Wall clock time and date at job start Tue Mar 31 2020 20:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47201 * 2 1 4 4 C 1.50699 * 109.47326 * 120.00374 * 2 1 3 5 5 O 1.21283 * 120.00338 * 119.99833 * 4 2 1 6 6 N 1.34775 * 119.99933 * 299.99705 * 4 2 1 7 7 C 1.47503 * 118.75764 * 359.73415 * 6 4 2 8 8 C 1.53202 * 111.24059 * 221.50927 * 7 6 4 9 9 C 1.51533 * 109.42968 * 40.26213 * 8 7 6 10 10 O 1.42157 * 108.76715 * 268.50852 * 9 8 7 11 11 C 1.38015 * 119.43692 * 87.21839 * 10 9 8 12 12 H 1.09000 * 109.47334 * 56.57052 * 11 10 9 13 13 C 1.53000 * 109.47026 * 176.57396 * 11 10 9 14 14 N 1.46507 * 109.46603 * 300.00928 * 13 11 10 15 15 C 1.36938 * 120.00082 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99831 * 359.97438 * 15 14 13 17 17 C 1.38810 * 120.00128 * 179.97438 * 15 14 13 18 18 N 1.31624 * 119.99936 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00001 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46577 * 60.00805 * 19 17 15 21 21 H 1.48503 * 109.47065 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47252 * 300.00727 * 19 17 15 23 23 C 1.45121 * 118.75657 * 179.97438 * 6 4 2 24 24 C 1.50702 * 109.46908 * 240.00272 * 2 1 3 25 25 C 1.38423 * 122.54092 * 120.00199 * 24 2 1 26 26 C 1.33391 * 114.92048 * 180.02562 * 25 24 2 27 27 S 1.75886 * 109.59495 * 0.24183 * 26 25 24 28 28 C 1.33390 * 122.53930 * 300.02258 * 24 2 1 29 29 H 1.09005 * 109.46716 * 300.00008 * 1 2 3 30 30 H 1.08998 * 109.47266 * 59.99628 * 1 2 3 31 31 H 1.08995 * 109.47201 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.16464 * 342.02719 * 7 6 4 33 33 H 1.09004 * 109.16937 * 101.23116 * 7 6 4 34 34 H 1.09004 * 109.60770 * 280.22632 * 8 7 6 35 35 H 1.08996 * 109.43192 * 160.18752 * 8 7 6 36 36 H 1.09002 * 109.59121 * 148.72445 * 9 8 7 37 37 H 1.09001 * 109.70636 * 28.36023 * 9 8 7 38 38 H 1.08997 * 109.47495 * 60.00180 * 13 11 10 39 39 H 1.08998 * 109.47277 * 180.02562 * 13 11 10 40 40 H 0.97000 * 119.99915 * 359.97438 * 14 13 11 41 41 H 0.96994 * 119.99845 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.46310 * 210.72764 * 23 6 4 43 43 H 1.08999 * 109.46360 * 330.70528 * 23 6 4 44 44 H 1.07995 * 122.53847 * 0.03621 * 25 24 2 45 45 H 1.08002 * 125.19887 * 179.97438 * 26 25 24 46 46 H 1.07998 * 125.20164 * 0.02562 * 28 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7297 -1.6966 1.1191 6 7 1.7069 -0.2501 2.4545 7 6 0.8623 0.9548 2.5581 8 6 1.3609 1.8886 3.6655 9 6 2.8755 1.9313 3.6449 10 8 3.3733 0.9293 4.5219 11 6 3.5660 -0.3524 4.0476 12 1 4.2365 -0.3250 3.1886 13 6 4.1833 -1.2163 5.1491 14 7 5.4710 -0.6460 5.5530 15 6 6.2121 -1.2532 6.5314 16 1 5.8472 -2.1523 7.0056 17 6 7.4324 -0.7131 6.9136 18 7 7.8768 0.3830 6.3360 19 14 8.4430 -1.5410 8.2488 20 1 8.7793 -2.9250 7.8285 21 1 9.6944 -0.7727 8.4705 22 1 7.6587 -1.5831 9.5090 23 6 2.2049 -0.9554 3.6209 24 6 2.0323 -0.7104 -1.2305 25 6 2.8306 -0.0889 -2.1753 26 6 3.1874 -0.8594 -3.2041 27 16 2.4918 -2.4630 -3.0092 28 6 1.7410 -1.9855 -1.4920 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 0.8797 1.4868 1.6069 33 1 -0.1619 0.6559 2.7813 34 1 1.0212 1.5215 4.6340 35 1 0.9673 2.8913 3.4990 36 1 3.2181 2.9111 3.9777 37 1 3.2348 1.7427 2.6333 38 1 3.5129 -1.2439 6.0080 39 1 4.3360 -2.2285 4.7744 40 1 5.7989 0.1613 5.1268 41 1 8.7293 0.7606 6.6034 42 1 1.4909 -0.8550 4.4384 43 1 2.3346 -2.0104 3.3795 44 1 3.1411 0.9416 -2.0861 45 1 3.8052 -0.5451 -4.0324 46 1 1.1328 -2.6254 -0.8699 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201396349.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:23 Heat of formation + Delta-G solvation = -16.008502 kcal Electronic energy + Delta-G solvation = -27888.481385 eV Core-core repulsion = 24099.056200 eV Total energy + Delta-G solvation = -3789.425184 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.94166 -39.04982 -37.67486 -35.79782 -34.54884 -33.44839 -32.73441 -30.87712 -29.26900 -28.52515 -26.65017 -25.89545 -24.94628 -23.36435 -22.23498 -21.51753 -20.90958 -19.63843 -18.58703 -18.00582 -17.21849 -17.06059 -16.50452 -16.34236 -15.79493 -15.34059 -14.86693 -14.53337 -14.41791 -14.15142 -13.82984 -13.55912 -13.26911 -13.13737 -13.03163 -12.85831 -12.67344 -12.52269 -12.39114 -12.30172 -12.06637 -11.73063 -11.65645 -11.57485 -11.30682 -10.93206 -10.85828 -10.76174 -10.73052 -10.23177 -10.01364 -9.72170 -9.60808 -9.36407 -8.89886 -8.78723 -8.54497 -8.52045 -6.80557 -5.65556 -2.93580 0.90044 1.53204 1.84792 2.44644 2.57117 2.95455 3.51100 3.54481 3.56106 3.98635 4.27910 4.41564 4.57788 4.65022 4.70359 4.74223 4.89657 4.92971 4.96876 5.13663 5.25959 5.29928 5.33266 5.40958 5.42259 5.45174 5.48520 5.50476 5.63212 5.67288 5.75128 5.85747 5.87486 5.99050 6.02123 6.12742 6.20572 6.31128 6.37957 6.52558 6.70227 6.82576 7.22415 7.77510 8.04078 8.12260 8.52897 9.64212 10.23018 10.59247 11.57371 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013527 B = 0.002839 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.473658 B = 9860.139670 C =11094.193300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.050 4.050 3 H 0.103 0.897 4 C 0.510 3.490 5 O -0.520 6.520 6 N -0.608 5.608 7 C 0.102 3.898 8 C -0.169 4.169 9 C 0.073 3.927 10 O -0.367 6.367 11 C 0.089 3.911 12 H 0.051 0.949 13 C 0.166 3.834 14 N -0.725 5.725 15 C -0.237 4.237 16 H 0.069 0.931 17 C -0.015 4.015 18 N -0.933 5.933 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.286 1.286 23 C 0.082 3.918 24 C -0.093 4.093 25 C -0.124 4.124 26 C -0.216 4.216 27 S 0.091 5.909 28 C -0.173 4.173 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.045 0.955 38 H 0.026 0.974 39 H 0.034 0.966 40 H 0.387 0.613 41 H 0.254 0.746 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.139 0.861 45 H 0.163 0.837 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.555 3.039 -18.842 28.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.074 4.074 3 H 0.121 0.879 4 C 0.297 3.703 5 O -0.395 6.395 6 N -0.342 5.342 7 C -0.020 4.020 8 C -0.207 4.207 9 C -0.003 4.003 10 O -0.285 6.285 11 C 0.029 3.971 12 H 0.068 0.932 13 C 0.038 3.962 14 N -0.369 5.369 15 C -0.369 4.369 16 H 0.087 0.913 17 C -0.211 4.211 18 N -0.582 5.582 19 Si 0.739 3.261 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.042 4.042 24 C -0.105 4.105 25 C -0.155 4.155 26 C -0.351 4.351 27 S 0.355 5.645 28 C -0.308 4.308 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.064 0.936 38 H 0.044 0.956 39 H 0.051 0.949 40 H 0.221 0.779 41 H 0.064 0.936 42 H 0.101 0.899 43 H 0.111 0.889 44 H 0.157 0.843 45 H 0.181 0.819 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -20.047 1.077 -19.454 27.955 hybrid contribution 0.624 1.172 1.155 1.760 sum -19.423 2.249 -18.299 26.780 Atomic orbital electron populations 1.22104 0.92097 1.03323 1.03447 1.19967 0.97456 0.99841 0.90095 0.87857 1.20589 0.80357 0.84914 0.84429 1.90750 1.36626 1.26034 1.86115 1.47890 1.51643 1.28613 1.06018 1.22151 0.93814 0.85761 1.00288 1.22487 0.98385 0.99907 0.99949 1.22108 0.91752 0.92248 0.94241 1.86444 1.84467 1.17978 1.39598 1.22272 0.93676 0.83228 0.97908 0.93161 1.20612 0.88666 0.93665 0.93252 1.42203 1.17823 1.31588 1.45327 1.19194 0.99395 1.06465 1.11803 0.91267 1.24732 0.98118 0.97893 1.00317 1.69671 1.21339 1.22051 1.45097 0.86259 0.79607 0.78484 0.81789 1.21311 1.21745 1.21327 1.22427 0.96819 0.97956 0.86994 1.18301 1.01300 0.94148 0.96754 1.20022 0.99906 1.01364 0.94194 1.25497 1.08324 0.96775 1.04545 1.84233 1.47709 1.13507 1.19047 1.25324 1.06524 0.98891 1.00092 0.90636 0.91180 0.91950 0.89504 0.91311 0.89874 0.89660 0.89318 0.93626 0.95633 0.94862 0.77875 0.93593 0.89921 0.88915 0.84334 0.81917 0.82249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 8.54 37.16 0.32 -0.71 16 2 C -0.05 -0.47 2.15 -92.92 -0.20 -0.67 16 3 H 0.10 0.82 7.29 -51.93 -0.38 0.44 16 4 C 0.51 6.68 6.94 -10.99 -0.08 6.61 16 5 O -0.52 -9.04 14.66 5.56 0.08 -8.96 16 6 N -0.61 -7.24 2.20 -172.66 -0.38 -7.62 16 7 C 0.10 0.83 4.43 -3.39 -0.02 0.82 16 8 C -0.17 -1.55 5.78 -27.37 -0.16 -1.71 16 9 C 0.07 0.96 6.37 36.42 0.23 1.19 16 10 O -0.37 -6.61 9.18 -26.54 -0.24 -6.86 16 11 C 0.09 1.63 2.74 -25.75 -0.07 1.56 16 12 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 13 C 0.17 3.63 5.95 -4.04 -0.02 3.60 16 14 N -0.73 -19.80 5.49 -59.91 -0.33 -20.13 16 15 C -0.24 -7.00 9.99 -15.06 -0.15 -7.15 16 16 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 17 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 18 N -0.93 -29.44 13.06 55.49 0.72 -28.71 16 19 Si 0.91 23.22 29.55 -169.99 -5.02 18.20 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 C 0.08 1.17 4.87 -3.80 -0.02 1.16 16 24 C -0.09 -1.01 4.28 -106.25 -0.46 -1.46 16 25 C -0.12 -1.25 9.92 -41.21 -0.41 -1.66 16 26 C -0.22 -2.06 11.23 29.04 0.33 -1.74 16 27 S 0.09 0.92 23.34 -107.50 -2.51 -1.59 16 28 C -0.17 -1.93 9.26 29.04 0.27 -1.66 16 29 H 0.07 0.40 4.62 -51.93 -0.24 0.16 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.46 7.74 -51.93 -0.40 0.06 16 32 H 0.09 0.53 4.97 -51.93 -0.26 0.27 16 33 H 0.07 0.45 7.54 -51.93 -0.39 0.06 16 34 H 0.08 0.86 8.01 -51.93 -0.42 0.44 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.05 0.60 7.41 -51.93 -0.38 0.21 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.39 11.25 7.53 -40.82 -0.31 10.94 16 41 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 42 H 0.08 1.07 8.12 -51.93 -0.42 0.65 16 43 H 0.09 1.43 7.27 -51.93 -0.38 1.05 16 44 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 45 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 46 H 0.16 1.73 7.94 -52.49 -0.42 1.31 16 LS Contribution 376.30 15.07 5.67 5.67 Total: -1.00 -35.71 376.30 -9.46 -45.17 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -6.92 Total: 7.19 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -0.53 Total: -2.36 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.02 Total: -56.46 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.16 Total: -15.82 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.02 Total: 18.20 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.51 Total: -1.59 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.71 -9.46 -45.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201396349.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.162 kcal (2) G-P(sol) polarization free energy of solvation -35.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds