Wall clock time and date at job start Tue Mar 31 2020 20:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47604 * 2 1 4 4 C 1.50698 * 109.47363 * 240.00023 * 2 1 3 5 5 O 1.21282 * 120.00139 * 252.30619 * 4 2 1 6 6 N 1.34783 * 119.99992 * 72.29613 * 4 2 1 7 7 C 1.47502 * 118.75416 * 5.67987 * 6 4 2 8 8 C 1.53206 * 111.23286 * 221.50592 * 7 6 4 9 9 C 1.51528 * 109.43382 * 40.26612 * 8 7 6 10 10 O 1.42161 * 108.76379 * 268.50464 * 9 8 7 11 11 C 1.38012 * 119.43522 * 87.21531 * 10 9 8 12 12 H 1.08998 * 109.47089 * 56.57451 * 11 10 9 13 13 C 1.53007 * 109.46903 * 176.56880 * 11 10 9 14 14 N 1.46498 * 109.46978 * 300.01136 * 13 11 10 15 15 C 1.36933 * 119.99802 * 179.97438 * 14 13 11 16 16 H 1.07994 * 120.00353 * 0.02562 * 15 14 13 17 17 C 1.38818 * 119.99764 * 180.02562 * 15 14 13 18 18 N 1.31618 * 120.00015 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99840 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46475 * 60.00431 * 19 17 15 21 21 H 1.48498 * 109.46698 * 179.97438 * 19 17 15 22 22 H 1.48490 * 109.47183 * 300.00277 * 19 17 15 23 23 C 1.45125 * 118.75421 * 185.93932 * 6 4 2 24 24 C 1.50697 * 109.47543 * 120.00048 * 2 1 3 25 25 C 1.38427 * 122.54296 * 240.00399 * 24 2 1 26 26 C 1.33380 * 114.92281 * 179.97438 * 25 24 2 27 27 S 1.75888 * 109.59477 * 359.97438 * 26 25 24 28 28 C 1.33392 * 122.53764 * 59.97221 * 24 2 1 29 29 H 1.08995 * 109.46995 * 292.84376 * 1 2 3 30 30 H 1.09001 * 109.46777 * 52.84305 * 1 2 3 31 31 H 1.09000 * 109.46946 * 172.84213 * 1 2 3 32 32 H 1.08999 * 109.17251 * 342.02298 * 7 6 4 33 33 H 1.08996 * 109.16872 * 101.22713 * 7 6 4 34 34 H 1.08997 * 109.60857 * 280.22362 * 8 7 6 35 35 H 1.09008 * 109.42589 * 160.19466 * 8 7 6 36 36 H 1.08997 * 109.59508 * 148.71851 * 9 8 7 37 37 H 1.09001 * 109.70654 * 28.35888 * 9 8 7 38 38 H 1.08999 * 109.46842 * 60.01346 * 13 11 10 39 39 H 1.09000 * 109.47024 * 180.02562 * 13 11 10 40 40 H 0.97004 * 120.00088 * 0.02562 * 14 13 11 41 41 H 0.96998 * 120.00012 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.45647 * 210.72570 * 23 6 4 43 43 H 1.08988 * 109.46316 * 330.70237 * 23 6 4 44 44 H 1.07999 * 122.53623 * 359.97438 * 25 24 2 45 45 H 1.08006 * 125.20423 * 180.02562 * 26 25 24 46 46 H 1.07998 * 125.20320 * 359.97438 * 28 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.5355 -1.8096 -1.1331 6 7 1.9224 -0.1242 -2.4391 7 6 1.4235 1.2619 -2.5128 8 6 0.4485 1.4393 -3.6811 9 6 -0.4507 0.2234 -3.7765 10 8 0.1452 -0.7179 -4.6597 11 6 1.0537 -1.6314 -4.1649 12 1 0.5919 -2.2037 -3.3603 13 6 1.4833 -2.5813 -5.2848 14 7 0.3096 -3.2899 -5.8011 15 6 0.4501 -4.1987 -6.8157 16 1 1.4261 -4.3934 -7.2350 17 6 -0.6621 -4.8698 -7.3053 18 7 -1.8517 -4.6321 -6.7947 19 14 -0.4706 -6.1091 -8.6899 20 1 0.4432 -7.1969 -8.2575 21 1 -1.7979 -6.6832 -9.0274 22 1 0.0952 -5.4329 -9.8847 23 6 2.2939 -0.8827 -3.6193 24 6 2.0324 -0.7104 1.2304 25 6 2.8307 -0.0889 2.1753 26 6 3.1877 -0.8594 3.2039 27 16 2.4973 -2.4649 3.0057 28 6 1.7411 -1.9856 1.4918 29 1 -0.3633 0.3989 0.9470 30 1 -0.3633 0.6207 -0.8191 31 1 -0.3633 -1.0197 -0.1281 32 1 0.9142 1.5090 -1.5813 33 1 2.2666 1.9390 -2.6491 34 1 1.0074 1.5513 -4.6102 35 1 -0.1597 2.3284 -3.5140 36 1 -1.4262 0.5195 -4.1622 37 1 -0.5685 -0.2249 -2.7900 38 1 1.9452 -2.0090 -6.0893 39 1 2.2004 -3.3031 -4.8939 40 1 -0.5671 -3.1147 -5.4248 41 1 -2.6289 -5.1008 -7.1370 42 1 2.6731 -0.2036 -4.3829 43 1 3.0679 -1.6044 -3.3584 44 1 3.1410 0.9417 2.0862 45 1 3.8054 -0.5452 4.0322 46 1 1.1328 -2.6254 0.8698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201396348.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:21 Heat of formation + Delta-G solvation = -20.099895 kcal Electronic energy + Delta-G solvation = -27978.252270 eV Core-core repulsion = 24188.649669 eV Total energy + Delta-G solvation = -3789.602600 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.93104 -39.04974 -37.68978 -35.73241 -34.55636 -33.46664 -32.70924 -30.89036 -29.24311 -28.58378 -26.71384 -25.70135 -25.02238 -23.35747 -22.26625 -21.56711 -20.92506 -19.54938 -18.54128 -17.98151 -17.31701 -17.03228 -16.52273 -16.34852 -15.69755 -15.39544 -14.92174 -14.60262 -14.40517 -14.21690 -13.71522 -13.51900 -13.19358 -13.11645 -13.05592 -12.84254 -12.71272 -12.60907 -12.34649 -12.26420 -11.96294 -11.89802 -11.70207 -11.60337 -11.26290 -10.93072 -10.84487 -10.76959 -10.74058 -10.24362 -10.02340 -9.72791 -9.61990 -9.37168 -8.90239 -8.79958 -8.55138 -8.52590 -6.82003 -5.66935 -2.94907 0.90123 1.52871 1.85303 2.44107 2.53769 2.97074 3.50274 3.53770 3.55299 3.97565 4.29075 4.40989 4.58867 4.65223 4.70957 4.77709 4.89684 4.94282 4.98594 5.12817 5.25692 5.26662 5.34961 5.43124 5.44890 5.46610 5.50824 5.52656 5.62685 5.66227 5.81104 5.85103 5.86172 6.00368 6.01814 6.11808 6.21516 6.31080 6.36433 6.53049 6.68821 6.81074 7.22578 7.76576 8.02608 8.11362 8.51538 9.62961 10.21527 10.57776 11.55978 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014350 B = 0.002832 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.715013 B = 9885.405230 C =11066.669102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.049 4.049 3 H 0.100 0.900 4 C 0.512 3.488 5 O -0.522 6.522 6 N -0.608 5.608 7 C 0.099 3.901 8 C -0.167 4.167 9 C 0.072 3.928 10 O -0.367 6.367 11 C 0.090 3.910 12 H 0.049 0.951 13 C 0.166 3.834 14 N -0.725 5.725 15 C -0.237 4.237 16 H 0.069 0.931 17 C -0.015 4.015 18 N -0.933 5.933 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C 0.080 3.920 24 C -0.102 4.102 25 C -0.124 4.124 26 C -0.221 4.221 27 S 0.093 5.907 28 C -0.162 4.162 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.048 0.952 38 H 0.026 0.974 39 H 0.034 0.966 40 H 0.387 0.613 41 H 0.254 0.746 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.138 0.862 45 H 0.162 0.838 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.029 17.190 20.221 27.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.073 4.073 3 H 0.118 0.882 4 C 0.299 3.701 5 O -0.397 6.397 6 N -0.342 5.342 7 C -0.024 4.024 8 C -0.206 4.206 9 C -0.005 4.005 10 O -0.285 6.285 11 C 0.030 3.970 12 H 0.067 0.933 13 C 0.038 3.962 14 N -0.369 5.369 15 C -0.369 4.369 16 H 0.087 0.913 17 C -0.210 4.210 18 N -0.582 5.582 19 Si 0.738 3.262 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.043 4.043 24 C -0.114 4.114 25 C -0.155 4.155 26 C -0.357 4.357 27 S 0.356 5.644 28 C -0.298 4.298 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.066 0.934 38 H 0.044 0.956 39 H 0.052 0.948 40 H 0.221 0.779 41 H 0.064 0.936 42 H 0.101 0.899 43 H 0.112 0.888 44 H 0.155 0.845 45 H 0.180 0.820 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 7.390 15.144 20.815 26.781 hybrid contribution -0.104 0.831 -1.211 1.472 sum 7.286 15.975 19.604 26.317 Atomic orbital electron populations 1.21919 0.91797 1.03486 1.03060 1.19973 0.97587 0.99626 0.90074 0.88193 1.20576 0.78724 0.86345 0.84455 1.90730 1.42898 1.20306 1.85783 1.47872 1.65553 1.14359 1.06383 1.22059 0.97823 0.82131 1.00338 1.22454 0.98789 1.00028 0.99298 1.22156 0.95703 0.88310 0.94360 1.86447 1.58590 1.45773 1.37643 1.22261 0.88256 0.89183 0.97297 0.93315 1.20615 0.91594 0.91471 0.92551 1.42198 1.04839 1.47491 1.42403 1.19192 0.93633 1.14194 1.09834 0.91265 1.24730 0.95386 1.00714 1.00213 1.69666 0.97956 1.45735 1.44813 0.86261 0.76460 0.81284 0.82152 1.21318 1.21741 1.21311 1.22427 0.99161 0.96300 0.86460 1.18330 1.01834 0.94250 0.97025 1.19990 1.00064 1.01155 0.94261 1.25485 1.08693 0.97004 1.04491 1.84312 1.47616 1.13027 1.19409 1.25473 1.05808 0.98967 0.99576 0.90920 0.91217 0.91610 0.89422 0.91554 0.89882 0.89682 0.89337 0.93369 0.95605 0.94844 0.77882 0.93587 0.89933 0.88785 0.84472 0.82026 0.81821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 8.56 37.16 0.32 -0.88 16 2 C -0.05 -0.46 2.10 -92.93 -0.20 -0.66 16 3 H 0.10 0.71 7.01 -51.93 -0.36 0.35 16 4 C 0.51 6.71 6.81 -10.98 -0.07 6.63 16 5 O -0.52 -8.94 14.37 5.56 0.08 -8.86 16 6 N -0.61 -7.30 2.20 -172.70 -0.38 -7.68 16 7 C 0.10 0.82 5.51 -3.39 -0.02 0.81 16 8 C -0.17 -1.53 5.78 -27.37 -0.16 -1.69 16 9 C 0.07 0.91 6.37 36.41 0.23 1.14 16 10 O -0.37 -6.49 9.18 -26.53 -0.24 -6.74 16 11 C 0.09 1.61 2.73 -25.78 -0.07 1.54 16 12 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 13 C 0.17 3.58 5.95 -4.04 -0.02 3.56 16 14 N -0.73 -19.57 5.49 -59.91 -0.33 -19.90 16 15 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 16 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 17 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 18 N -0.93 -29.22 13.06 55.49 0.72 -28.49 16 19 Si 0.91 23.10 29.55 -169.99 -5.02 18.08 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 21 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 C 0.08 1.16 4.91 -3.83 -0.02 1.14 16 24 C -0.10 -1.10 4.40 -106.25 -0.47 -1.57 16 25 C -0.12 -1.14 9.92 -41.21 -0.41 -1.55 16 26 C -0.22 -1.97 11.23 29.03 0.33 -1.64 16 27 S 0.09 0.94 23.34 -107.50 -2.51 -1.57 16 28 C -0.16 -1.91 9.21 29.04 0.27 -1.65 16 29 H 0.07 0.50 8.13 -51.93 -0.42 0.07 16 30 H 0.07 0.49 5.23 -51.93 -0.27 0.22 16 31 H 0.06 0.65 8.04 -51.93 -0.42 0.23 16 32 H 0.09 0.55 4.10 -51.93 -0.21 0.34 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.86 8.01 -51.93 -0.42 0.45 16 35 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.05 0.60 6.44 -51.93 -0.33 0.26 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.39 11.10 7.53 -40.82 -0.31 10.79 16 41 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 42 H 0.08 1.09 8.12 -51.93 -0.42 0.67 16 43 H 0.09 1.47 7.20 -51.94 -0.37 1.10 16 44 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 45 H 0.16 1.03 8.06 -52.48 -0.42 0.61 16 46 H 0.16 2.06 7.91 -52.49 -0.42 1.65 16 LS Contribution 376.32 15.07 5.67 5.67 Total: -1.00 -35.11 376.32 -9.44 -44.54 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -6.89 Total: 7.39 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -0.54 Total: -2.44 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: 0.02 Total: -56.08 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.16 Total: -15.60 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.08 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.51 Total: -1.57 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.11 -9.44 -44.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201396348.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.445 kcal (2) G-P(sol) polarization free energy of solvation -35.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds