Wall clock time and date at job start Tue Mar 31 2020 21:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35904 * 117.00164 * 2 1 4 4 C 1.38752 * 120.05259 * 0.02562 * 3 2 1 5 5 C 1.38124 * 119.94299 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05470 * 0.02562 * 5 4 3 7 7 C 1.38245 * 120.11052 * 359.74151 * 6 5 4 8 8 C 1.38164 * 120.05700 * 0.50936 * 7 6 5 9 9 C 1.50699 * 120.02931 * 179.77028 * 8 7 6 10 10 H 1.08999 * 109.47053 * 224.24679 * 9 8 7 11 11 C 1.53005 * 109.46946 * 344.24147 * 9 8 7 12 12 N 1.46493 * 109.46950 * 174.99969 * 11 9 8 13 13 C 1.34778 * 120.00328 * 179.97438 * 12 11 9 14 14 O 1.21281 * 119.99514 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00547 * 180.02562 * 13 12 11 16 16 H 1.09000 * 109.47042 * 40.00231 * 15 13 12 17 17 C 1.52995 * 109.47065 * 280.00382 * 15 13 12 18 18 S 1.81402 * 109.47270 * 160.00066 * 15 13 12 19 19 C 1.81399 * 103.00011 * 184.99990 * 18 15 13 20 20 N 1.46494 * 109.47236 * 104.24176 * 9 8 7 21 21 C 1.36940 * 120.00022 * 300.00454 * 20 9 8 22 22 H 1.07993 * 120.00117 * 4.93042 * 21 20 9 23 23 C 1.38811 * 120.00003 * 184.94034 * 21 20 9 24 24 N 1.31621 * 119.99873 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00177 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46719 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47172 * 119.99447 * 25 23 21 28 28 H 1.48495 * 109.47236 * 239.99623 * 25 23 21 29 29 H 1.09003 * 109.47294 * 60.00047 * 1 2 3 30 30 H 1.09002 * 109.47447 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47318 * 299.99870 * 1 2 3 32 32 H 1.07998 * 120.02998 * 359.95699 * 4 3 2 33 33 H 1.08005 * 119.97134 * 179.97438 * 5 4 3 34 34 H 1.08001 * 119.94349 * 179.97438 * 6 5 4 35 35 H 1.07999 * 119.96928 * 180.26170 * 7 6 5 36 36 H 1.08998 * 109.46861 * 54.99737 * 11 9 8 37 37 H 1.08994 * 109.47030 * 295.00205 * 11 9 8 38 38 H 0.97004 * 120.00186 * 0.02562 * 12 11 9 39 39 H 1.08998 * 109.47575 * 299.99874 * 17 15 13 40 40 H 1.09003 * 109.47447 * 59.99993 * 17 15 13 41 41 H 1.09002 * 109.47315 * 179.97438 * 17 15 13 42 42 H 1.08996 * 109.47052 * 180.02562 * 19 18 15 43 43 H 1.08997 * 109.47006 * 300.00265 * 19 18 15 44 44 H 1.09004 * 109.46747 * 60.00124 * 19 18 15 45 45 H 0.97002 * 120.00496 * 120.00281 * 20 9 8 46 46 H 0.97003 * 119.99480 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3019 3.6758 0.0005 7 6 4.0559 2.5171 0.0049 8 6 3.4311 1.2848 -0.0009 9 6 4.2537 0.0221 -0.0014 10 1 3.8379 -0.6821 -0.7220 11 6 5.6968 0.3537 -0.3869 12 7 6.5221 -0.8511 -0.2719 13 6 7.8368 -0.7978 -0.5638 14 8 8.3366 0.2478 -0.9213 15 6 8.6857 -2.0374 -0.4460 16 1 8.1262 -2.8973 -0.8143 17 6 9.0594 -2.2621 1.0205 18 16 10.1956 -1.8319 -1.4302 19 6 10.9977 -3.4529 -1.2902 20 7 4.2306 -0.5763 1.3355 21 6 4.7063 0.1281 2.4093 22 1 5.0244 1.1526 2.2849 23 6 4.7798 -0.4749 3.6574 24 7 4.3919 -1.7234 3.8090 25 14 5.4294 0.4857 5.1220 26 1 5.7975 1.8579 4.6900 27 1 4.3796 0.5610 6.1695 28 1 6.6278 -0.1984 5.6705 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2128 2.3203 0.0003 33 1 1.3339 4.5114 0.0011 34 1 3.7922 4.6381 0.0005 35 1 5.1343 2.5752 0.0087 36 1 6.0832 1.1240 0.2804 37 1 5.7241 0.7162 -1.4145 38 1 6.1222 -1.6875 0.0137 39 1 9.6189 -1.4022 1.3888 40 1 8.1521 -2.3856 1.6119 41 1 9.6731 -3.1589 1.1058 42 1 11.9315 -3.4460 -1.8523 43 1 11.2066 -3.6655 -0.2418 44 1 10.3369 -4.2211 -1.6920 45 1 3.8784 -1.4714 1.4603 46 1 4.4429 -2.1446 4.6813 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198555301.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:40 Heat of formation + Delta-G solvation = -50.607664 kcal Electronic energy + Delta-G solvation = -27744.881774 eV Core-core repulsion = 23953.956257 eV Total energy + Delta-G solvation = -3790.925517 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.24458 -40.61179 -38.52266 -37.29778 -35.14617 -34.35811 -33.38589 -31.44273 -30.83664 -29.66721 -28.87595 -27.83599 -26.41635 -25.33427 -23.99979 -22.78586 -21.45709 -21.28366 -19.38250 -18.77599 -18.31186 -17.71905 -17.11789 -16.98647 -16.45697 -16.42577 -16.18253 -16.09265 -15.66798 -15.39467 -15.20413 -15.09422 -14.73167 -14.38639 -14.28023 -14.07867 -13.89539 -13.59717 -13.40318 -13.21750 -13.07560 -12.94049 -12.89702 -12.75270 -12.66443 -12.62455 -12.21512 -11.87675 -11.82777 -11.73868 -11.57989 -11.02268 -10.85472 -10.80606 -9.96450 -9.70893 -9.08173 -8.83456 -8.69657 -7.88458 -5.14315 0.49747 0.51326 0.65237 1.41707 1.46001 1.51887 1.55426 1.68956 2.30727 2.55674 2.57864 2.95351 3.43738 3.67662 3.81938 3.86381 3.99999 4.02561 4.05819 4.25211 4.32560 4.36429 4.37962 4.40496 4.44369 4.45411 4.58292 4.60782 4.65016 4.67920 4.76649 4.81832 4.84584 4.93306 5.11750 5.12338 5.19728 5.45070 5.57181 5.61710 5.62327 5.74390 6.01255 6.32025 6.57927 6.65022 7.22979 7.42437 8.08832 8.38024 9.33685 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010040 B = 0.003873 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2788.157779 B = 7227.521141 C = 8524.327452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.328 6.328 3 C 0.127 3.873 4 C -0.217 4.217 5 C -0.089 4.089 6 C -0.166 4.166 7 C -0.095 4.095 8 C -0.125 4.125 9 C 0.215 3.785 10 H 0.082 0.918 11 C 0.122 3.878 12 N -0.691 5.691 13 C 0.525 3.475 14 O -0.574 6.574 15 C -0.075 4.075 16 H 0.130 0.870 17 C -0.136 4.136 18 S -0.255 6.255 19 C -0.122 4.122 20 N -0.705 5.705 21 C -0.203 4.203 22 H 0.061 0.939 23 C -0.059 4.059 24 N -0.957 5.957 25 Si 0.941 3.059 26 H -0.279 1.279 27 H -0.298 1.298 28 H -0.296 1.296 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.052 0.948 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.139 0.861 35 H 0.121 0.879 36 H 0.047 0.953 37 H 0.065 0.935 38 H 0.409 0.591 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.094 0.906 42 H 0.117 0.883 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.379 0.621 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.864 -0.952 -11.269 11.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.241 6.241 3 C 0.081 3.919 4 C -0.236 4.236 5 C -0.107 4.107 6 C -0.185 4.185 7 C -0.114 4.114 8 C -0.128 4.128 9 C 0.106 3.894 10 H 0.100 0.900 11 C -0.004 4.004 12 N -0.341 5.341 13 C 0.310 3.690 14 O -0.454 6.454 15 C -0.207 4.207 16 H 0.148 0.852 17 C -0.195 4.195 18 S -0.030 6.030 19 C -0.290 4.290 20 N -0.344 5.344 21 C -0.335 4.335 22 H 0.079 0.921 23 C -0.252 4.252 24 N -0.608 5.608 25 Si 0.773 3.227 26 H -0.204 1.204 27 H -0.226 1.226 28 H -0.223 1.223 29 H 0.089 0.911 30 H 0.129 0.871 31 H 0.070 0.930 32 H 0.164 0.836 33 H 0.168 0.832 34 H 0.157 0.843 35 H 0.139 0.861 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.245 0.755 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.113 0.887 42 H 0.135 0.865 43 H 0.107 0.893 44 H 0.110 0.890 45 H 0.212 0.788 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.017 0.579 -11.969 11.983 hybrid contribution -0.669 -1.004 2.174 2.487 sum -0.687 -0.425 -9.794 9.827 Atomic orbital electron populations 1.23228 0.77334 1.04935 1.01691 1.86099 1.22649 1.26942 1.88427 1.18972 0.91754 0.84948 0.96208 1.21450 1.00746 0.92131 1.09272 1.21195 0.94517 0.97612 0.97403 1.21276 0.94549 0.98421 1.04213 1.21128 1.00122 0.91894 0.98210 1.19864 0.91619 0.96540 1.04793 1.19197 0.90619 0.91811 0.87808 0.89990 1.21765 0.92152 0.86990 0.99541 1.45617 1.07750 1.14002 1.66718 1.20116 0.82569 0.89583 0.76734 1.90667 1.73036 1.32824 1.48893 1.23227 0.96773 0.99799 1.00861 0.85196 1.21937 1.02866 1.03436 0.91272 1.87498 1.25263 1.22899 1.67372 1.23593 1.03974 0.94796 1.06637 1.42327 1.73286 1.17117 1.01626 1.19189 1.31454 0.94894 0.87973 0.92086 1.25108 1.03834 0.96905 0.99308 1.69755 1.55788 1.12484 1.22783 0.85551 0.77333 0.78404 0.81441 1.20399 1.22596 1.22318 0.91142 0.87135 0.92951 0.83638 0.83211 0.84349 0.86093 0.93501 0.91689 0.75491 0.92639 0.91519 0.88717 0.86488 0.89317 0.89016 0.78831 0.94393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.81 113.37 1.11 1.63 16 2 O -0.33 -10.93 9.82 -92.47 -0.91 -11.84 16 3 C 0.13 4.37 6.66 22.51 0.15 4.52 16 4 C -0.22 -6.18 9.04 22.37 0.20 -5.97 16 5 C -0.09 -2.34 10.04 22.25 0.22 -2.12 16 6 C -0.17 -4.84 10.04 22.28 0.22 -4.62 16 7 C -0.09 -3.27 8.80 22.25 0.20 -3.07 16 8 C -0.12 -4.58 4.74 -19.77 -0.09 -4.68 16 9 C 0.22 8.08 2.69 44.25 0.12 8.20 16 10 H 0.08 2.88 7.99 -2.39 -0.02 2.86 16 11 C 0.12 4.50 3.97 86.38 0.34 4.84 16 12 N -0.69 -24.20 5.39 -463.08 -2.49 -26.69 16 13 C 0.52 18.89 7.00 87.66 0.61 19.51 16 14 O -0.57 -24.90 16.04 -3.03 -0.05 -24.94 16 15 C -0.08 -2.10 3.18 29.85 0.09 -2.00 16 16 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 17 C -0.14 -3.67 9.08 71.98 0.65 -3.01 16 18 S -0.26 -7.02 21.04 -56.49 -1.19 -8.21 16 19 C -0.12 -1.96 10.45 113.37 1.19 -0.78 16 20 N -0.71 -31.82 4.72 -326.51 -1.54 -33.36 16 21 C -0.20 -10.46 8.79 84.03 0.74 -9.72 16 22 H 0.06 3.24 7.06 -2.91 -0.02 3.22 16 23 C -0.06 -3.22 5.50 84.86 0.47 -2.75 16 24 N -0.96 -54.61 13.06 21.65 0.28 -54.32 16 25 Si 0.94 45.95 29.55 68.60 2.03 47.98 16 26 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 27 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 28 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 29 H 0.07 1.26 7.66 -2.39 -0.02 1.24 16 30 H 0.11 2.11 8.14 -2.39 -0.02 2.10 16 31 H 0.05 1.17 7.66 -2.39 -0.02 1.15 16 32 H 0.15 3.25 6.30 -2.91 -0.02 3.24 16 33 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 34 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 35 H 0.12 4.24 5.83 -2.91 -0.02 4.22 16 36 H 0.05 1.98 5.89 -2.39 -0.01 1.96 16 37 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.41 13.54 8.14 -92.71 -0.75 12.78 16 39 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 40 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.09 1.93 6.92 -2.39 -0.02 1.91 16 42 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.09 1.26 7.14 -2.39 -0.02 1.25 16 44 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.38 18.40 8.04 -92.71 -0.75 17.65 16 46 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -69.34 390.81 1.86 -67.48 By element: Atomic # 1 Polarization: 44.43 SS G_CDS: -0.49 Total: 43.93 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 6.23 Total: -0.02 kcal Atomic # 7 Polarization: -110.62 SS G_CDS: -3.75 Total: -114.37 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -0.96 Total: -36.78 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Atomic # 16 Polarization: -7.02 SS G_CDS: -1.19 Total: -8.21 kcal Total: -69.34 1.86 -67.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198555301.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.867 kcal (2) G-P(sol) polarization free energy of solvation -69.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds