Wall clock time and date at job start Tue Mar 31 2020 21:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46912 * 2 1 4 4 C 1.52993 * 109.47268 * 240.00017 * 2 1 3 5 5 N 1.46500 * 109.46992 * 185.00328 * 4 2 1 6 6 C 1.34785 * 120.00194 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99207 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00157 * 179.97438 * 6 5 4 9 9 S 1.80992 * 109.47035 * 180.02562 * 8 6 5 10 10 C 1.76204 * 100.00189 * 180.02562 * 9 8 6 11 11 H 1.08002 * 119.99520 * 359.97438 * 10 9 8 12 12 C 1.38796 * 120.00006 * 179.97438 * 10 9 8 13 13 N 1.31628 * 120.00374 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99655 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47256 * 60.00050 * 14 12 10 16 16 H 1.48497 * 109.46882 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46943 * 299.99769 * 14 12 10 18 18 N 1.46900 * 109.46977 * 119.99431 * 2 1 3 19 19 C 1.46895 * 111.00327 * 275.00403 * 18 2 1 20 20 C 1.53001 * 109.47245 * 180.02562 * 19 18 2 21 21 H 1.09000 * 109.47117 * 304.99604 * 20 19 18 22 22 O 1.42893 * 109.47217 * 64.99835 * 20 19 18 23 23 C 1.50703 * 109.46987 * 185.00250 * 20 19 18 24 24 C 1.38235 * 120.00292 * 99.99885 * 23 20 19 25 25 C 1.38230 * 119.99899 * 179.97438 * 24 23 20 26 26 C 1.38235 * 120.00326 * 359.95697 * 25 24 23 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99503 * 279.97178 * 23 20 19 29 29 H 1.09002 * 109.46912 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47515 * 300.00185 * 1 2 3 31 31 H 1.09003 * 109.46948 * 60.00515 * 1 2 3 32 32 H 1.09001 * 109.46898 * 304.99628 * 4 2 1 33 33 H 1.09000 * 109.47544 * 64.99789 * 4 2 1 34 34 H 0.97003 * 119.99980 * 359.97438 * 5 4 2 35 35 H 1.09001 * 109.46975 * 299.99723 * 8 6 5 36 36 H 1.09000 * 109.47204 * 59.99724 * 8 6 5 37 37 H 0.97003 * 120.00349 * 180.02562 * 13 12 10 38 38 H 1.00902 * 111.00104 * 38.95592 * 18 2 1 39 39 H 1.09007 * 109.47218 * 59.99812 * 19 18 2 40 40 H 1.08998 * 109.47287 * 300.00232 * 19 18 2 41 41 H 0.96700 * 114.00002 * 59.99890 * 22 20 19 42 42 H 1.08001 * 119.99730 * 359.97438 * 24 23 20 43 43 H 1.08000 * 120.00376 * 179.97438 * 25 24 23 44 44 H 1.08000 * 120.00616 * 179.72578 * 26 25 24 45 45 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 46 46 H 1.07997 * 120.00455 * 0.02562 * 28 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8264 -1.1904 6 6 4.1732 -1.4292 -2.1905 7 8 3.5699 -1.8850 -3.1389 8 6 5.6751 -1.5369 -2.1303 9 16 6.2784 -2.3902 -3.6080 10 6 8.0102 -2.3774 -3.2832 11 1 8.3864 -1.9241 -2.3779 12 6 8.8908 -2.9498 -4.1905 13 7 8.4322 -3.5027 -5.2936 14 14 10.7268 -2.9356 -3.8464 15 1 10.9983 -3.6586 -2.5780 16 1 11.4445 -3.6053 -4.9607 17 1 11.1971 -1.5321 -3.7266 18 7 2.0196 -0.6924 1.1995 19 6 2.0824 0.2227 2.3469 20 6 2.5961 -0.5327 3.5742 21 1 1.9708 -1.4080 3.7502 22 8 3.9444 -0.9482 3.3479 23 6 2.5445 0.3717 4.7786 24 6 1.5020 0.2636 5.6800 25 6 1.4550 1.0928 6.7850 26 6 2.4509 2.0295 6.9892 27 6 3.4941 2.1366 6.0886 28 6 3.5400 1.3089 4.9823 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6054 -1.7198 -1.2950 33 1 1.7517 -0.1583 -2.1369 34 1 3.9824 -0.4621 -0.4317 35 1 6.1094 -0.5381 -2.0852 36 1 5.9638 -2.0991 -1.2423 37 1 9.0476 -3.9031 -5.9276 38 1 1.4495 -1.4978 1.4102 39 1 1.0869 0.6164 2.5525 40 1 2.7587 1.0463 2.1183 41 1 4.5583 -0.2193 3.1839 42 1 0.7243 -0.4687 5.5209 43 1 0.6404 1.0087 7.4890 44 1 2.4119 2.6804 7.8501 45 1 4.2720 2.8687 6.2478 46 1 4.3544 1.3934 4.2781 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265754320.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:24 Heat of formation + Delta-G solvation = -95.181480 kcal Electronic energy + Delta-G solvation = -25772.370810 eV Core-core repulsion = 21979.512427 eV Total energy + Delta-G solvation = -3792.858382 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.71320 -40.45779 -38.67606 -37.39008 -34.99300 -34.55824 -32.95552 -31.79820 -31.71009 -30.62383 -27.78988 -27.70343 -26.65564 -24.08085 -23.43031 -22.20590 -21.71346 -21.53850 -19.76912 -18.57673 -17.73317 -17.53481 -16.98085 -16.88793 -16.85522 -16.59822 -16.17101 -15.99267 -15.74423 -15.49513 -15.06939 -14.64940 -14.55335 -14.42896 -14.25808 -14.09223 -13.87678 -13.74679 -13.39417 -13.18969 -13.14288 -12.92104 -12.84422 -12.67367 -12.56494 -12.50203 -12.10435 -11.93197 -11.83290 -11.71412 -11.10771 -10.93831 -10.88595 -10.24940 -9.97081 -9.83284 -9.66736 -9.33965 -8.63762 -8.32046 -6.09963 0.39046 0.48921 1.29834 1.45510 1.49037 1.59691 1.70597 2.29444 2.41482 2.79304 3.01543 3.06055 3.36882 3.63391 3.82256 3.84672 3.94931 3.99877 4.09016 4.15175 4.21475 4.25398 4.29102 4.34578 4.36904 4.55606 4.57582 4.62627 4.65216 4.70779 4.82590 4.86745 4.97971 5.00229 5.06649 5.15476 5.24324 5.43731 5.55194 5.56417 5.62245 5.64749 6.01864 6.09258 6.22071 6.40379 6.66030 6.86729 7.08756 7.36396 8.76937 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012699 B = 0.002129 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.390500 B =13151.097394 C =15028.572158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.085 3.915 3 H 0.093 0.907 4 C 0.131 3.869 5 N -0.696 5.696 6 C 0.530 3.470 7 O -0.574 6.574 8 C -0.126 4.126 9 S -0.152 6.152 10 C -0.546 4.546 11 H 0.082 0.918 12 C 0.012 3.988 13 N -0.911 5.911 14 Si 0.999 3.001 15 H -0.263 1.263 16 H -0.279 1.279 17 H -0.261 1.261 18 N -0.683 5.683 19 C 0.042 3.958 20 C 0.156 3.844 21 H 0.101 0.899 22 O -0.561 6.561 23 C -0.125 4.125 24 C -0.123 4.123 25 C -0.129 4.129 26 C -0.130 4.130 27 C -0.129 4.129 28 C -0.122 4.122 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.417 0.583 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.271 0.729 38 H 0.347 0.653 39 H 0.049 0.951 40 H 0.081 0.919 41 H 0.382 0.618 42 H 0.133 0.867 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.916 14.686 27.364 35.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.025 4.025 3 H 0.111 0.889 4 C 0.006 3.994 5 N -0.349 5.349 6 C 0.315 3.685 7 O -0.454 6.454 8 C -0.278 4.278 9 S 0.075 5.925 10 C -0.694 4.694 11 H 0.100 0.900 12 C -0.193 4.193 13 N -0.548 5.548 14 Si 0.820 3.180 15 H -0.187 1.187 16 H -0.204 1.204 17 H -0.186 1.186 18 N -0.315 5.315 19 C -0.087 4.087 20 C 0.097 3.903 21 H 0.119 0.881 22 O -0.368 6.368 23 C -0.126 4.126 24 C -0.141 4.141 25 C -0.146 4.146 26 C -0.148 4.148 27 C -0.146 4.146 28 C -0.140 4.140 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.254 0.746 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.080 0.920 38 H 0.166 0.834 39 H 0.067 0.933 40 H 0.100 0.900 41 H 0.232 0.768 42 H 0.151 0.849 43 H 0.156 0.844 44 H 0.156 0.844 45 H 0.155 0.845 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.501 13.357 25.581 33.750 hybrid contribution 1.061 1.020 1.318 1.976 sum -16.440 14.377 26.899 34.648 Atomic orbital electron populations 1.22364 0.94744 1.02966 1.03332 1.21677 0.94191 0.97908 0.88707 0.88878 1.21420 0.79511 1.00427 0.97998 1.45540 1.07765 1.58914 1.22645 1.20052 0.88846 0.77245 0.82311 1.90674 1.70474 1.49024 1.35181 1.23336 0.95059 1.05507 1.03862 1.85541 1.05816 1.75285 1.25881 1.23173 0.91690 1.44381 1.10138 0.89986 1.26146 1.05281 0.93821 0.94029 1.70183 1.37447 1.36502 1.10656 0.84999 0.75652 0.79108 0.78193 1.18726 1.20370 1.18559 1.60380 1.58114 1.09648 1.03344 1.22617 1.00881 0.95350 0.89841 1.20728 0.84384 0.95628 0.89603 0.88104 1.86661 1.18369 1.38128 1.93639 1.20627 0.96259 0.97927 0.97763 1.21251 0.98336 0.99905 0.94566 1.21443 0.99503 0.95814 0.97880 1.21506 0.94543 0.98830 0.99932 1.21437 0.99031 0.99591 0.94585 1.21160 0.98767 0.95449 0.98601 0.91980 0.91066 0.91301 0.93036 0.92023 0.74621 0.87436 0.87695 0.92024 0.83387 0.93254 0.90041 0.76834 0.84882 0.84363 0.84435 0.84518 0.84857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 9.16 71.98 0.66 -1.18 16 2 C 0.09 1.16 2.75 44.91 0.12 1.28 16 3 H 0.09 1.14 7.80 -2.39 -0.02 1.12 16 4 C 0.13 2.93 5.37 86.38 0.46 3.39 16 5 N -0.70 -18.67 5.39 -463.06 -2.50 -21.16 16 6 C 0.53 20.58 7.85 87.65 0.69 21.27 16 7 O -0.57 -27.74 15.86 -3.04 -0.05 -27.79 16 8 C -0.13 -5.26 6.16 71.23 0.44 -4.82 16 9 S -0.15 -8.72 20.57 -56.49 -1.16 -9.88 16 10 C -0.55 -31.89 9.50 67.95 0.65 -31.25 16 11 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 12 C 0.01 0.69 5.49 84.86 0.47 1.15 16 13 N -0.91 -56.94 13.22 21.65 0.29 -56.65 16 14 Si 1.00 44.32 29.55 68.60 2.03 46.35 16 15 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 16 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 18 N -0.68 -8.97 5.64 -491.58 -2.77 -11.74 16 19 C 0.04 0.43 5.10 86.30 0.44 0.87 16 20 C 0.16 1.94 3.39 29.85 0.10 2.05 16 21 H 0.10 1.29 8.00 -2.39 -0.02 1.27 16 22 O -0.56 -9.40 13.14 -148.98 -1.96 -11.36 16 23 C -0.12 -1.56 4.97 -19.87 -0.10 -1.66 16 24 C -0.12 -1.44 9.67 22.27 0.22 -1.22 16 25 C -0.13 -1.38 10.05 22.27 0.22 -1.16 16 26 C -0.13 -1.39 10.05 22.27 0.22 -1.16 16 27 C -0.13 -1.44 10.05 22.27 0.22 -1.22 16 28 C -0.12 -1.45 9.32 22.27 0.21 -1.24 16 29 H 0.06 0.68 8.13 -2.39 -0.02 0.67 16 30 H 0.07 0.59 7.45 -2.39 -0.02 0.57 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.42 9.06 8.14 -92.71 -0.75 8.30 16 35 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 36 H 0.10 4.04 8.14 -2.39 -0.02 4.02 16 37 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 38 H 0.35 4.54 8.47 -89.69 -0.76 3.78 16 39 H 0.05 0.44 7.44 -2.38 -0.02 0.42 16 40 H 0.08 0.80 8.05 -2.39 -0.02 0.78 16 41 H 0.38 4.28 7.50 -74.06 -0.56 3.73 16 42 H 0.13 1.14 8.04 -2.91 -0.02 1.12 16 43 H 0.14 0.93 8.06 -2.91 -0.02 0.91 16 44 H 0.14 0.91 8.06 -2.91 -0.02 0.89 16 45 H 0.14 1.05 8.06 -2.91 -0.02 1.03 16 46 H 0.13 1.14 6.79 -2.91 -0.02 1.12 16 Total: -1.00 -80.34 400.37 -2.17 -82.51 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: -1.07 Total: 24.63 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: 5.02 Total: -14.90 kcal Atomic # 7 Polarization: -84.58 SS G_CDS: -4.98 Total: -89.56 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -2.01 Total: -39.15 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.88 kcal Total: -80.34 -2.17 -82.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265754320.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.672 kcal (2) G-P(sol) polarization free energy of solvation -80.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds