Wall clock time and date at job start Tue Mar 31 2020 20:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47201 * 2 1 4 4 C 1.50699 * 109.47326 * 120.00374 * 2 1 3 5 5 O 1.21283 * 120.00338 * 119.99833 * 4 2 1 6 6 N 1.34775 * 119.99933 * 299.99705 * 4 2 1 7 7 C 1.47503 * 118.75764 * 359.73415 * 6 4 2 8 8 C 1.53202 * 111.24059 * 221.50927 * 7 6 4 9 9 C 1.51533 * 109.42968 * 40.26213 * 8 7 6 10 10 O 1.42157 * 108.76715 * 268.50852 * 9 8 7 11 11 C 1.38015 * 119.43692 * 87.21839 * 10 9 8 12 12 H 1.09000 * 109.47334 * 56.57052 * 11 10 9 13 13 C 1.53000 * 109.47026 * 176.57396 * 11 10 9 14 14 N 1.46507 * 109.46603 * 300.00928 * 13 11 10 15 15 C 1.36938 * 120.00082 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99831 * 359.97438 * 15 14 13 17 17 C 1.38810 * 120.00128 * 179.97438 * 15 14 13 18 18 N 1.31624 * 119.99936 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00001 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46577 * 60.00805 * 19 17 15 21 21 H 1.48503 * 109.47065 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47252 * 300.00727 * 19 17 15 23 23 C 1.45121 * 118.75657 * 179.97438 * 6 4 2 24 24 C 1.50702 * 109.46908 * 240.00272 * 2 1 3 25 25 C 1.38423 * 122.54092 * 120.00199 * 24 2 1 26 26 C 1.33391 * 114.92048 * 180.02562 * 25 24 2 27 27 S 1.75886 * 109.59495 * 0.24183 * 26 25 24 28 28 C 1.33390 * 122.53930 * 300.02258 * 24 2 1 29 29 H 1.09005 * 109.46716 * 300.00008 * 1 2 3 30 30 H 1.08998 * 109.47266 * 59.99628 * 1 2 3 31 31 H 1.08995 * 109.47201 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.16464 * 342.02719 * 7 6 4 33 33 H 1.09004 * 109.16937 * 101.23116 * 7 6 4 34 34 H 1.09004 * 109.60770 * 280.22632 * 8 7 6 35 35 H 1.08996 * 109.43192 * 160.18752 * 8 7 6 36 36 H 1.09002 * 109.59121 * 148.72445 * 9 8 7 37 37 H 1.09001 * 109.70636 * 28.36023 * 9 8 7 38 38 H 1.08997 * 109.47495 * 60.00180 * 13 11 10 39 39 H 1.08998 * 109.47277 * 180.02562 * 13 11 10 40 40 H 0.97000 * 119.99915 * 359.97438 * 14 13 11 41 41 H 0.96994 * 119.99845 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.46310 * 210.72764 * 23 6 4 43 43 H 1.08999 * 109.46360 * 330.70528 * 23 6 4 44 44 H 1.07995 * 122.53847 * 0.03621 * 25 24 2 45 45 H 1.08002 * 125.19887 * 179.97438 * 26 25 24 46 46 H 1.07998 * 125.20164 * 0.02562 * 28 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7297 -1.6966 1.1191 6 7 1.7069 -0.2501 2.4545 7 6 0.8623 0.9548 2.5581 8 6 1.3609 1.8886 3.6655 9 6 2.8755 1.9313 3.6449 10 8 3.3733 0.9293 4.5219 11 6 3.5660 -0.3524 4.0476 12 1 4.2365 -0.3250 3.1886 13 6 4.1833 -1.2163 5.1491 14 7 5.4710 -0.6460 5.5530 15 6 6.2121 -1.2532 6.5314 16 1 5.8472 -2.1523 7.0056 17 6 7.4324 -0.7131 6.9136 18 7 7.8768 0.3830 6.3360 19 14 8.4430 -1.5410 8.2488 20 1 8.7793 -2.9250 7.8285 21 1 9.6944 -0.7727 8.4705 22 1 7.6587 -1.5831 9.5090 23 6 2.2049 -0.9554 3.6209 24 6 2.0323 -0.7104 -1.2305 25 6 2.8306 -0.0889 -2.1753 26 6 3.1874 -0.8594 -3.2041 27 16 2.4918 -2.4630 -3.0092 28 6 1.7410 -1.9855 -1.4920 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 0.8797 1.4868 1.6069 33 1 -0.1619 0.6559 2.7813 34 1 1.0212 1.5215 4.6340 35 1 0.9673 2.8913 3.4990 36 1 3.2181 2.9111 3.9777 37 1 3.2348 1.7427 2.6333 38 1 3.5129 -1.2439 6.0080 39 1 4.3360 -2.2285 4.7744 40 1 5.7989 0.1613 5.1268 41 1 8.7293 0.7606 6.6034 42 1 1.4909 -0.8550 4.4384 43 1 2.3346 -2.0104 3.3795 44 1 3.1411 0.9416 -2.0861 45 1 3.8052 -0.5451 -4.0324 46 1 1.1328 -2.6254 -0.8699 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201396349.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:22 Heat of formation + Delta-G solvation = -39.521374 kcal Electronic energy + Delta-G solvation = -27889.500979 eV Core-core repulsion = 24099.056200 eV Total energy + Delta-G solvation = -3790.444779 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.93608 -40.14514 -38.62036 -37.00095 -36.27884 -34.49122 -33.92888 -32.66516 -30.38587 -29.63572 -27.73083 -27.00435 -26.07818 -24.85545 -23.55875 -22.50597 -22.26504 -20.53971 -19.40909 -19.26446 -18.78695 -18.14106 -17.66317 -17.53388 -16.92669 -16.60612 -16.12255 -15.95304 -15.39516 -15.20465 -15.10520 -14.77119 -14.67120 -14.46800 -14.03744 -13.89453 -13.76387 -13.53570 -13.35499 -13.20645 -13.12164 -13.09313 -12.73977 -12.63617 -12.45091 -12.37774 -12.27679 -12.14666 -11.92949 -11.79990 -11.60940 -11.43111 -10.97691 -10.72430 -10.53366 -9.67395 -9.63279 -9.31483 -9.02450 -7.94777 -5.24855 0.12228 0.76868 1.08505 1.45493 1.50451 1.55508 1.56736 1.66682 2.07268 2.55765 2.72943 3.38164 3.47297 3.63737 3.72015 3.87379 3.97634 4.02488 4.07990 4.13643 4.23035 4.26979 4.32069 4.40092 4.44733 4.50174 4.54019 4.68662 4.70916 4.73474 4.83092 4.86517 4.87362 4.92095 5.08655 5.12820 5.14644 5.22397 5.26657 5.45541 5.45882 5.54018 5.55762 6.25449 6.29887 6.76073 7.14320 7.31758 8.05971 8.31668 9.28947 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013527 B = 0.002839 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.473658 B = 9860.139670 C =11094.193300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.044 4.044 3 H 0.126 0.874 4 C 0.504 3.496 5 O -0.574 6.574 6 N -0.605 5.605 7 C 0.095 3.905 8 C -0.158 4.158 9 C 0.063 3.937 10 O -0.397 6.397 11 C 0.107 3.893 12 H 0.016 0.984 13 C 0.162 3.838 14 N -0.740 5.740 15 C -0.251 4.251 16 H 0.077 0.923 17 C -0.077 4.077 18 N -0.970 5.970 19 Si 0.980 3.020 20 H -0.277 1.277 21 H -0.293 1.293 22 H -0.275 1.275 23 C 0.096 3.904 24 C -0.101 4.101 25 C -0.139 4.139 26 C -0.216 4.216 27 S 0.084 5.916 28 C -0.193 4.193 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.115 0.885 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.123 0.877 36 H 0.093 0.907 37 H 0.042 0.958 38 H 0.033 0.967 39 H 0.031 0.969 40 H 0.374 0.626 41 H 0.252 0.748 42 H 0.102 0.898 43 H 0.077 0.923 44 H 0.159 0.841 45 H 0.186 0.814 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.633 4.263 -19.137 29.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.067 4.067 3 H 0.143 0.857 4 C 0.293 3.707 5 O -0.452 6.452 6 N -0.337 5.337 7 C -0.025 4.025 8 C -0.196 4.196 9 C -0.013 4.013 10 O -0.316 6.316 11 C 0.046 3.954 12 H 0.034 0.966 13 C 0.035 3.965 14 N -0.382 5.382 15 C -0.382 4.382 16 H 0.095 0.905 17 C -0.269 4.269 18 N -0.621 5.621 19 Si 0.808 3.192 20 H -0.204 1.204 21 H -0.219 1.219 22 H -0.201 1.201 23 C -0.029 4.029 24 C -0.114 4.114 25 C -0.169 4.169 26 C -0.351 4.351 27 S 0.348 5.652 28 C -0.329 4.329 29 H 0.114 0.886 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.133 0.867 33 H 0.117 0.883 34 H 0.093 0.907 35 H 0.141 0.859 36 H 0.111 0.889 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.049 0.951 40 H 0.205 0.795 41 H 0.060 0.940 42 H 0.121 0.879 43 H 0.095 0.905 44 H 0.176 0.824 45 H 0.203 0.797 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -22.198 2.308 -19.754 29.804 hybrid contribution 1.258 0.830 1.211 1.933 sum -20.940 3.137 -18.543 28.145 Atomic orbital electron populations 1.22114 0.89618 1.03331 1.05297 1.20050 0.99345 0.99950 0.87377 0.85661 1.21327 0.79373 0.84366 0.85614 1.90727 1.39062 1.28531 1.86917 1.47987 1.51460 1.29470 1.04829 1.22548 0.94280 0.84216 1.01494 1.22412 0.94915 1.02308 0.99966 1.22426 0.94750 0.90894 0.93236 1.86361 1.85409 1.18360 1.41474 1.21858 0.94984 0.83647 0.94871 0.96589 1.20755 0.86871 0.94178 0.94667 1.42402 1.19566 1.31213 1.45039 1.19655 0.99900 1.06661 1.12025 0.90497 1.25659 0.99454 0.98776 1.03049 1.69849 1.21657 1.23723 1.46865 0.85123 0.77606 0.77500 0.78976 1.20355 1.21893 1.20067 1.22077 0.95094 0.97060 0.88668 1.18608 1.01193 0.94219 0.97370 1.20306 0.99946 1.02468 0.94147 1.25853 1.08035 0.96102 1.05126 1.84198 1.47889 1.14387 1.18731 1.25412 1.07400 0.99390 1.00702 0.88577 0.89436 0.92956 0.86669 0.88345 0.90738 0.85879 0.88867 0.93970 0.94907 0.95123 0.79462 0.93967 0.87949 0.90467 0.82388 0.79705 0.82830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.54 71.98 0.61 -0.88 16 2 C -0.04 -0.74 2.15 -12.29 -0.03 -0.76 16 3 H 0.13 1.55 7.29 -2.39 -0.02 1.53 16 4 C 0.50 12.85 6.94 87.66 0.61 13.46 16 5 O -0.57 -20.59 14.66 -3.04 -0.04 -20.64 16 6 N -0.61 -13.46 2.20 -818.58 -1.80 -15.26 16 7 C 0.09 1.17 4.43 86.26 0.38 1.56 16 8 C -0.16 -2.36 5.78 30.18 0.17 -2.18 16 9 C 0.06 1.57 6.37 71.50 0.46 2.02 16 10 O -0.40 -14.45 9.18 -117.87 -1.08 -15.53 16 11 C 0.11 4.01 2.74 31.23 0.09 4.09 16 12 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 13 C 0.16 7.32 5.95 86.38 0.51 7.83 16 14 N -0.74 -41.75 5.49 -343.44 -1.88 -43.63 16 15 C -0.25 -15.05 9.99 84.03 0.84 -14.21 16 16 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 17 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 18 N -0.97 -62.65 13.06 21.65 0.28 -62.37 16 19 Si 0.98 48.19 29.55 68.60 2.03 50.22 16 20 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 21 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 22 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 23 C 0.10 2.73 4.87 87.27 0.43 3.16 16 24 C -0.10 -2.11 4.28 -20.92 -0.09 -2.20 16 25 C -0.14 -2.59 9.92 21.22 0.21 -2.38 16 26 C -0.22 -3.87 11.23 66.72 0.75 -3.12 16 27 S 0.08 1.69 23.34 -56.49 -1.32 0.37 16 28 C -0.19 -4.35 9.26 66.72 0.62 -3.73 16 29 H 0.10 0.57 4.62 -2.38 -0.01 0.55 16 30 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.66 7.74 -2.39 -0.02 0.65 16 32 H 0.12 0.82 4.97 -2.39 -0.01 0.81 16 33 H 0.10 0.76 7.54 -2.38 -0.02 0.74 16 34 H 0.07 1.31 8.01 -2.38 -0.02 1.29 16 35 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.04 1.07 7.41 -2.39 -0.02 1.05 16 38 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.37 22.69 7.53 -92.71 -0.70 21.99 16 41 H 0.25 15.62 8.31 -92.71 -0.77 14.85 16 42 H 0.10 2.51 8.12 -2.39 -0.02 2.49 16 43 H 0.08 2.45 7.27 -2.39 -0.02 2.44 16 44 H 0.16 2.22 8.06 -2.91 -0.02 2.19 16 45 H 0.19 2.32 8.06 -2.91 -0.02 2.30 16 46 H 0.15 3.49 7.94 -2.91 -0.02 3.47 16 Total: -1.00 -81.22 376.30 2.50 -78.72 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: 0.29 Total: 29.69 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 6.03 Total: -1.57 kcal Atomic # 7 Polarization: -117.86 SS G_CDS: -3.40 Total: -121.26 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -1.13 Total: -36.16 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 2.03 Total: 50.22 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -1.32 Total: 0.37 kcal Total: -81.22 2.50 -78.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201396349.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.198 kcal (2) G-P(sol) polarization free energy of solvation -81.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds