Wall clock time and date at job start Tue Mar 31 2020 20:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47251 * 2 1 4 4 C 1.52994 * 109.47363 * 120.00326 * 2 1 3 5 5 N 1.46505 * 109.47415 * 175.00215 * 4 2 1 6 6 C 1.34764 * 120.00088 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00231 * 359.97438 * 6 5 4 8 8 C 1.50709 * 120.00157 * 179.97438 * 6 5 4 9 9 C 1.50697 * 109.47229 * 179.97438 * 8 6 5 10 10 N 1.31871 * 119.63256 * 90.00162 * 9 8 6 11 11 C 1.31842 * 121.74994 * 180.02562 * 10 9 8 12 12 C 1.38233 * 120.82254 * 359.97438 * 11 10 9 13 13 C 1.38595 * 119.18678 * 0.02562 * 12 11 10 14 14 C 1.38419 * 119.63891 * 270.02280 * 9 8 6 15 15 F 1.35095 * 120.44208 * 0.02562 * 14 9 8 16 16 N 1.46906 * 109.47094 * 240.00375 * 2 1 3 17 17 C 1.46902 * 110.99943 * 84.99641 * 16 2 1 18 18 C 1.50707 * 109.46747 * 179.97438 * 17 16 2 19 19 O 1.21287 * 119.99773 * 0.02562 * 18 17 16 20 20 N 1.34775 * 119.99603 * 179.97438 * 18 17 16 21 21 C 1.37097 * 119.99607 * 179.97438 * 20 18 17 22 22 H 1.07994 * 120.00107 * 0.02562 * 21 20 18 23 23 C 1.38956 * 119.99653 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00189 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99689 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47340 * 60.00032 * 25 23 21 27 27 H 1.48496 * 109.46795 * 179.97438 * 25 23 21 28 28 H 1.48491 * 109.46854 * 299.99807 * 25 23 21 29 29 H 1.09001 * 109.47174 * 299.99550 * 1 2 3 30 30 H 1.09002 * 109.47164 * 59.99907 * 1 2 3 31 31 H 1.09004 * 109.47251 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47122 * 54.99714 * 4 2 1 33 33 H 1.09002 * 109.47076 * 294.99846 * 4 2 1 34 34 H 0.96996 * 119.99363 * 359.97438 * 5 4 2 35 35 H 1.09003 * 109.46431 * 60.00117 * 8 6 5 36 36 H 1.09002 * 109.46889 * 300.00179 * 8 6 5 37 37 H 1.08004 * 119.59540 * 180.02562 * 11 10 9 38 38 H 1.08005 * 120.41114 * 180.02562 * 12 11 10 39 39 H 1.08000 * 120.79771 * 179.72835 * 13 12 11 40 40 H 1.00901 * 110.99587 * 321.04339 * 16 2 1 41 41 H 1.08993 * 109.47078 * 299.99964 * 17 16 2 42 42 H 1.09004 * 109.47024 * 60.00212 * 17 16 2 43 43 H 0.97005 * 120.00377 * 0.02562 * 20 18 17 44 44 H 0.96995 * 119.99597 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5001 -0.8264 1.1905 6 6 4.1731 -1.4282 2.1910 7 8 3.5701 -1.8825 3.1402 8 6 5.6750 -1.5369 2.1304 9 6 6.1775 -2.2461 3.3614 10 7 6.3003 -3.5591 3.3531 11 6 6.7351 -4.2219 4.4065 12 6 7.0814 -3.5574 5.5681 13 6 6.9664 -2.1771 5.6171 14 6 6.5045 -1.5123 4.4887 15 9 6.3756 -0.1676 4.4912 16 7 2.0196 -0.6924 -1.1995 17 6 2.0823 0.2227 -2.3469 18 6 2.5884 -0.5214 -3.5558 19 8 2.8687 -1.6983 -3.4700 20 7 2.7285 0.1207 -4.7325 21 6 3.1894 -0.5561 -5.8321 22 1 3.4398 -1.6038 -5.7555 23 6 3.3343 0.1061 -7.0451 24 7 3.0301 1.3812 -7.1381 25 14 3.9616 -0.8162 -8.5435 26 1 3.0406 -1.9386 -8.8553 27 1 4.0244 0.1087 -9.7035 28 1 5.3178 -1.3520 -8.2630 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6054 -1.7198 1.2950 33 1 1.7517 -0.1584 2.1369 34 1 3.9823 -0.4627 0.4315 35 1 6.1098 -0.5384 2.0838 36 1 5.9630 -2.1004 1.2429 37 1 6.8226 -5.2975 4.3612 38 1 7.4372 -4.1071 6.4271 39 1 7.2256 -1.6321 6.5127 40 1 1.4495 -1.4979 -1.4101 41 1 1.0870 0.6164 -2.5525 42 1 2.7588 1.0463 -2.1182 43 1 2.5039 1.0619 -4.8012 44 1 3.1316 1.8434 -7.9848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265813553.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:04 Heat of formation + Delta-G solvation = -85.093861 kcal Electronic energy + Delta-G solvation = -28072.788757 eV Core-core repulsion = 23746.447382 eV Total energy + Delta-G solvation = -4326.341375 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.25197 -40.55768 -39.43805 -38.42513 -36.92598 -34.14646 -33.73576 -33.48558 -32.17010 -31.32098 -30.73847 -28.78766 -26.47329 -25.92907 -23.97895 -23.86778 -22.93437 -21.02323 -20.32051 -19.32237 -18.00787 -17.93973 -17.56306 -17.23168 -16.86090 -16.20626 -15.91603 -15.89198 -15.45306 -15.12598 -14.67897 -14.57637 -14.30089 -14.04666 -13.96619 -13.90025 -13.48057 -13.41357 -13.21426 -13.05140 -12.80728 -12.57917 -12.30822 -12.20103 -12.03199 -11.69014 -11.59461 -11.41849 -11.04556 -10.99390 -10.46011 -10.27274 -10.23558 -9.92391 -9.86643 -9.52375 -9.13313 -8.97087 -8.52493 -8.13625 -7.98813 -6.44141 -3.85030 0.59279 0.77862 2.66570 3.05268 3.18621 3.24609 3.28958 3.47271 3.70212 3.87560 3.97718 4.04322 4.25285 4.28085 4.37568 4.58409 4.76962 4.80417 4.96121 5.05503 5.09405 5.12013 5.19345 5.25261 5.30275 5.43518 5.48486 5.52029 5.61900 5.66428 5.68679 5.74445 5.87170 5.98271 6.03294 6.23302 6.28567 6.49738 7.11974 7.52836 7.55611 7.56740 7.60152 8.03437 8.26333 8.58361 9.15403 9.51439 10.02724 10.73386 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013918 B = 0.002095 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.317794 B =13365.054755 C =14530.118900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.068 3.932 3 H 0.084 0.916 4 C 0.135 3.865 5 N -0.709 5.709 6 C 0.522 3.478 7 O -0.547 6.547 8 C -0.100 4.100 9 C 0.131 3.869 10 N -0.446 5.446 11 C 0.094 3.906 12 C -0.148 4.148 13 C -0.109 4.109 14 C 0.060 3.940 15 F -0.128 7.128 16 N -0.664 5.664 17 C 0.050 3.950 18 C 0.439 3.561 19 O -0.582 6.582 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.273 1.273 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.411 0.589 35 H 0.113 0.887 36 H 0.124 0.876 37 H 0.165 0.835 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.354 0.646 41 H 0.045 0.955 42 H 0.086 0.914 43 H 0.392 0.608 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.323 -1.383 23.527 23.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.043 4.043 3 H 0.103 0.897 4 C 0.011 3.989 5 N -0.360 5.360 6 C 0.308 3.692 7 O -0.425 6.425 8 C -0.140 4.140 9 C -0.009 4.009 10 N -0.154 5.154 11 C -0.064 4.064 12 C -0.168 4.168 13 C -0.135 4.135 14 C 0.038 3.962 15 F -0.107 7.107 16 N -0.296 5.296 17 C -0.083 4.083 18 C 0.224 3.776 19 O -0.466 6.466 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.247 0.753 35 H 0.131 0.869 36 H 0.142 0.858 37 H 0.182 0.818 38 H 0.163 0.837 39 H 0.165 0.835 40 H 0.174 0.826 41 H 0.063 0.937 42 H 0.104 0.896 43 H 0.225 0.775 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.516 -2.699 23.470 24.053 hybrid contribution -0.400 1.211 -0.665 1.438 sum 4.116 -1.488 22.805 23.222 Atomic orbital electron populations 1.22435 0.96252 1.02739 1.02604 1.21855 0.93383 0.98321 0.90740 0.89744 1.21322 0.80066 1.00931 0.96619 1.45721 1.07790 1.59225 1.23298 1.20112 0.88893 0.77714 0.82527 1.90697 1.70204 1.47884 1.33726 1.20582 0.93766 1.02458 0.97205 1.20650 0.96565 0.89985 0.93691 1.67514 1.11035 1.07132 1.29730 1.22844 0.94461 1.00838 0.88224 1.22079 1.00794 0.93825 1.00104 1.21627 0.98811 0.95389 0.97722 1.18508 1.03272 0.78239 0.96176 1.91512 1.93605 1.28710 1.96830 1.60184 1.57722 1.09196 1.02535 1.21722 1.00047 0.95629 0.90906 1.19805 0.85305 0.88263 0.84193 1.90537 1.55295 1.16216 1.84592 1.41861 1.57693 1.12465 1.07944 1.19649 1.40067 0.96445 0.86783 0.87972 1.25266 0.97618 0.95780 0.99265 1.69601 1.48554 1.08844 1.27299 0.85917 0.79479 0.78821 0.80010 1.19921 1.20991 1.19856 0.91865 0.91911 0.91973 0.91539 0.91443 0.75281 0.86896 0.85822 0.81820 0.83737 0.83529 0.82619 0.93715 0.89623 0.77484 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 9.16 37.16 0.34 -1.40 16 2 C 0.07 0.74 2.75 -67.71 -0.19 0.56 16 3 H 0.08 0.85 7.80 -51.93 -0.40 0.45 16 4 C 0.14 1.58 5.37 -4.04 -0.02 1.56 16 5 N -0.71 -8.66 5.39 -60.29 -0.32 -8.99 16 6 C 0.52 7.15 7.82 -10.99 -0.09 7.07 16 7 O -0.55 -9.38 16.03 5.56 0.09 -9.29 16 8 C -0.10 -1.12 5.82 -29.03 -0.17 -1.29 16 9 C 0.13 1.60 5.28 -82.51 -0.44 1.16 16 10 N -0.45 -5.53 10.27 -9.42 -0.10 -5.63 16 11 C 0.09 0.85 11.18 -17.55 -0.20 0.65 16 12 C -0.15 -1.07 10.11 -39.45 -0.40 -1.47 16 13 C -0.11 -0.92 10.16 -39.21 -0.40 -1.31 16 14 C 0.06 0.66 7.27 -39.28 -0.29 0.37 16 15 F -0.13 -1.45 16.49 2.25 0.04 -1.41 16 16 N -0.66 -9.54 5.31 -107.99 -0.57 -10.12 16 17 C 0.05 0.79 5.97 -4.97 -0.03 0.76 16 18 C 0.44 9.88 7.82 -10.98 -0.09 9.79 16 19 O -0.58 -15.26 15.78 5.55 0.09 -15.18 16 20 N -0.56 -13.82 5.29 -10.96 -0.06 -13.87 16 21 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 22 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 23 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 24 N -0.90 -24.13 13.05 55.50 0.72 -23.41 16 25 Si 0.93 20.82 29.55 -169.99 -5.02 15.79 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 28 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.63 7.45 -51.93 -0.39 0.24 16 31 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.41 4.73 8.14 -40.82 -0.33 4.39 16 35 H 0.11 1.00 7.63 -51.93 -0.40 0.60 16 36 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.16 0.99 8.06 -52.48 -0.42 0.56 16 38 H 0.14 0.54 8.06 -52.48 -0.42 0.12 16 39 H 0.15 0.84 8.06 -52.49 -0.42 0.41 16 40 H 0.35 5.55 8.17 -39.29 -0.32 5.23 16 41 H 0.04 0.65 7.43 -51.93 -0.39 0.27 16 42 H 0.09 1.23 8.06 -51.93 -0.42 0.82 16 43 H 0.39 9.18 7.90 -40.82 -0.32 8.86 16 44 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 385.30 15.07 5.81 5.81 Total: -1.00 -34.47 385.30 -7.39 -41.85 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -5.86 Total: 15.84 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: -2.19 Total: 8.60 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: -0.33 Total: -62.01 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: 0.18 Total: -24.46 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.47 -7.39 -41.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265813553.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.239 kcal (2) G-P(sol) polarization free energy of solvation -34.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds