Wall clock time and date at job start Tue Mar 31 2020 21:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35904 * 117.00164 * 2 1 4 4 C 1.38752 * 120.05259 * 0.02562 * 3 2 1 5 5 C 1.38124 * 119.94299 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05470 * 0.02562 * 5 4 3 7 7 C 1.38245 * 120.11052 * 359.74151 * 6 5 4 8 8 C 1.38164 * 120.05700 * 0.50936 * 7 6 5 9 9 C 1.50699 * 120.02931 * 179.77028 * 8 7 6 10 10 H 1.08999 * 109.47053 * 224.24679 * 9 8 7 11 11 C 1.53005 * 109.46946 * 344.24147 * 9 8 7 12 12 N 1.46493 * 109.46950 * 174.99969 * 11 9 8 13 13 C 1.34778 * 120.00328 * 179.97438 * 12 11 9 14 14 O 1.21281 * 119.99514 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00547 * 180.02562 * 13 12 11 16 16 H 1.09000 * 109.47042 * 40.00231 * 15 13 12 17 17 C 1.52995 * 109.47065 * 280.00382 * 15 13 12 18 18 S 1.81402 * 109.47270 * 160.00066 * 15 13 12 19 19 C 1.81399 * 103.00011 * 184.99990 * 18 15 13 20 20 N 1.46494 * 109.47236 * 104.24176 * 9 8 7 21 21 C 1.36940 * 120.00022 * 300.00454 * 20 9 8 22 22 H 1.07993 * 120.00117 * 4.93042 * 21 20 9 23 23 C 1.38811 * 120.00003 * 184.94034 * 21 20 9 24 24 N 1.31621 * 119.99873 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00177 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46719 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47172 * 119.99447 * 25 23 21 28 28 H 1.48495 * 109.47236 * 239.99623 * 25 23 21 29 29 H 1.09003 * 109.47294 * 60.00047 * 1 2 3 30 30 H 1.09002 * 109.47447 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47318 * 299.99870 * 1 2 3 32 32 H 1.07998 * 120.02998 * 359.95699 * 4 3 2 33 33 H 1.08005 * 119.97134 * 179.97438 * 5 4 3 34 34 H 1.08001 * 119.94349 * 179.97438 * 6 5 4 35 35 H 1.07999 * 119.96928 * 180.26170 * 7 6 5 36 36 H 1.08998 * 109.46861 * 54.99737 * 11 9 8 37 37 H 1.08994 * 109.47030 * 295.00205 * 11 9 8 38 38 H 0.97004 * 120.00186 * 0.02562 * 12 11 9 39 39 H 1.08998 * 109.47575 * 299.99874 * 17 15 13 40 40 H 1.09003 * 109.47447 * 59.99993 * 17 15 13 41 41 H 1.09002 * 109.47315 * 179.97438 * 17 15 13 42 42 H 1.08996 * 109.47052 * 180.02562 * 19 18 15 43 43 H 1.08997 * 109.47006 * 300.00265 * 19 18 15 44 44 H 1.09004 * 109.46747 * 60.00124 * 19 18 15 45 45 H 0.97002 * 120.00496 * 120.00281 * 20 9 8 46 46 H 0.97003 * 119.99480 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3019 3.6758 0.0005 7 6 4.0559 2.5171 0.0049 8 6 3.4311 1.2848 -0.0009 9 6 4.2537 0.0221 -0.0014 10 1 3.8379 -0.6821 -0.7220 11 6 5.6968 0.3537 -0.3869 12 7 6.5221 -0.8511 -0.2719 13 6 7.8368 -0.7978 -0.5638 14 8 8.3366 0.2478 -0.9213 15 6 8.6857 -2.0374 -0.4460 16 1 8.1262 -2.8973 -0.8143 17 6 9.0594 -2.2621 1.0205 18 16 10.1956 -1.8319 -1.4302 19 6 10.9977 -3.4529 -1.2902 20 7 4.2306 -0.5763 1.3355 21 6 4.7063 0.1281 2.4093 22 1 5.0244 1.1526 2.2849 23 6 4.7798 -0.4749 3.6574 24 7 4.3919 -1.7234 3.8090 25 14 5.4294 0.4857 5.1220 26 1 5.7975 1.8579 4.6900 27 1 4.3796 0.5610 6.1695 28 1 6.6278 -0.1984 5.6705 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2128 2.3203 0.0003 33 1 1.3339 4.5114 0.0011 34 1 3.7922 4.6381 0.0005 35 1 5.1343 2.5752 0.0087 36 1 6.0832 1.1240 0.2804 37 1 5.7241 0.7162 -1.4145 38 1 6.1222 -1.6875 0.0137 39 1 9.6189 -1.4022 1.3888 40 1 8.1521 -2.3856 1.6119 41 1 9.6731 -3.1589 1.1058 42 1 11.9315 -3.4460 -1.8523 43 1 11.2066 -3.6655 -0.2418 44 1 10.3369 -4.2211 -1.6920 45 1 3.8784 -1.4714 1.4603 46 1 4.4429 -2.1446 4.6813 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198555301.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:41 Heat of formation + Delta-G solvation = -30.314276 kcal Electronic energy + Delta-G solvation = -27744.001786 eV Core-core repulsion = 23953.956257 eV Total energy + Delta-G solvation = -3790.045529 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.94801 -39.21054 -37.22216 -35.81756 -33.56975 -32.91250 -31.85961 -29.92642 -29.51855 -28.86862 -27.50659 -26.67048 -24.82174 -23.87224 -22.56948 -21.54401 -20.03693 -19.85336 -17.80386 -17.30608 -16.96787 -16.42520 -15.72724 -15.55364 -15.23934 -15.11124 -14.96116 -14.51366 -14.16048 -14.05232 -13.99172 -13.66931 -13.56547 -13.13807 -13.07828 -12.84437 -12.58964 -12.45625 -12.14536 -11.91191 -11.73711 -11.62219 -11.58069 -11.54013 -10.94631 -10.91541 -10.76174 -10.53212 -10.46692 -9.98028 -9.78821 -9.72996 -9.48254 -9.01821 -8.47540 -8.41085 -7.69984 -7.60614 -7.05143 -5.82187 -3.11593 1.55563 1.77322 1.90502 2.56248 3.02333 3.39675 3.47714 3.49218 3.65838 3.69048 4.20450 4.57941 4.91570 4.96064 5.05655 5.07604 5.10990 5.14643 5.19505 5.30713 5.38618 5.40871 5.53048 5.55481 5.63444 5.69135 5.71213 5.73380 5.84233 5.85232 5.91174 5.99749 6.08855 6.25486 6.37909 6.44975 6.61351 6.73050 6.85473 6.97949 7.04314 7.23060 7.71463 7.84043 7.99445 8.34312 8.64032 9.48251 9.97759 10.35076 11.39506 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010040 B = 0.003873 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2788.157779 B = 7227.521141 C = 8524.327452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.302 6.302 3 C 0.144 3.856 4 C -0.216 4.216 5 C -0.095 4.095 6 C -0.161 4.161 7 C -0.080 4.080 8 C -0.095 4.095 9 C 0.208 3.792 10 H 0.072 0.928 11 C 0.111 3.889 12 N -0.693 5.693 13 C 0.531 3.469 14 O -0.536 6.536 15 C -0.087 4.087 16 H 0.104 0.896 17 C -0.143 4.143 18 S -0.196 6.196 19 C -0.140 4.140 20 N -0.704 5.704 21 C -0.227 4.227 22 H 0.070 0.930 23 C -0.007 4.007 24 N -0.930 5.930 25 Si 0.897 3.103 26 H -0.280 1.280 27 H -0.293 1.293 28 H -0.292 1.292 29 H 0.047 0.953 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.129 0.871 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.404 0.596 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.062 0.938 42 H 0.100 0.900 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.387 0.613 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.239 -0.943 -10.467 10.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.215 6.215 3 C 0.098 3.902 4 C -0.234 4.234 5 C -0.113 4.113 6 C -0.179 4.179 7 C -0.099 4.099 8 C -0.099 4.099 9 C 0.096 3.904 10 H 0.090 0.910 11 C -0.016 4.016 12 N -0.344 5.344 13 C 0.314 3.686 14 O -0.414 6.414 15 C -0.219 4.219 16 H 0.122 0.878 17 C -0.202 4.202 18 S 0.029 5.971 19 C -0.309 4.309 20 N -0.343 5.343 21 C -0.358 4.358 22 H 0.088 0.912 23 C -0.203 4.203 24 N -0.579 5.579 25 Si 0.728 3.272 26 H -0.205 1.205 27 H -0.220 1.220 28 H -0.219 1.219 29 H 0.065 0.935 30 H 0.113 0.887 31 H 0.070 0.930 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.147 0.853 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.240 0.760 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.119 0.881 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.222 0.778 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.620 0.570 -11.135 11.167 hybrid contribution -0.820 -1.058 2.054 2.452 sum -0.201 -0.488 -9.081 9.096 Atomic orbital electron populations 1.22949 0.79571 1.03377 1.00582 1.86145 1.20205 1.26782 1.88369 1.18747 0.91727 0.83890 0.95802 1.21091 0.99368 0.92634 1.10346 1.20749 0.94626 0.96494 0.99457 1.20957 0.93853 0.98173 1.04904 1.21044 1.00143 0.91221 0.97445 1.19901 0.90882 0.96731 1.02409 1.19152 0.90434 0.91170 0.89601 0.90997 1.21956 0.92624 0.87215 0.99760 1.45597 1.07612 1.14133 1.67016 1.19478 0.82492 0.88766 0.77826 1.90693 1.72389 1.31059 1.47265 1.23325 0.97045 1.01004 1.00504 0.87800 1.21986 1.03396 1.02786 0.92041 1.87290 1.24459 1.18075 1.67228 1.23522 1.03725 0.98190 1.05416 1.42353 1.73535 1.17613 1.00833 1.19140 1.33911 0.95472 0.87322 0.91199 1.24647 1.02022 0.96099 0.97514 1.69662 1.53652 1.11563 1.22989 0.86261 0.78172 0.79307 0.83413 1.20514 1.22015 1.21937 0.93450 0.88719 0.93042 0.86276 0.86735 0.86625 0.85339 0.91018 0.92542 0.76044 0.90812 0.89962 0.91858 0.88131 0.90444 0.90706 0.77838 0.93707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.30 -5.17 9.82 -19.44 -0.19 -5.36 16 3 C 0.14 2.54 6.66 -39.22 -0.26 2.28 16 4 C -0.22 -3.32 9.04 -39.43 -0.36 -3.67 16 5 C -0.09 -1.38 10.04 -39.60 -0.40 -1.78 16 6 C -0.16 -2.47 10.04 -39.56 -0.40 -2.87 16 7 C -0.08 -1.38 8.80 -39.61 -0.35 -1.73 16 8 C -0.10 -1.75 4.74 -104.48 -0.49 -2.25 16 9 C 0.21 3.85 2.69 -69.08 -0.19 3.66 16 10 H 0.07 1.25 7.99 -51.93 -0.42 0.84 16 11 C 0.11 1.99 3.97 -4.04 -0.02 1.98 16 12 N -0.69 -11.94 5.39 -60.30 -0.32 -12.27 16 13 C 0.53 9.42 7.00 -10.99 -0.08 9.35 16 14 O -0.54 -11.31 16.04 5.56 0.09 -11.22 16 15 C -0.09 -1.24 3.18 -27.89 -0.09 -1.33 16 16 H 0.10 1.25 8.14 -51.92 -0.42 0.83 16 17 C -0.14 -1.98 9.08 37.16 0.34 -1.64 16 18 S -0.20 -2.77 21.04 -107.50 -2.26 -5.04 16 19 C -0.14 -1.32 10.45 101.05 1.06 -0.27 16 20 N -0.70 -15.65 4.72 -54.55 -0.26 -15.91 16 21 C -0.23 -5.78 8.79 -15.06 -0.13 -5.91 16 22 H 0.07 1.82 7.06 -52.49 -0.37 1.45 16 23 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 24 N -0.93 -26.17 13.06 55.49 0.72 -25.45 16 25 Si 0.90 22.08 29.55 -169.99 -5.02 17.06 16 26 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 29 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.62 7.66 -51.93 -0.40 0.23 16 32 H 0.12 1.53 6.30 -52.49 -0.33 1.20 16 33 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 34 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 35 H 0.13 2.18 5.83 -52.49 -0.31 1.87 16 36 H 0.07 1.45 5.89 -51.93 -0.31 1.15 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.40 6.63 8.14 -40.82 -0.33 6.30 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.06 0.71 6.92 -51.93 -0.36 0.35 16 42 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.08 0.68 7.14 -51.93 -0.37 0.31 16 44 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 45 H 0.39 9.26 8.04 -40.82 -0.33 8.93 16 46 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 390.81 15.07 5.89 5.89 Total: -1.00 -31.47 390.81 -8.68 -40.15 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: -6.85 Total: 15.23 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -0.47 Total: -3.09 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: 0.14 Total: -53.63 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.10 Total: -16.58 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: -2.77 SS G_CDS: -2.26 Total: -5.04 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.47 -8.68 -40.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198555301.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.837 kcal (2) G-P(sol) polarization free energy of solvation -31.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds