Wall clock time and date at job start Tue Mar 31 2020 21:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35905 * 116.99763 * 2 1 4 4 C 1.38745 * 120.05677 * 0.02562 * 3 2 1 5 5 C 1.38120 * 119.94634 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.05501 * 359.97438 * 5 4 3 7 7 C 1.38241 * 120.11227 * 359.74597 * 6 5 4 8 8 C 1.38165 * 120.05359 * 0.50906 * 7 6 5 9 9 C 1.50703 * 120.03079 * 179.76364 * 8 7 6 10 10 H 1.09002 * 109.47380 * 144.72323 * 9 8 7 11 11 C 1.53002 * 109.47423 * 264.72843 * 9 8 7 12 12 N 1.46497 * 109.46857 * 174.99782 * 11 9 8 13 13 C 1.34779 * 119.99904 * 179.97438 * 12 11 9 14 14 O 1.21283 * 119.99840 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00429 * 179.97438 * 13 12 11 16 16 H 1.09001 * 109.46613 * 325.00128 * 15 13 12 17 17 C 1.53006 * 109.47239 * 84.99736 * 15 13 12 18 18 S 1.81391 * 109.47387 * 205.00109 * 15 13 12 19 19 C 1.81402 * 103.00320 * 175.00148 * 18 15 13 20 20 N 1.46504 * 109.46587 * 24.72684 * 9 8 7 21 21 C 1.36938 * 119.99848 * 85.00079 * 20 9 8 22 22 H 1.07997 * 120.00299 * 359.97438 * 21 20 9 23 23 C 1.38818 * 119.99841 * 179.97438 * 21 20 9 24 24 N 1.31621 * 120.00037 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00161 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47007 * 90.00097 * 25 23 21 27 27 H 1.48494 * 109.47637 * 210.00372 * 25 23 21 28 28 H 1.48509 * 109.47270 * 330.00651 * 25 23 21 29 29 H 1.09000 * 109.47251 * 299.99563 * 1 2 3 30 30 H 1.08992 * 109.47389 * 60.00333 * 1 2 3 31 31 H 1.09000 * 109.46958 * 179.97438 * 1 2 3 32 32 H 1.08007 * 120.03124 * 359.95552 * 4 3 2 33 33 H 1.07999 * 119.97326 * 179.97438 * 5 4 3 34 34 H 1.08002 * 119.94295 * 180.02562 * 6 5 4 35 35 H 1.08005 * 119.97585 * 180.25217 * 7 6 5 36 36 H 1.08991 * 109.46961 * 54.99661 * 11 9 8 37 37 H 1.09000 * 109.46564 * 294.99477 * 11 9 8 38 38 H 0.96995 * 120.00485 * 359.97438 * 12 11 9 39 39 H 1.09001 * 109.47002 * 60.00070 * 17 15 13 40 40 H 1.08993 * 109.46955 * 180.02562 * 17 15 13 41 41 H 1.09000 * 109.47050 * 300.00336 * 17 15 13 42 42 H 1.09007 * 109.46730 * 300.00160 * 19 18 15 43 43 H 1.09003 * 109.46946 * 59.99556 * 19 18 15 44 44 H 1.08997 * 109.47387 * 180.02562 * 19 18 15 45 45 H 0.97000 * 120.00154 * 264.99359 * 20 9 8 46 46 H 0.96994 * 119.99926 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9207 3.6047 0.0011 6 6 3.3018 3.6758 0.0016 7 6 4.0559 2.5172 0.0069 8 6 3.4311 1.2849 0.0011 9 6 4.2537 0.0222 0.0015 10 1 3.7465 -0.7417 0.5908 11 6 4.4274 -0.4739 -1.4354 12 7 5.3247 -1.6318 -1.4471 13 6 5.6249 -2.2400 -2.6118 14 8 5.1517 -1.8290 -3.6501 15 6 6.5484 -3.4307 -2.6240 16 1 7.3148 -3.3039 -1.8593 17 6 5.7462 -4.7014 -2.3363 18 16 7.3359 -3.5685 -4.2522 19 6 8.5032 -4.9387 -4.0264 20 7 5.5689 0.2966 0.5857 21 6 5.7378 0.2510 1.9439 22 1 4.9014 0.0132 2.5844 23 6 6.9841 0.5104 2.4974 24 7 8.0034 0.8007 1.7169 25 14 7.2143 0.4490 4.3501 26 1 7.5962 -0.9275 4.7560 27 1 8.2855 1.3974 4.7476 28 1 5.9441 0.8279 5.0197 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2127 2.3204 0.0002 33 1 1.3338 4.5113 0.0011 34 1 3.7920 4.6382 0.0024 35 1 5.1343 2.5754 0.0114 36 1 4.8536 0.3223 -2.0456 37 1 3.4571 -0.7620 -1.8400 38 1 5.7029 -1.9607 -0.6167 39 1 4.9798 -4.8282 -3.1009 40 1 6.4142 -5.5626 -2.3447 41 1 5.2730 -4.6186 -1.3578 42 1 9.2123 -4.6857 -3.2381 43 1 7.9564 -5.8396 -3.7478 44 1 9.0425 -5.1137 -4.9573 45 1 6.3201 0.5104 0.0105 46 1 8.8741 0.9823 2.1037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198555299.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:38 Heat of formation + Delta-G solvation = -53.454816 kcal Electronic energy + Delta-G solvation = -27424.618791 eV Core-core repulsion = 23633.569813 eV Total energy + Delta-G solvation = -3791.048978 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.26529 -40.68491 -38.50212 -37.33035 -35.28222 -34.39487 -33.43983 -31.33987 -30.94374 -29.70609 -29.02667 -27.96707 -26.08932 -25.24122 -24.02372 -22.81979 -21.63503 -21.36965 -19.36137 -18.90070 -18.32433 -17.84155 -17.21462 -16.92489 -16.55345 -16.43701 -16.24685 -16.14861 -15.41722 -15.33866 -15.19250 -15.12836 -14.69557 -14.45768 -14.35252 -14.23360 -13.94091 -13.69259 -13.51320 -13.23498 -12.95986 -12.85377 -12.83204 -12.75470 -12.65587 -12.51213 -12.24768 -12.05761 -11.91591 -11.84525 -11.60911 -11.07734 -10.91113 -10.82526 -10.11226 -9.67422 -9.08578 -8.95271 -8.71447 -7.90793 -5.20703 0.44057 0.53214 0.60904 1.48733 1.50774 1.52529 1.57817 1.66808 2.19949 2.49896 2.57115 2.93596 3.41979 3.61414 3.76105 3.83433 3.98112 4.01232 4.09681 4.15778 4.30012 4.35413 4.38540 4.39177 4.40784 4.46100 4.58685 4.61114 4.63080 4.69071 4.76693 4.78485 4.91851 4.92179 5.04016 5.10337 5.21285 5.38438 5.46023 5.56551 5.63511 5.83070 6.01714 6.28750 6.47976 6.58521 7.13518 7.37282 8.03369 8.32495 9.30957 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007879 B = 0.004134 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3552.864589 B = 6771.909548 C = 9116.773886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.333 6.333 3 C 0.117 3.883 4 C -0.214 4.214 5 C -0.085 4.085 6 C -0.172 4.172 7 C -0.067 4.067 8 C -0.142 4.142 9 C 0.219 3.781 10 H 0.063 0.937 11 C 0.139 3.861 12 N -0.701 5.701 13 C 0.528 3.472 14 O -0.570 6.570 15 C -0.080 4.080 16 H 0.118 0.882 17 C -0.133 4.133 18 S -0.262 6.262 19 C -0.120 4.120 20 N -0.717 5.717 21 C -0.228 4.228 22 H 0.069 0.931 23 C -0.059 4.059 24 N -0.961 5.961 25 Si 0.961 3.039 26 H -0.286 1.286 27 H -0.300 1.300 28 H -0.277 1.277 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.115 0.885 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.132 0.868 35 H 0.107 0.893 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.413 0.587 39 H 0.065 0.935 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.116 0.884 45 H 0.376 0.624 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.530 -7.229 -5.834 14.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.247 6.247 3 C 0.071 3.929 4 C -0.232 4.232 5 C -0.103 4.103 6 C -0.190 4.190 7 C -0.086 4.086 8 C -0.146 4.146 9 C 0.110 3.890 10 H 0.081 0.919 11 C 0.014 3.986 12 N -0.353 5.353 13 C 0.314 3.686 14 O -0.450 6.450 15 C -0.211 4.211 16 H 0.136 0.864 17 C -0.192 4.192 18 S -0.037 6.037 19 C -0.288 4.288 20 N -0.357 5.357 21 C -0.360 4.360 22 H 0.087 0.913 23 C -0.252 4.252 24 N -0.611 5.611 25 Si 0.791 3.209 26 H -0.213 1.213 27 H -0.227 1.227 28 H -0.203 1.203 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.133 0.867 32 H 0.171 0.829 33 H 0.170 0.830 34 H 0.150 0.850 35 H 0.125 0.875 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.250 0.750 39 H 0.084 0.916 40 H 0.112 0.888 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.115 0.885 44 H 0.135 0.865 45 H 0.209 0.791 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -10.989 -6.568 -7.275 14.725 hybrid contribution 1.044 -0.184 2.342 2.571 sum -9.945 -6.753 -4.933 12.993 Atomic orbital electron populations 1.23305 0.76796 1.05272 1.02128 1.86055 1.23169 1.26739 1.88733 1.18999 0.91436 0.85191 0.97272 1.21452 1.00894 0.91775 1.09115 1.21211 0.94059 0.97980 0.97083 1.21283 0.94827 0.98194 1.04731 1.20887 0.99913 0.91866 0.95909 1.20233 0.91249 0.97392 1.05773 1.19182 0.86093 0.92336 0.91422 0.91885 1.21338 0.93384 0.87154 0.96685 1.45845 1.48631 1.31234 1.09574 1.20146 0.81287 0.83840 0.83367 1.90682 1.54839 1.66422 1.33025 1.23259 1.00614 0.97943 0.99321 0.86427 1.21971 1.00408 0.93636 1.03223 1.87537 1.49953 1.48725 1.17515 1.23586 0.99932 0.97879 1.07395 1.42465 1.05889 1.83478 1.03880 1.19374 0.94211 1.38356 0.84068 0.91331 1.25311 0.95889 1.03136 1.00860 1.69794 1.00725 1.55771 1.34818 0.85334 0.76874 0.77002 0.81654 1.21292 1.22737 1.20287 0.91870 0.91620 0.86695 0.82939 0.82989 0.85046 0.87461 0.93545 0.91012 0.75042 0.91573 0.88846 0.90184 0.89690 0.88545 0.86541 0.79123 0.94125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.33 -9.80 9.63 -92.48 -0.89 -10.69 16 3 C 0.12 3.79 6.66 22.50 0.15 3.94 16 4 C -0.21 -5.70 9.04 22.36 0.20 -5.50 16 5 C -0.09 -2.25 10.04 22.25 0.22 -2.02 16 6 C -0.17 -5.45 10.04 22.28 0.22 -5.23 16 7 C -0.07 -2.60 9.32 22.25 0.21 -2.39 16 8 C -0.14 -5.40 5.04 -19.77 -0.10 -5.50 16 9 C 0.22 8.63 2.38 44.25 0.11 8.74 16 10 H 0.06 2.56 7.63 -2.39 -0.02 2.54 16 11 C 0.14 5.15 5.22 86.38 0.45 5.60 16 12 N -0.70 -24.19 5.39 -463.07 -2.49 -26.68 16 13 C 0.53 18.36 6.95 87.66 0.61 18.96 16 14 O -0.57 -23.91 16.14 -3.04 -0.05 -23.96 16 15 C -0.08 -2.14 3.17 29.85 0.09 -2.05 16 16 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 17 C -0.13 -2.70 9.08 71.98 0.65 -2.05 16 18 S -0.26 -7.29 21.10 -56.49 -1.19 -8.48 16 19 C -0.12 -1.98 10.45 113.37 1.19 -0.80 16 20 N -0.72 -33.27 3.29 -326.48 -1.07 -34.34 16 21 C -0.23 -11.77 9.92 84.03 0.83 -10.94 16 22 H 0.07 3.53 7.83 -2.91 -0.02 3.50 16 23 C -0.06 -3.17 5.50 84.86 0.47 -2.71 16 24 N -0.96 -55.30 13.06 21.65 0.28 -55.02 16 25 Si 0.96 44.35 29.55 68.60 2.03 46.38 16 26 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 27 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 28 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 29 H 0.06 1.02 7.66 -2.39 -0.02 1.00 16 30 H 0.07 1.03 7.66 -2.39 -0.02 1.01 16 31 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.15 2.97 6.30 -2.91 -0.02 2.95 16 33 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 34 H 0.13 3.63 8.06 -2.91 -0.02 3.61 16 35 H 0.11 4.75 7.26 -2.91 -0.02 4.73 16 36 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.41 13.93 8.14 -92.71 -0.75 13.18 16 39 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.09 1.39 6.92 -2.39 -0.02 1.37 16 41 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.10 1.23 7.14 -2.39 -0.02 1.22 16 44 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.38 19.08 7.80 -92.71 -0.72 18.36 16 46 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -68.76 396.00 2.55 -66.21 By element: Atomic # 1 Polarization: 47.54 SS G_CDS: -0.48 Total: 47.05 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: 6.42 Total: -0.47 kcal Atomic # 7 Polarization: -112.75 SS G_CDS: -3.29 Total: -116.04 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -0.94 Total: -34.65 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: -7.29 SS G_CDS: -1.19 Total: -8.48 kcal Total: -68.76 2.55 -66.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198555299.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.760 kcal (2) G-P(sol) polarization free energy of solvation -68.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds