Wall clock time and date at job start Tue Mar 31 2020 20:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47251 * 2 1 4 4 C 1.52994 * 109.47363 * 120.00326 * 2 1 3 5 5 N 1.46505 * 109.47415 * 175.00215 * 4 2 1 6 6 C 1.34764 * 120.00088 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00231 * 359.97438 * 6 5 4 8 8 C 1.50709 * 120.00157 * 179.97438 * 6 5 4 9 9 C 1.50697 * 109.47229 * 179.97438 * 8 6 5 10 10 N 1.31871 * 119.63256 * 90.00162 * 9 8 6 11 11 C 1.31842 * 121.74994 * 180.02562 * 10 9 8 12 12 C 1.38233 * 120.82254 * 359.97438 * 11 10 9 13 13 C 1.38595 * 119.18678 * 0.02562 * 12 11 10 14 14 C 1.38419 * 119.63891 * 270.02280 * 9 8 6 15 15 F 1.35095 * 120.44208 * 0.02562 * 14 9 8 16 16 N 1.46906 * 109.47094 * 240.00375 * 2 1 3 17 17 C 1.46902 * 110.99943 * 84.99641 * 16 2 1 18 18 C 1.50707 * 109.46747 * 179.97438 * 17 16 2 19 19 O 1.21287 * 119.99773 * 0.02562 * 18 17 16 20 20 N 1.34775 * 119.99603 * 179.97438 * 18 17 16 21 21 C 1.37097 * 119.99607 * 179.97438 * 20 18 17 22 22 H 1.07994 * 120.00107 * 0.02562 * 21 20 18 23 23 C 1.38956 * 119.99653 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00189 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99689 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47340 * 60.00032 * 25 23 21 27 27 H 1.48496 * 109.46795 * 179.97438 * 25 23 21 28 28 H 1.48491 * 109.46854 * 299.99807 * 25 23 21 29 29 H 1.09001 * 109.47174 * 299.99550 * 1 2 3 30 30 H 1.09002 * 109.47164 * 59.99907 * 1 2 3 31 31 H 1.09004 * 109.47251 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47122 * 54.99714 * 4 2 1 33 33 H 1.09002 * 109.47076 * 294.99846 * 4 2 1 34 34 H 0.96996 * 119.99363 * 359.97438 * 5 4 2 35 35 H 1.09003 * 109.46431 * 60.00117 * 8 6 5 36 36 H 1.09002 * 109.46889 * 300.00179 * 8 6 5 37 37 H 1.08004 * 119.59540 * 180.02562 * 11 10 9 38 38 H 1.08005 * 120.41114 * 180.02562 * 12 11 10 39 39 H 1.08000 * 120.79771 * 179.72835 * 13 12 11 40 40 H 1.00901 * 110.99587 * 321.04339 * 16 2 1 41 41 H 1.08993 * 109.47078 * 299.99964 * 17 16 2 42 42 H 1.09004 * 109.47024 * 60.00212 * 17 16 2 43 43 H 0.97005 * 120.00377 * 0.02562 * 20 18 17 44 44 H 0.96995 * 119.99597 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5001 -0.8264 1.1905 6 6 4.1731 -1.4282 2.1910 7 8 3.5701 -1.8825 3.1402 8 6 5.6750 -1.5369 2.1304 9 6 6.1775 -2.2461 3.3614 10 7 6.3003 -3.5591 3.3531 11 6 6.7351 -4.2219 4.4065 12 6 7.0814 -3.5574 5.5681 13 6 6.9664 -2.1771 5.6171 14 6 6.5045 -1.5123 4.4887 15 9 6.3756 -0.1676 4.4912 16 7 2.0196 -0.6924 -1.1995 17 6 2.0823 0.2227 -2.3469 18 6 2.5884 -0.5214 -3.5558 19 8 2.8687 -1.6983 -3.4700 20 7 2.7285 0.1207 -4.7325 21 6 3.1894 -0.5561 -5.8321 22 1 3.4398 -1.6038 -5.7555 23 6 3.3343 0.1061 -7.0451 24 7 3.0301 1.3812 -7.1381 25 14 3.9616 -0.8162 -8.5435 26 1 3.0406 -1.9386 -8.8553 27 1 4.0244 0.1087 -9.7035 28 1 5.3178 -1.3520 -8.2630 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6054 -1.7198 1.2950 33 1 1.7517 -0.1584 2.1369 34 1 3.9823 -0.4627 0.4315 35 1 6.1098 -0.5384 2.0838 36 1 5.9630 -2.1004 1.2429 37 1 6.8226 -5.2975 4.3612 38 1 7.4372 -4.1071 6.4271 39 1 7.2256 -1.6321 6.5127 40 1 1.4495 -1.4979 -1.4101 41 1 1.0870 0.6164 -2.5525 42 1 2.7588 1.0463 -2.1182 43 1 2.5039 1.0619 -4.8012 44 1 3.1316 1.8434 -7.9848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265813553.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:03 Heat of formation + Delta-G solvation = -112.161774 kcal Electronic energy + Delta-G solvation = -28073.962510 eV Core-core repulsion = 23746.447382 eV Total energy + Delta-G solvation = -4327.515128 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.05045 -41.36670 -40.45554 -40.07958 -38.13682 -35.95578 -35.01646 -34.24462 -33.25857 -32.92575 -31.89536 -29.59263 -27.94966 -26.95702 -25.62064 -24.59802 -23.70581 -22.00312 -21.31708 -21.07949 -19.90041 -18.75490 -18.36642 -18.22213 -17.83018 -17.50485 -16.99354 -16.77276 -16.63714 -16.41828 -16.30926 -15.93476 -15.51977 -15.20640 -14.92263 -14.80831 -14.71489 -14.37217 -14.14489 -14.09116 -13.80931 -13.66369 -13.47596 -13.40755 -13.09213 -13.04430 -12.91385 -12.75379 -12.51537 -12.40834 -12.12011 -11.89910 -11.48165 -11.13827 -10.82431 -10.61498 -10.31935 -10.02119 -9.99099 -9.87729 -9.33769 -8.45021 -5.93135 -0.12280 0.10246 1.40578 1.42692 1.53052 1.60933 2.08952 2.17618 2.30150 2.69273 2.91451 2.98445 3.22764 3.23682 3.54194 3.55643 3.74667 3.85566 3.93042 3.98995 4.12554 4.32262 4.33099 4.36586 4.39954 4.50689 4.57426 4.63131 4.65265 4.71060 4.79111 4.88941 4.91328 4.99715 5.01570 5.25097 5.42658 5.49327 5.62806 5.90355 6.11311 6.36273 6.57857 6.62646 6.84593 7.15147 7.23589 7.59671 8.15253 8.71932 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013918 B = 0.002095 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.317794 B =13365.054755 C =14530.118900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.077 3.923 3 H 0.102 0.898 4 C 0.136 3.864 5 N -0.703 5.703 6 C 0.519 3.481 7 O -0.586 6.586 8 C -0.097 4.097 9 C 0.103 3.897 10 N -0.483 5.483 11 C 0.081 3.919 12 C -0.133 4.133 13 C -0.109 4.109 14 C 0.038 3.962 15 F -0.135 7.135 16 N -0.674 5.674 17 C 0.066 3.934 18 C 0.438 3.562 19 O -0.623 6.623 20 N -0.574 5.574 21 C -0.332 4.332 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.990 3.010 26 H -0.273 1.273 27 H -0.271 1.271 28 H -0.272 1.272 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.415 0.585 35 H 0.133 0.867 36 H 0.125 0.875 37 H 0.190 0.810 38 H 0.187 0.813 39 H 0.175 0.825 40 H 0.345 0.655 41 H 0.067 0.933 42 H 0.110 0.890 43 H 0.397 0.603 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.716 -0.819 24.773 25.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.033 4.033 3 H 0.120 0.880 4 C 0.012 3.988 5 N -0.354 5.354 6 C 0.305 3.695 7 O -0.467 6.467 8 C -0.137 4.137 9 C -0.035 4.035 10 N -0.192 5.192 11 C -0.076 4.076 12 C -0.152 4.152 13 C -0.135 4.135 14 C 0.016 3.984 15 F -0.114 7.114 16 N -0.306 5.306 17 C -0.066 4.066 18 C 0.225 3.775 19 O -0.510 6.510 20 N -0.211 5.211 21 C -0.462 4.462 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.560 5.560 25 Si 0.814 3.186 26 H -0.199 1.199 27 H -0.196 1.196 28 H -0.198 1.198 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.252 0.748 35 H 0.150 0.850 36 H 0.143 0.857 37 H 0.207 0.793 38 H 0.204 0.796 39 H 0.193 0.807 40 H 0.164 0.836 41 H 0.085 0.915 42 H 0.128 0.872 43 H 0.231 0.769 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.901 -2.088 24.710 25.278 hybrid contribution -0.519 0.964 -0.937 1.441 sum 4.383 -1.124 23.773 24.199 Atomic orbital electron populations 1.22386 0.94898 1.02762 1.03540 1.21860 0.94364 0.98504 0.88534 0.87952 1.21352 0.79700 1.00316 0.97453 1.45754 1.08119 1.58542 1.22996 1.20540 0.89897 0.76980 0.82048 1.90662 1.71146 1.49629 1.35239 1.20602 0.92058 1.03638 0.97421 1.20753 0.97973 0.90381 0.94436 1.67483 1.12516 1.07491 1.31699 1.23441 0.93756 1.02178 0.88235 1.22525 0.98709 0.93456 1.00544 1.22062 0.97619 0.96143 0.97705 1.18757 1.04478 0.78103 0.97038 1.91482 1.93840 1.29175 1.96921 1.60154 1.58459 1.09082 1.02934 1.21579 1.01338 0.95281 0.88406 1.20942 0.83338 0.88007 0.85194 1.90510 1.56587 1.18389 1.85465 1.41927 1.58359 1.12635 1.08189 1.19596 1.42059 0.95919 0.88599 0.90443 1.25997 0.97343 0.96615 1.01317 1.69658 1.48662 1.09595 1.28134 0.85030 0.78727 0.77834 0.77014 1.19851 1.19580 1.19762 0.89995 0.91831 0.92491 0.93197 0.90477 0.74775 0.84951 0.85741 0.79327 0.79582 0.80740 0.83638 0.91467 0.87175 0.76949 0.91361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.04 9.16 71.98 0.66 -2.38 16 2 C 0.08 1.55 2.75 44.91 0.12 1.67 16 3 H 0.10 1.75 7.80 -2.38 -0.02 1.73 16 4 C 0.14 3.09 5.37 86.38 0.46 3.55 16 5 N -0.70 -17.04 5.39 -463.06 -2.50 -19.53 16 6 C 0.52 14.48 7.82 87.66 0.69 15.17 16 7 O -0.59 -20.61 16.03 -3.04 -0.05 -20.66 16 8 C -0.10 -2.24 5.82 29.10 0.17 -2.07 16 9 C 0.10 2.57 5.28 42.60 0.22 2.79 16 10 N -0.48 -12.08 10.27 -183.72 -1.89 -13.96 16 11 C 0.08 1.37 11.18 84.69 0.95 2.32 16 12 C -0.13 -1.58 10.11 22.35 0.23 -1.35 16 13 C -0.11 -1.63 10.16 22.51 0.23 -1.40 16 14 C 0.04 0.83 7.27 22.47 0.16 0.99 16 15 F -0.14 -3.06 16.49 44.97 0.74 -2.32 16 16 N -0.67 -18.69 5.31 -495.56 -2.63 -21.33 16 17 C 0.07 2.01 5.97 85.56 0.51 2.52 16 18 C 0.44 19.74 7.82 87.66 0.69 20.43 16 19 O -0.62 -33.38 15.78 -3.05 -0.05 -33.43 16 20 N -0.57 -28.41 5.29 -306.98 -1.62 -30.03 16 21 C -0.33 -18.52 9.68 84.04 0.81 -17.71 16 22 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 24 N -0.92 -48.82 13.05 21.67 0.28 -48.54 16 25 Si 0.99 42.55 29.55 68.60 2.03 44.58 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 27 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 28 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 1.11 7.45 -2.39 -0.02 1.09 16 31 H 0.06 1.05 8.13 -2.38 -0.02 1.03 16 32 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.42 9.31 8.14 -92.71 -0.75 8.56 16 35 H 0.13 2.37 7.63 -2.39 -0.02 2.35 16 36 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 37 H 0.19 1.95 8.06 -2.91 -0.02 1.92 16 38 H 0.19 0.58 8.06 -2.91 -0.02 0.55 16 39 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 40 H 0.34 10.74 8.17 -89.69 -0.73 10.00 16 41 H 0.07 1.79 7.43 -2.39 -0.02 1.78 16 42 H 0.11 2.87 8.06 -2.39 -0.02 2.85 16 43 H 0.40 18.56 7.90 -92.70 -0.73 17.83 16 44 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -76.97 385.30 -0.47 -77.44 By element: Atomic # 1 Polarization: 44.61 SS G_CDS: -1.15 Total: 43.46 kcal Atomic # 6 Polarization: 17.95 SS G_CDS: 6.37 Total: 24.32 kcal Atomic # 7 Polarization: -125.03 SS G_CDS: -8.36 Total: -133.39 kcal Atomic # 8 Polarization: -53.99 SS G_CDS: -0.10 Total: -54.09 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.74 Total: -2.32 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -76.97 -0.47 -77.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265813553.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.726 kcal (2) G-P(sol) polarization free energy of solvation -76.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds