Wall clock time and date at job start Tue Mar 31 2020 20:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47604 * 2 1 4 4 C 1.50698 * 109.47363 * 240.00023 * 2 1 3 5 5 O 1.21282 * 120.00139 * 252.30619 * 4 2 1 6 6 N 1.34783 * 119.99992 * 72.29613 * 4 2 1 7 7 C 1.47502 * 118.75416 * 5.67987 * 6 4 2 8 8 C 1.53206 * 111.23286 * 221.50592 * 7 6 4 9 9 C 1.51528 * 109.43382 * 40.26612 * 8 7 6 10 10 O 1.42161 * 108.76379 * 268.50464 * 9 8 7 11 11 C 1.38012 * 119.43522 * 87.21531 * 10 9 8 12 12 H 1.08998 * 109.47089 * 56.57451 * 11 10 9 13 13 C 1.53007 * 109.46903 * 176.56880 * 11 10 9 14 14 N 1.46498 * 109.46978 * 300.01136 * 13 11 10 15 15 C 1.36933 * 119.99802 * 179.97438 * 14 13 11 16 16 H 1.07994 * 120.00353 * 0.02562 * 15 14 13 17 17 C 1.38818 * 119.99764 * 180.02562 * 15 14 13 18 18 N 1.31618 * 120.00015 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99840 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46475 * 60.00431 * 19 17 15 21 21 H 1.48498 * 109.46698 * 179.97438 * 19 17 15 22 22 H 1.48490 * 109.47183 * 300.00277 * 19 17 15 23 23 C 1.45125 * 118.75421 * 185.93932 * 6 4 2 24 24 C 1.50697 * 109.47543 * 120.00048 * 2 1 3 25 25 C 1.38427 * 122.54296 * 240.00399 * 24 2 1 26 26 C 1.33380 * 114.92281 * 179.97438 * 25 24 2 27 27 S 1.75888 * 109.59477 * 359.97438 * 26 25 24 28 28 C 1.33392 * 122.53764 * 59.97221 * 24 2 1 29 29 H 1.08995 * 109.46995 * 292.84376 * 1 2 3 30 30 H 1.09001 * 109.46777 * 52.84305 * 1 2 3 31 31 H 1.09000 * 109.46946 * 172.84213 * 1 2 3 32 32 H 1.08999 * 109.17251 * 342.02298 * 7 6 4 33 33 H 1.08996 * 109.16872 * 101.22713 * 7 6 4 34 34 H 1.08997 * 109.60857 * 280.22362 * 8 7 6 35 35 H 1.09008 * 109.42589 * 160.19466 * 8 7 6 36 36 H 1.08997 * 109.59508 * 148.71851 * 9 8 7 37 37 H 1.09001 * 109.70654 * 28.35888 * 9 8 7 38 38 H 1.08999 * 109.46842 * 60.01346 * 13 11 10 39 39 H 1.09000 * 109.47024 * 180.02562 * 13 11 10 40 40 H 0.97004 * 120.00088 * 0.02562 * 14 13 11 41 41 H 0.96998 * 120.00012 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.45647 * 210.72570 * 23 6 4 43 43 H 1.08988 * 109.46316 * 330.70237 * 23 6 4 44 44 H 1.07999 * 122.53623 * 359.97438 * 25 24 2 45 45 H 1.08006 * 125.20423 * 180.02562 * 26 25 24 46 46 H 1.07998 * 125.20320 * 359.97438 * 28 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.5355 -1.8096 -1.1331 6 7 1.9224 -0.1242 -2.4391 7 6 1.4235 1.2619 -2.5128 8 6 0.4485 1.4393 -3.6811 9 6 -0.4507 0.2234 -3.7765 10 8 0.1452 -0.7179 -4.6597 11 6 1.0537 -1.6314 -4.1649 12 1 0.5919 -2.2037 -3.3603 13 6 1.4833 -2.5813 -5.2848 14 7 0.3096 -3.2899 -5.8011 15 6 0.4501 -4.1987 -6.8157 16 1 1.4261 -4.3934 -7.2350 17 6 -0.6621 -4.8698 -7.3053 18 7 -1.8517 -4.6321 -6.7947 19 14 -0.4706 -6.1091 -8.6899 20 1 0.4432 -7.1969 -8.2575 21 1 -1.7979 -6.6832 -9.0274 22 1 0.0952 -5.4329 -9.8847 23 6 2.2939 -0.8827 -3.6193 24 6 2.0324 -0.7104 1.2304 25 6 2.8307 -0.0889 2.1753 26 6 3.1877 -0.8594 3.2039 27 16 2.4973 -2.4649 3.0057 28 6 1.7411 -1.9856 1.4918 29 1 -0.3633 0.3989 0.9470 30 1 -0.3633 0.6207 -0.8191 31 1 -0.3633 -1.0197 -0.1281 32 1 0.9142 1.5090 -1.5813 33 1 2.2666 1.9390 -2.6491 34 1 1.0074 1.5513 -4.6102 35 1 -0.1597 2.3284 -3.5140 36 1 -1.4262 0.5195 -4.1622 37 1 -0.5685 -0.2249 -2.7900 38 1 1.9452 -2.0090 -6.0893 39 1 2.2004 -3.3031 -4.8939 40 1 -0.5671 -3.1147 -5.4248 41 1 -2.6289 -5.1008 -7.1370 42 1 2.6731 -0.2036 -4.3829 43 1 3.0679 -1.6044 -3.3584 44 1 3.1410 0.9417 2.0862 45 1 3.8054 -0.5452 4.0322 46 1 1.1328 -2.6254 0.8698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201396348.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:20 Heat of formation + Delta-G solvation = -43.076775 kcal Electronic energy + Delta-G solvation = -27979.248622 eV Core-core repulsion = 24188.649669 eV Total energy + Delta-G solvation = -3790.598953 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.93536 -40.13800 -38.62353 -36.97211 -36.24560 -34.53783 -33.90004 -32.66453 -30.40018 -29.64306 -27.87163 -26.78335 -26.18886 -24.85495 -23.55091 -22.61014 -22.24158 -20.43683 -19.36921 -19.27172 -18.78309 -18.20019 -17.68605 -17.51734 -16.81815 -16.59217 -16.24742 -15.91680 -15.48628 -15.21950 -15.14776 -14.83006 -14.62252 -14.34150 -13.98584 -13.91809 -13.74408 -13.58445 -13.41941 -13.20133 -13.12509 -13.08127 -12.74434 -12.64555 -12.59214 -12.46187 -12.27711 -12.13835 -11.91462 -11.80588 -11.59750 -11.43209 -10.98118 -10.74555 -10.52819 -9.66491 -9.62491 -9.33372 -9.02769 -7.95176 -5.25096 0.13380 0.76261 1.11011 1.45257 1.50064 1.54258 1.56148 1.65777 2.08856 2.55378 2.73092 3.37838 3.45954 3.64176 3.70006 3.87173 3.97963 4.01941 4.08813 4.12051 4.21586 4.26230 4.31167 4.38316 4.45153 4.51847 4.53008 4.68372 4.69846 4.72638 4.79022 4.84493 4.87068 4.88656 5.08113 5.13397 5.14454 5.17129 5.26208 5.45419 5.48294 5.55169 5.57264 6.25099 6.29385 6.76237 7.13011 7.31563 8.05678 8.31439 9.28494 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014350 B = 0.002832 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.715013 B = 9885.405230 C =11066.669102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.042 4.042 3 H 0.139 0.861 4 C 0.505 3.495 5 O -0.573 6.573 6 N -0.606 5.606 7 C 0.093 3.907 8 C -0.157 4.157 9 C 0.060 3.940 10 O -0.397 6.397 11 C 0.108 3.892 12 H 0.018 0.982 13 C 0.162 3.838 14 N -0.739 5.739 15 C -0.250 4.250 16 H 0.077 0.923 17 C -0.077 4.077 18 N -0.970 5.970 19 Si 0.979 3.021 20 H -0.278 1.278 21 H -0.293 1.293 22 H -0.275 1.275 23 C 0.094 3.906 24 C -0.102 4.102 25 C -0.131 4.131 26 C -0.212 4.212 27 S 0.075 5.925 28 C -0.195 4.195 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.037 0.963 32 H 0.116 0.884 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.123 0.877 36 H 0.093 0.907 37 H 0.047 0.953 38 H 0.032 0.968 39 H 0.031 0.969 40 H 0.374 0.626 41 H 0.252 0.748 42 H 0.101 0.899 43 H 0.077 0.923 44 H 0.170 0.830 45 H 0.191 0.809 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.100 20.396 20.946 30.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.065 4.065 3 H 0.157 0.843 4 C 0.294 3.706 5 O -0.452 6.452 6 N -0.338 5.338 7 C -0.027 4.027 8 C -0.195 4.195 9 C -0.015 4.015 10 O -0.316 6.316 11 C 0.048 3.952 12 H 0.036 0.964 13 C 0.035 3.965 14 N -0.382 5.382 15 C -0.382 4.382 16 H 0.095 0.905 17 C -0.269 4.269 18 N -0.621 5.621 19 Si 0.807 3.193 20 H -0.204 1.204 21 H -0.219 1.219 22 H -0.201 1.201 23 C -0.031 4.031 24 C -0.115 4.115 25 C -0.161 4.161 26 C -0.347 4.347 27 S 0.339 5.661 28 C -0.331 4.331 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.056 0.944 32 H 0.134 0.866 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.141 0.859 36 H 0.111 0.889 37 H 0.066 0.934 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.206 0.794 41 H 0.060 0.940 42 H 0.119 0.881 43 H 0.095 0.905 44 H 0.187 0.813 45 H 0.208 0.792 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 8.488 18.405 21.551 29.584 hybrid contribution -0.447 -0.122 -1.401 1.476 sum 8.041 18.283 20.150 28.371 Atomic orbital electron populations 1.21920 0.90860 1.02305 1.04820 1.20068 0.98161 1.00770 0.87520 0.84313 1.21308 0.77780 0.85865 0.85645 1.90713 1.45213 1.22634 1.86602 1.47980 1.65076 1.15615 1.05161 1.22418 0.98891 0.80052 1.01374 1.22381 0.98508 0.99309 0.99283 1.22480 0.96723 0.88781 0.93539 1.86365 1.59001 1.46551 1.39649 1.21840 0.89794 0.89025 0.94576 0.96450 1.20752 0.89955 0.91964 0.93828 1.42391 1.05714 1.47840 1.42220 1.19644 0.94031 1.14396 1.10122 0.90542 1.25649 0.95066 1.03062 1.03124 1.69843 0.98655 1.47083 1.46479 0.85132 0.76331 0.78737 0.79070 1.20391 1.21890 1.20077 1.22068 0.96673 0.96406 0.87908 1.18655 1.01395 0.93872 0.97591 1.20288 0.99570 1.02620 0.93619 1.25880 1.08082 0.95548 1.05194 1.84310 1.48061 1.14896 1.18843 1.25417 1.07326 0.99803 1.00553 0.88931 0.89517 0.94416 0.86624 0.88833 0.90855 0.85857 0.88857 0.93429 0.94987 0.95126 0.79416 0.93962 0.88114 0.90489 0.81274 0.79212 0.84208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.56 71.98 0.62 -1.45 16 2 C -0.04 -0.70 2.10 -12.29 -0.03 -0.73 16 3 H 0.14 1.27 7.01 -2.38 -0.02 1.25 16 4 C 0.51 12.94 6.81 87.66 0.60 13.54 16 5 O -0.57 -20.48 14.37 -3.04 -0.04 -20.52 16 6 N -0.61 -13.64 2.20 -818.70 -1.80 -15.45 16 7 C 0.09 1.18 5.51 86.26 0.47 1.65 16 8 C -0.16 -2.33 5.78 30.18 0.17 -2.16 16 9 C 0.06 1.48 6.37 71.50 0.46 1.93 16 10 O -0.40 -14.27 9.18 -117.83 -1.08 -15.36 16 11 C 0.11 4.02 2.73 31.21 0.09 4.10 16 12 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 13 C 0.16 7.27 5.95 86.38 0.51 7.79 16 14 N -0.74 -41.46 5.49 -343.45 -1.88 -43.35 16 15 C -0.25 -14.97 9.99 84.04 0.84 -14.13 16 16 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 17 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 18 N -0.97 -62.40 13.06 21.65 0.28 -62.12 16 19 Si 0.98 48.11 29.55 68.60 2.03 50.13 16 20 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 21 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 22 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 23 C 0.09 2.72 4.91 87.25 0.43 3.15 16 24 C -0.10 -2.07 4.40 -20.92 -0.09 -2.17 16 25 C -0.13 -2.04 9.92 21.22 0.21 -1.83 16 26 C -0.21 -3.29 11.23 66.72 0.75 -2.54 16 27 S 0.08 1.54 23.34 -56.49 -1.32 0.22 16 28 C -0.20 -4.80 9.21 66.72 0.61 -4.19 16 29 H 0.09 1.01 8.13 -2.39 -0.02 0.99 16 30 H 0.09 0.94 5.23 -2.39 -0.01 0.93 16 31 H 0.04 0.77 8.04 -2.39 -0.02 0.75 16 32 H 0.12 0.84 4.10 -2.39 -0.01 0.83 16 33 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 1.30 8.01 -2.39 -0.02 1.28 16 35 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.05 1.15 6.44 -2.39 -0.02 1.14 16 38 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.37 22.53 7.53 -92.71 -0.70 21.83 16 41 H 0.25 15.58 8.31 -92.71 -0.77 14.80 16 42 H 0.10 2.53 8.12 -2.39 -0.02 2.51 16 43 H 0.08 2.49 7.20 -2.39 -0.02 2.48 16 44 H 0.17 1.51 8.06 -2.91 -0.02 1.48 16 45 H 0.19 1.77 8.06 -2.91 -0.02 1.75 16 46 H 0.14 4.00 7.91 -2.91 -0.02 3.98 16 Total: -1.00 -80.83 376.32 2.58 -78.25 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: 0.29 Total: 29.42 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: 6.11 Total: -1.23 kcal Atomic # 7 Polarization: -117.50 SS G_CDS: -3.41 Total: -120.91 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -1.13 Total: -35.88 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.13 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -1.32 Total: 0.22 kcal Total: -80.83 2.58 -78.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201396348.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.169 kcal (2) G-P(sol) polarization free energy of solvation -80.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds