Wall clock time and date at job start Tue Mar 31 2020 20:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 114.00126 * 2 1 4 4 H 1.08996 * 110.64393 * 26.85406 * 3 2 1 5 5 C 1.54328 * 110.71918 * 263.51970 * 3 2 1 6 6 N 1.47019 * 107.26954 * 219.44588 * 5 3 2 7 7 C 1.36946 * 125.64345 * 178.98939 * 6 5 3 8 8 H 1.07999 * 119.99557 * 174.78250 * 7 6 5 9 9 C 1.38806 * 120.00004 * 354.77740 * 7 6 5 10 10 N 1.31612 * 120.00403 * 7.05747 * 9 7 6 11 11 Si 1.86799 * 119.99652 * 187.05539 * 9 7 6 12 12 H 1.48502 * 109.47251 * 94.99360 * 11 9 7 13 13 H 1.48510 * 109.47237 * 214.98587 * 11 9 7 14 14 H 1.48493 * 109.47749 * 334.98967 * 11 9 7 15 15 C 1.47425 * 108.70628 * 358.93417 * 6 5 3 16 16 C 1.54912 * 104.82973 * 24.13606 * 15 6 5 17 17 H 1.08993 * 111.00587 * 81.05931 * 16 15 6 18 18 N 1.46497 * 111.03556 * 204.90407 * 16 15 6 19 19 C 1.34784 * 119.99370 * 270.39321 * 18 16 15 20 20 O 1.21277 * 119.99873 * 359.97438 * 19 18 16 21 21 C 1.50703 * 119.99481 * 180.02562 * 19 18 16 22 22 H 1.08992 * 109.47246 * 59.99688 * 21 19 18 23 23 C 1.52999 * 109.46970 * 299.99468 * 21 19 18 24 24 C 1.53003 * 109.46579 * 179.97438 * 21 19 18 25 25 C 1.50697 * 109.46714 * 184.99829 * 24 21 19 26 26 C 1.33389 * 125.20620 * 90.00319 * 25 24 21 27 27 C 1.38421 * 114.92538 * 179.97438 * 26 25 24 28 28 C 1.33394 * 114.91975 * 359.97438 * 27 26 25 29 29 S 1.75879 * 109.59000 * 359.76378 * 28 27 26 30 30 H 1.08996 * 109.47394 * 300.00430 * 1 2 3 31 31 H 1.08996 * 109.46936 * 60.00415 * 1 2 3 32 32 H 1.08998 * 109.47154 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.87938 * 338.86357 * 5 3 2 34 34 H 1.08994 * 109.88316 * 99.86782 * 5 3 2 35 35 H 0.97000 * 120.00448 * 180.02562 * 10 9 7 36 36 H 1.08993 * 110.37045 * 265.29353 * 15 6 5 37 37 H 1.09002 * 110.36114 * 142.96925 * 15 6 5 38 38 H 0.96993 * 120.00479 * 90.39028 * 18 16 15 39 39 H 1.09002 * 109.47000 * 180.02562 * 23 21 19 40 40 H 1.09006 * 109.47359 * 300.00055 * 23 21 19 41 41 H 1.08991 * 109.47267 * 60.00228 * 23 21 19 42 42 H 1.09003 * 109.47063 * 304.99376 * 24 21 19 43 43 H 1.09002 * 109.47572 * 64.99716 * 24 21 19 44 44 H 1.08000 * 122.53597 * 359.94834 * 26 25 24 45 45 H 1.07997 * 122.54140 * 180.02562 * 27 26 25 46 46 H 1.08003 * 125.19866 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3353 2.0266 0.4607 5 6 2.3812 1.7379 -1.4343 6 7 3.6686 2.4437 -1.3581 7 6 4.3541 2.9703 -2.4203 8 1 5.2527 3.5451 -2.2515 9 6 3.8939 2.7652 -3.7137 10 7 2.7291 2.1862 -3.9138 11 14 4.9281 3.3111 -5.1704 12 1 5.7407 2.1673 -5.6570 13 1 4.0372 3.7844 -6.2603 14 1 5.8284 4.4155 -4.7523 15 6 4.0988 2.4918 0.0512 16 6 3.3817 1.2957 0.7257 17 1 3.9158 0.3642 0.5391 18 7 3.2166 1.5244 2.1632 19 6 4.1768 1.1298 3.0229 20 8 5.1771 0.5852 2.6063 21 6 4.0067 1.3645 4.5018 22 1 3.1124 0.8486 4.8510 23 6 3.8666 2.8647 4.7673 24 6 5.2295 0.8261 5.2474 25 6 5.0063 0.9489 6.7327 26 6 4.4457 0.0177 7.5057 27 6 4.3458 0.3538 8.8448 28 6 4.8258 1.5579 9.1593 29 16 5.4531 2.3388 7.7136 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 2.4769 0.8599 -2.0731 34 1 1.6141 2.4029 -1.8310 35 1 2.4077 2.0425 -4.8177 36 1 3.7872 3.4294 0.5112 37 1 5.1802 2.3745 0.1218 38 1 2.4164 1.9596 2.4964 39 1 3.7441 3.0345 5.8370 40 1 4.7611 3.3807 4.4180 41 1 2.9955 3.2479 4.2361 42 1 5.3808 -0.2218 4.9882 43 1 6.1107 1.4015 4.9635 44 1 4.0957 -0.9269 7.1163 45 1 3.9127 -0.3090 9.5794 46 1 4.8324 1.9859 10.1509 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213504174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:53 Heat of formation + Delta-G solvation = -45.959121 kcal Electronic energy + Delta-G solvation = -27080.980949 eV Core-core repulsion = 23290.257009 eV Total energy + Delta-G solvation = -3790.723941 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.27973 -39.82466 -38.76503 -37.51736 -35.77986 -35.62756 -33.66494 -31.16208 -30.36994 -28.83194 -27.52135 -27.39244 -26.25385 -25.06018 -23.45847 -22.26125 -21.96299 -20.99475 -19.90356 -19.12229 -18.53743 -17.85749 -17.61445 -17.17609 -16.58164 -16.33257 -16.24610 -15.87292 -15.82106 -15.34116 -15.08640 -14.96992 -14.50233 -14.28052 -14.07415 -13.70887 -13.64604 -13.52609 -13.33062 -13.15713 -13.02174 -12.92125 -12.78868 -12.73938 -12.59186 -12.30837 -12.18564 -12.06853 -11.94332 -11.88803 -11.63061 -11.56319 -10.90393 -10.76833 -10.55129 -10.09032 -9.51816 -9.30951 -8.97519 -7.90206 -5.26784 0.11698 0.76144 1.16236 1.44271 1.47552 1.55700 1.62964 1.86878 2.08548 2.45550 2.77298 3.29411 3.51186 3.53851 3.81716 3.85830 3.91595 3.95596 4.06386 4.17183 4.30680 4.34069 4.41248 4.46065 4.55473 4.60032 4.65382 4.74332 4.82409 4.83193 4.84933 4.88098 4.92240 5.00869 5.09913 5.25903 5.30964 5.31838 5.37915 5.45249 5.48164 5.64784 5.65017 6.12494 6.31632 6.54672 7.03365 7.25889 7.68602 8.31456 9.19898 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018913 B = 0.002392 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.077311 B =11702.809952 C =12702.436833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.077 3.923 4 H 0.098 0.902 5 C 0.174 3.826 6 N -0.622 5.622 7 C -0.247 4.247 8 H 0.083 0.917 9 C -0.061 4.061 10 N -0.947 5.947 11 Si 0.979 3.021 12 H -0.289 1.289 13 H -0.290 1.290 14 H -0.266 1.266 15 C 0.132 3.868 16 C 0.150 3.850 17 H 0.072 0.928 18 N -0.700 5.700 19 C 0.517 3.483 20 O -0.583 6.583 21 C -0.090 4.090 22 H 0.124 0.876 23 C -0.148 4.148 24 C -0.028 4.028 25 C -0.179 4.179 26 C -0.143 4.143 27 C -0.140 4.140 28 C -0.218 4.218 29 S 0.087 5.913 30 H 0.066 0.934 31 H 0.034 0.966 32 H 0.100 0.900 33 H 0.018 0.982 34 H 0.021 0.979 35 H 0.249 0.751 36 H 0.043 0.957 37 H 0.033 0.967 38 H 0.416 0.584 39 H 0.082 0.918 40 H 0.052 0.948 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.148 0.852 45 H 0.159 0.841 46 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.870 -0.896 27.746 28.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C 0.018 3.982 4 H 0.116 0.884 5 C 0.048 3.952 6 N -0.350 5.350 7 C -0.376 4.376 8 H 0.100 0.900 9 C -0.255 4.255 10 N -0.595 5.595 11 Si 0.807 3.193 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.191 1.191 15 C 0.005 3.995 16 C 0.043 3.957 17 H 0.090 0.910 18 N -0.352 5.352 19 C 0.305 3.695 20 O -0.462 6.462 21 C -0.112 4.112 22 H 0.141 0.859 23 C -0.206 4.206 24 C -0.068 4.068 25 C -0.296 4.296 26 C -0.174 4.174 27 C -0.170 4.170 28 C -0.353 4.353 29 S 0.350 5.650 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.118 0.882 33 H 0.036 0.964 34 H 0.039 0.961 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.253 0.747 39 H 0.100 0.900 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.166 0.834 45 H 0.176 0.824 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -2.395 -0.038 26.980 27.086 hybrid contribution -0.598 -0.871 -1.033 1.478 sum -2.992 -0.910 25.947 26.135 Atomic orbital electron populations 1.22996 0.79285 1.03904 1.00808 1.87897 1.21801 1.27018 1.94922 1.23491 0.93648 0.85288 0.95786 0.88394 1.21294 0.87063 0.94770 0.92099 1.44525 1.21848 1.66460 1.02159 1.19432 1.06013 1.26939 0.85205 0.89952 1.25684 0.98470 1.01344 0.99960 1.70158 1.19735 1.49452 1.20157 0.85058 0.77755 0.77751 0.78760 1.21657 1.21664 1.19090 1.21923 0.97189 0.95792 0.84554 1.21806 0.95539 0.98203 0.80108 0.90953 1.45706 1.22963 1.61401 1.05088 1.21250 0.82024 0.76616 0.89649 1.90711 1.30802 1.44279 1.80411 1.21260 1.01266 1.00279 0.88357 0.85852 1.21929 1.03111 0.91687 1.03837 1.19844 0.97117 1.02684 0.87131 1.24388 1.07584 0.98555 0.99090 1.20413 1.02352 1.00974 0.93612 1.20415 1.02872 0.97214 0.96541 1.25959 1.07162 0.99592 1.02563 1.84434 1.61052 1.19875 0.99644 0.91544 0.94675 0.88178 0.96394 0.96121 0.94157 0.93943 0.94829 0.74677 0.89952 0.92864 0.90155 0.90083 0.91373 0.83401 0.82387 0.79968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 10.85 113.37 1.23 1.89 16 2 O -0.40 -14.21 10.43 -148.98 -1.55 -15.77 16 3 C 0.08 2.84 3.08 31.79 0.10 2.94 16 4 H 0.10 2.92 7.67 -2.39 -0.02 2.91 16 5 C 0.17 8.70 5.16 86.73 0.45 9.15 16 6 N -0.62 -32.98 3.39 -691.99 -2.35 -35.33 16 7 C -0.25 -14.25 10.27 84.03 0.86 -13.39 16 8 H 0.08 4.57 7.84 -2.91 -0.02 4.55 16 9 C -0.06 -3.54 5.48 84.86 0.46 -3.08 16 10 N -0.95 -57.47 10.36 21.65 0.22 -57.24 16 11 Si 0.98 46.58 29.56 68.60 2.03 48.60 16 12 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 13 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 14 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 15 C 0.13 5.69 6.93 86.86 0.60 6.30 16 16 C 0.15 5.60 3.09 46.39 0.14 5.74 16 17 H 0.07 3.22 7.63 -2.39 -0.02 3.20 16 18 N -0.70 -18.76 5.11 -435.96 -2.23 -20.99 16 19 C 0.52 14.43 7.15 87.66 0.63 15.06 16 20 O -0.58 -22.10 15.61 -3.02 -0.05 -22.15 16 21 C -0.09 -1.68 2.71 -11.54 -0.03 -1.71 16 22 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 23 C -0.15 -2.28 8.83 71.98 0.64 -1.65 16 24 C -0.03 -0.57 4.53 29.85 0.14 -0.43 16 25 C -0.18 -3.07 5.07 24.59 0.12 -2.95 16 26 C -0.14 -2.16 10.05 21.22 0.21 -1.95 16 27 C -0.14 -1.77 10.18 21.22 0.22 -1.56 16 28 C -0.22 -2.70 11.23 66.72 0.75 -1.95 16 29 S 0.09 1.33 21.92 -56.49 -1.24 0.09 16 30 H 0.07 1.28 8.11 -2.39 -0.02 1.26 16 31 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.02 1.04 7.21 -2.39 -0.02 1.03 16 34 H 0.02 1.12 7.61 -2.39 -0.02 1.10 16 35 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 36 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.42 7.90 7.95 -92.71 -0.74 7.16 16 39 H 0.08 1.11 6.19 -2.39 -0.01 1.10 16 40 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.08 0.99 7.56 -2.39 -0.02 0.97 16 42 H 0.08 1.81 7.95 -2.39 -0.02 1.80 16 43 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 45 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 46 H 0.18 1.38 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -75.30 387.53 1.59 -73.70 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.24 Total: 16.67 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 6.52 Total: 12.41 kcal Atomic # 7 Polarization: -109.21 SS G_CDS: -4.35 Total: -113.56 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -1.60 Total: -37.91 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -1.24 Total: 0.09 kcal Total: -75.30 1.59 -73.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213504174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.744 kcal (2) G-P(sol) polarization free energy of solvation -75.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds