Wall clock time and date at job start Tue Mar 31 2020 21:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46912 * 2 1 4 4 C 1.52993 * 109.47268 * 240.00017 * 2 1 3 5 5 N 1.46500 * 109.46992 * 185.00328 * 4 2 1 6 6 C 1.34785 * 120.00194 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99207 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00157 * 179.97438 * 6 5 4 9 9 S 1.80992 * 109.47035 * 180.02562 * 8 6 5 10 10 C 1.76204 * 100.00189 * 180.02562 * 9 8 6 11 11 H 1.08002 * 119.99520 * 359.97438 * 10 9 8 12 12 C 1.38796 * 120.00006 * 179.97438 * 10 9 8 13 13 N 1.31628 * 120.00374 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99655 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47256 * 60.00050 * 14 12 10 16 16 H 1.48497 * 109.46882 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46943 * 299.99769 * 14 12 10 18 18 N 1.46900 * 109.46977 * 119.99431 * 2 1 3 19 19 C 1.46895 * 111.00327 * 275.00403 * 18 2 1 20 20 C 1.53001 * 109.47245 * 180.02562 * 19 18 2 21 21 H 1.09000 * 109.47117 * 304.99604 * 20 19 18 22 22 O 1.42893 * 109.47217 * 64.99835 * 20 19 18 23 23 C 1.50703 * 109.46987 * 185.00250 * 20 19 18 24 24 C 1.38235 * 120.00292 * 99.99885 * 23 20 19 25 25 C 1.38230 * 119.99899 * 179.97438 * 24 23 20 26 26 C 1.38235 * 120.00326 * 359.95697 * 25 24 23 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99503 * 279.97178 * 23 20 19 29 29 H 1.09002 * 109.46912 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47515 * 300.00185 * 1 2 3 31 31 H 1.09003 * 109.46948 * 60.00515 * 1 2 3 32 32 H 1.09001 * 109.46898 * 304.99628 * 4 2 1 33 33 H 1.09000 * 109.47544 * 64.99789 * 4 2 1 34 34 H 0.97003 * 119.99980 * 359.97438 * 5 4 2 35 35 H 1.09001 * 109.46975 * 299.99723 * 8 6 5 36 36 H 1.09000 * 109.47204 * 59.99724 * 8 6 5 37 37 H 0.97003 * 120.00349 * 180.02562 * 13 12 10 38 38 H 1.00902 * 111.00104 * 38.95592 * 18 2 1 39 39 H 1.09007 * 109.47218 * 59.99812 * 19 18 2 40 40 H 1.08998 * 109.47287 * 300.00232 * 19 18 2 41 41 H 0.96700 * 114.00002 * 59.99890 * 22 20 19 42 42 H 1.08001 * 119.99730 * 359.97438 * 24 23 20 43 43 H 1.08000 * 120.00376 * 179.97438 * 25 24 23 44 44 H 1.08000 * 120.00616 * 179.72578 * 26 25 24 45 45 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 46 46 H 1.07997 * 120.00455 * 0.02562 * 28 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8264 -1.1904 6 6 4.1732 -1.4292 -2.1905 7 8 3.5699 -1.8850 -3.1389 8 6 5.6751 -1.5369 -2.1303 9 16 6.2784 -2.3902 -3.6080 10 6 8.0102 -2.3774 -3.2832 11 1 8.3864 -1.9241 -2.3779 12 6 8.8908 -2.9498 -4.1905 13 7 8.4322 -3.5027 -5.2936 14 14 10.7268 -2.9356 -3.8464 15 1 10.9983 -3.6586 -2.5780 16 1 11.4445 -3.6053 -4.9607 17 1 11.1971 -1.5321 -3.7266 18 7 2.0196 -0.6924 1.1995 19 6 2.0824 0.2227 2.3469 20 6 2.5961 -0.5327 3.5742 21 1 1.9708 -1.4080 3.7502 22 8 3.9444 -0.9482 3.3479 23 6 2.5445 0.3717 4.7786 24 6 1.5020 0.2636 5.6800 25 6 1.4550 1.0928 6.7850 26 6 2.4509 2.0295 6.9892 27 6 3.4941 2.1366 6.0886 28 6 3.5400 1.3089 4.9823 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6054 -1.7198 -1.2950 33 1 1.7517 -0.1583 -2.1369 34 1 3.9824 -0.4621 -0.4317 35 1 6.1094 -0.5381 -2.0852 36 1 5.9638 -2.0991 -1.2423 37 1 9.0476 -3.9031 -5.9276 38 1 1.4495 -1.4978 1.4102 39 1 1.0869 0.6164 2.5525 40 1 2.7587 1.0463 2.1183 41 1 4.5583 -0.2193 3.1839 42 1 0.7243 -0.4687 5.5209 43 1 0.6404 1.0087 7.4890 44 1 2.4119 2.6804 7.8501 45 1 4.2720 2.8687 6.2478 46 1 4.3544 1.3934 4.2781 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265754320.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:25 Heat of formation + Delta-G solvation = -67.679200 kcal Electronic energy + Delta-G solvation = -25771.178221 eV Core-core repulsion = 21979.512427 eV Total energy + Delta-G solvation = -3791.665794 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.15301 -39.14855 -37.94828 -36.66863 -33.81077 -32.36352 -32.30445 -31.32150 -30.99712 -29.22256 -27.26562 -25.85248 -25.27853 -23.56735 -22.98125 -21.60706 -21.04268 -20.07113 -18.06789 -17.75251 -16.79501 -16.29104 -16.18251 -16.04175 -15.81245 -15.38576 -15.07351 -14.74372 -14.66416 -14.48936 -14.00015 -13.87264 -13.78217 -13.52760 -13.33927 -12.96014 -12.83203 -12.77549 -12.48474 -12.35873 -12.10389 -11.98211 -11.64351 -11.58910 -11.38521 -11.21469 -10.98504 -10.97396 -10.70864 -10.36084 -9.74966 -9.38657 -9.25649 -9.20634 -8.99595 -8.76679 -8.63756 -8.14618 -6.41381 -6.14761 -3.84360 0.84632 0.93554 3.15392 3.25417 3.27583 3.28839 3.32366 3.38750 3.61744 3.89370 4.13790 4.27487 4.33617 4.39217 4.49964 4.54998 4.60927 4.66943 4.74321 4.80961 4.94949 5.02024 5.04955 5.18219 5.20010 5.28997 5.34427 5.39970 5.46739 5.48862 5.58265 5.67631 5.71229 5.77602 5.96388 5.98644 6.03305 6.05688 6.10912 6.27381 6.51526 6.58751 6.81807 7.01768 7.35349 7.66072 7.97222 8.42037 8.81094 9.30311 10.92601 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012699 B = 0.002129 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.390500 B =13151.097394 C =15028.572158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.072 3.928 3 H 0.083 0.917 4 C 0.135 3.865 5 N -0.723 5.723 6 C 0.530 3.470 7 O -0.526 6.526 8 C -0.151 4.151 9 S -0.062 6.062 10 C -0.534 4.534 11 H 0.072 0.928 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 N -0.673 5.673 19 C 0.033 3.967 20 C 0.152 3.848 21 H 0.104 0.896 22 O -0.538 6.538 23 C -0.116 4.116 24 C -0.110 4.110 25 C -0.119 4.119 26 C -0.121 4.121 27 C -0.117 4.117 28 C -0.110 4.110 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.403 0.597 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.268 0.732 38 H 0.346 0.654 39 H 0.040 0.960 40 H 0.077 0.923 41 H 0.373 0.627 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.205 13.148 24.967 33.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.038 4.038 3 H 0.101 0.899 4 C 0.009 3.991 5 N -0.377 5.377 6 C 0.316 3.684 7 O -0.402 6.402 8 C -0.301 4.301 9 S 0.164 5.836 10 C -0.682 4.682 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.504 5.504 14 Si 0.744 3.256 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.200 1.200 18 N -0.304 5.304 19 C -0.097 4.097 20 C 0.092 3.908 21 H 0.122 0.878 22 O -0.343 6.343 23 C -0.117 4.117 24 C -0.129 4.129 25 C -0.137 4.137 26 C -0.139 4.139 27 C -0.135 4.135 28 C -0.128 4.128 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.238 0.762 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.165 0.835 39 H 0.058 0.942 40 H 0.096 0.904 41 H 0.221 0.779 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.142 0.858 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -17.769 11.778 23.124 31.451 hybrid contribution 1.259 1.450 1.957 2.742 sum -16.511 13.229 25.080 32.812 Atomic orbital electron populations 1.22420 0.96210 1.02751 1.02590 1.21843 0.93262 0.98289 0.90447 0.89879 1.21209 0.81522 1.00510 0.95820 1.45757 1.06619 1.61312 1.24054 1.20276 0.89443 0.76904 0.81780 1.90687 1.69937 1.46504 1.33039 1.23500 0.93838 1.05399 1.07407 1.85362 1.04417 1.73331 1.20466 1.22838 0.91646 1.44118 1.09597 0.91014 1.24988 0.99514 0.94635 0.94504 1.70013 1.35418 1.35522 1.09437 0.86236 0.82909 0.78413 0.78003 1.19945 1.20878 1.19987 1.60430 1.57873 1.09196 1.02932 1.22697 1.00356 0.95811 0.90811 1.20759 0.85245 0.95636 0.89205 0.87775 1.86699 1.17258 1.36890 1.93492 1.20585 0.95816 0.97663 0.97587 1.21010 0.97988 0.99452 0.94406 1.21165 0.98932 0.95956 0.97647 1.21208 0.94661 0.98613 0.99412 1.21168 0.98476 0.99252 0.94563 1.20933 0.98408 0.95382 0.98090 0.91867 0.92488 0.91403 0.91848 0.91543 0.76238 0.89507 0.89198 0.92214 0.83531 0.94196 0.90423 0.77916 0.85985 0.85958 0.86032 0.85842 0.85972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.15 9.16 37.16 0.34 -0.81 16 2 C 0.07 0.56 2.75 -67.72 -0.19 0.38 16 3 H 0.08 0.63 7.80 -51.93 -0.40 0.23 16 4 C 0.13 1.58 5.37 -4.05 -0.02 1.56 16 5 N -0.72 -10.20 5.39 -60.30 -0.32 -10.52 16 6 C 0.53 10.37 7.85 -10.98 -0.09 10.28 16 7 O -0.53 -12.44 15.86 5.55 0.09 -12.35 16 8 C -0.15 -3.18 6.16 36.00 0.22 -2.96 16 9 S -0.06 -1.74 20.57 -107.50 -2.21 -3.95 16 10 C -0.53 -15.54 9.50 30.94 0.29 -15.24 16 11 H 0.07 1.97 7.80 -52.49 -0.41 1.57 16 12 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 13 N -0.87 -26.64 13.22 55.49 0.73 -25.90 16 14 Si 0.92 21.78 29.55 -169.99 -5.02 16.76 16 15 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 18 N -0.67 -5.11 5.64 -106.73 -0.60 -5.71 16 19 C 0.03 0.21 5.10 -3.83 -0.02 0.19 16 20 C 0.15 1.06 3.39 -27.88 -0.09 0.96 16 21 H 0.10 0.73 8.00 -51.93 -0.42 0.31 16 22 O -0.54 -4.87 13.14 -35.23 -0.46 -5.33 16 23 C -0.12 -0.80 4.97 -104.62 -0.52 -1.32 16 24 C -0.11 -0.72 9.67 -39.59 -0.38 -1.11 16 25 C -0.12 -0.73 10.05 -39.59 -0.40 -1.13 16 26 C -0.12 -0.74 10.05 -39.58 -0.40 -1.14 16 27 C -0.12 -0.74 10.05 -39.58 -0.40 -1.14 16 28 C -0.11 -0.73 9.32 -39.58 -0.37 -1.10 16 29 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 30 H 0.06 0.32 7.45 -51.93 -0.39 -0.07 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.40 4.85 8.14 -40.82 -0.33 4.52 16 35 H 0.09 1.69 8.14 -51.91 -0.42 1.26 16 36 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 37 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.35 2.57 8.47 -39.29 -0.33 2.23 16 39 H 0.04 0.23 7.44 -51.92 -0.39 -0.15 16 40 H 0.08 0.48 8.05 -51.93 -0.42 0.07 16 41 H 0.37 2.36 7.50 45.56 0.34 2.70 16 42 H 0.12 0.61 8.04 -52.49 -0.42 0.19 16 43 H 0.12 0.52 8.06 -52.49 -0.42 0.10 16 44 H 0.12 0.51 8.06 -52.49 -0.42 0.09 16 45 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 46 H 0.12 0.62 6.79 -52.49 -0.36 0.26 16 LS Contribution 400.37 15.07 6.03 6.03 Total: -1.00 -36.37 400.37 -10.34 -46.71 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -6.46 Total: 4.84 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -2.11 Total: -10.56 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: -0.19 Total: -42.14 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.37 Total: -17.68 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.21 Total: -3.95 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.37 -10.34 -46.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265754320.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.967 kcal (2) G-P(sol) polarization free energy of solvation -36.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds