 C -0.14 -1.52 9.08 37.16 0.34 -1.18 16 18 S -0.19 -2.69 21.10 -107.50 -2.27 -4.96 16 19 C -0.14 -1.31 10.45 101.05 1.06 -0.25 16 20 N -0.72 -15.97 3.29 -54.54 -0.18 -16.15 16 21 C -0.24 -6.10 9.92 -15.06 -0.15 -6.25 16 22 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 23 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 24 N -0.93 -25.96 13.06 55.49 0.72 -25.23 16 25 Si 0.90 21.32 29.55 -169.99 -5.02 16.30 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 29 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 30 H 0.05 0.48 7.66 -51.93 -0.40 0.09 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.12 1.42 6.30 -52.48 -0.33 1.09 16 33 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 34 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.14 2.86 7.26 -52.48 -0.38 2.47 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.41 6.76 8.14 -40.82 -0.33 6.42 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.59 6.92 -51.93 -0.36 0.23 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 0.69 8.14 -51.92 -0.42 0.26 16 43 H 0.08 0.61 7.14 -51.92 -0.37 0.24 16 44 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.39 9.32 7.80 -40.82 -0.32 9.00 16 46 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 396.00 15.07 5.97 5.97 Total: -1.00 -30.62 396.00 -8.78 -39.39 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: -7.06 Total: 16.01 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -0.52 Total: -3.50 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.22 Total: -53.47 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.10 Total: -15.74 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -2.69 SS G_CDS: -2.27 Total: -4.96 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.62 -8.78 -39.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198555299.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.823 kcal (2) G-P(sol) polarization free energy of solvation -30.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds