Wall clock time and date at job start Tue Mar 31 2020 21:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.46735 * 2 1 4 4 C 1.46893 * 111.00315 * 59.18405 * 3 2 1 5 5 C 1.52999 * 109.47217 * 66.04262 * 4 3 2 6 6 N 1.46507 * 109.47085 * 180.02562 * 5 4 3 7 7 C 1.34779 * 119.99784 * 179.97438 * 6 5 4 8 8 O 1.21556 * 120.00019 * 0.02562 * 7 6 5 9 9 C 1.47837 * 120.00015 * 179.97438 * 7 6 5 10 10 C 1.39560 * 120.54556 * 0.02562 * 9 7 6 11 11 N 1.31663 * 120.62331 * 179.97438 * 10 9 7 12 12 C 1.31939 * 121.90437 * 359.97155 * 11 10 9 13 13 C 1.38530 * 121.04849 * 0.02562 * 12 11 10 14 14 F 1.35101 * 120.37596 * 180.02562 * 13 12 11 15 15 C 1.38617 * 119.25196 * 0.02562 * 13 12 11 16 16 C 1.46895 * 111.00185 * 295.22572 * 3 2 1 17 17 C 1.50702 * 109.47475 * 288.24240 * 16 3 2 18 18 O 1.21292 * 119.99793 * 354.29559 * 17 16 3 19 19 N 1.34778 * 120.00465 * 174.30344 * 17 16 3 20 20 C 1.37088 * 120.00003 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00432 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99951 * 179.97438 * 20 19 17 23 23 N 1.31416 * 120.00000 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00364 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46764 * 60.00162 * 24 22 20 26 26 H 1.48495 * 109.47416 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.46955 * 300.00322 * 24 22 20 28 28 H 1.08997 * 109.47499 * 299.98798 * 1 2 3 29 29 H 1.09002 * 109.46741 * 59.98941 * 1 2 3 30 30 H 1.08998 * 109.46881 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47351 * 240.00437 * 2 1 3 32 32 H 1.08996 * 109.47044 * 119.99773 * 2 1 3 33 33 H 1.09002 * 109.46908 * 306.04422 * 4 3 2 34 34 H 1.08999 * 109.47575 * 186.04447 * 4 3 2 35 35 H 1.08997 * 109.47315 * 60.00620 * 5 4 3 36 36 H 1.08998 * 109.47184 * 300.00020 * 5 4 3 37 37 H 0.96987 * 119.99955 * 359.97438 * 6 5 4 38 38 H 1.07997 * 119.68804 * 359.96595 * 10 9 7 39 39 H 1.08005 * 119.47472 * 180.02562 * 12 11 10 40 40 H 1.08002 * 120.86835 * 179.97438 * 15 13 12 41 41 H 1.09000 * 109.47303 * 48.24327 * 16 3 2 42 42 H 1.09002 * 109.47515 * 168.23784 * 16 3 2 43 43 H 0.97007 * 119.99412 * 359.97438 * 19 17 16 44 44 H 0.96996 * 120.00393 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5327 2.1156 1.1777 5 6 2.1474 1.5122 2.4422 6 7 1.6613 2.2404 3.6169 7 6 2.0716 1.8817 4.8496 8 8 2.8454 0.9543 4.9866 9 6 1.5816 2.6169 6.0349 10 6 0.6935 3.6837 5.8906 11 7 0.2557 4.3392 6.9453 12 6 0.6312 4.0211 8.1694 13 6 1.5101 2.9750 8.3980 14 9 1.8852 2.6606 9.6573 15 6 2.0005 2.2544 7.3201 16 6 1.6440 2.0762 -1.2406 17 6 2.4640 1.5369 -2.3842 18 8 3.3516 0.7384 -2.1703 19 7 2.2113 1.9420 -3.6446 20 6 2.9570 1.4510 -4.6849 21 1 3.7472 0.7399 -4.4945 22 6 2.6961 1.8682 -5.9843 23 7 1.7342 2.7331 -6.2161 24 14 3.7125 1.1997 -7.4019 25 1 3.5660 -0.2768 -7.4629 26 1 3.2381 1.7968 -8.6761 27 1 5.1412 1.5472 -7.1936 28 1 -0.3634 0.5136 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.4466 2.0388 1.2295 34 1 1.8195 3.1642 1.0991 35 1 3.2334 1.5890 2.3906 36 1 1.8605 0.4636 2.5209 37 1 1.0442 2.9806 3.5075 38 1 0.3623 3.9745 4.9047 39 1 0.2473 4.5852 9.0066 40 1 2.6873 1.4342 7.4683 41 1 0.5857 1.9107 -1.4426 42 1 1.8303 3.1447 -1.1320 43 1 1.5012 2.5805 -3.8156 44 1 1.5518 3.0241 -7.1232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267238288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:10 Heat of formation + Delta-G solvation = -65.393677 kcal Electronic energy + Delta-G solvation = -27834.166736 eV Core-core repulsion = 23508.679625 eV Total energy + Delta-G solvation = -4325.487111 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.56795 -41.11165 -39.53840 -38.85114 -37.16038 -35.09002 -33.84869 -33.19552 -31.89378 -31.25518 -30.38200 -29.46022 -26.49145 -25.22224 -24.31939 -24.26378 -23.43797 -21.27890 -20.51008 -19.01997 -18.72582 -18.00683 -17.80804 -17.55004 -16.65769 -16.49091 -16.35328 -16.26100 -15.83327 -15.49737 -15.05049 -14.58113 -14.48095 -14.41308 -14.03690 -13.90200 -13.79937 -13.39853 -13.37437 -13.10969 -13.00127 -12.97844 -12.17755 -11.93778 -11.74081 -11.53115 -11.45047 -11.15150 -10.96203 -10.91827 -10.56659 -10.50327 -10.44376 -10.21292 -10.11220 -9.71548 -9.47501 -9.38151 -8.49823 -7.97273 -7.90274 -6.41659 -3.82344 -0.12922 0.34052 2.29151 2.53021 3.11867 3.20118 3.25768 3.30100 3.33515 3.62680 3.90151 3.92023 4.04475 4.08943 4.16489 4.26586 4.46133 4.68566 4.85458 4.93621 5.05371 5.12098 5.20521 5.25488 5.27654 5.33552 5.37032 5.56233 5.62528 5.73129 5.79635 5.82818 5.85118 5.95706 6.08562 6.21697 6.29268 6.47742 6.98708 7.03760 7.17641 7.27068 7.55128 7.72115 8.06347 8.62327 9.18658 9.54833 10.07127 10.76050 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.031287 B = 0.001668 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.733159 B =16783.885978 C =17017.622370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.046 3.954 3 N -0.507 5.507 4 C 0.038 3.962 5 C 0.121 3.879 6 N -0.719 5.719 7 C 0.562 3.438 8 O -0.524 6.524 9 C -0.154 4.154 10 C 0.124 3.876 11 N -0.457 5.457 12 C 0.097 3.903 13 C 0.045 3.955 14 F -0.124 7.124 15 C -0.052 4.052 16 C 0.043 3.957 17 C 0.444 3.556 18 O -0.575 6.575 19 N -0.566 5.566 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.044 0.956 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.399 0.601 38 H 0.169 0.831 39 H 0.174 0.826 40 H 0.162 0.838 41 H 0.054 0.946 42 H 0.088 0.912 43 H 0.391 0.609 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.440 4.061 25.616 26.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.081 4.081 3 N -0.230 5.230 4 C -0.091 4.091 5 C -0.002 4.002 6 N -0.371 5.371 7 C 0.347 3.653 8 O -0.401 6.401 9 C -0.159 4.159 10 C -0.035 4.035 11 N -0.164 5.164 12 C -0.062 4.062 13 C 0.024 3.976 14 F -0.102 7.102 15 C -0.079 4.079 16 C -0.088 4.088 17 C 0.229 3.771 18 O -0.458 6.458 19 N -0.203 5.203 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.234 0.766 38 H 0.186 0.814 39 H 0.191 0.809 40 H 0.180 0.820 41 H 0.072 0.928 42 H 0.106 0.894 43 H 0.224 0.776 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.374 3.590 25.575 26.601 hybrid contribution -0.577 -0.172 -0.650 0.887 sum -6.951 3.418 24.925 26.101 Atomic orbital electron populations 1.22462 0.98908 1.02366 1.01579 1.22280 0.91905 0.89828 1.04117 1.61657 1.59151 1.02065 1.00127 1.22293 0.97729 0.98725 0.90303 1.21431 1.00529 0.96038 0.82195 1.45820 1.48811 1.36442 1.05992 1.17827 0.81251 0.83566 0.82643 1.90842 1.34341 1.28933 1.85939 1.20941 1.01318 0.99344 0.94310 1.23114 0.91750 0.90130 0.98464 1.67783 1.22834 1.27523 0.98297 1.23189 0.93274 0.93665 0.96030 1.18677 1.00102 0.98575 0.80292 1.91571 1.89908 1.92176 1.36584 1.21826 0.97258 0.98618 0.90188 1.21924 0.98069 0.98824 0.90032 1.19721 0.87485 0.86379 0.83501 1.90525 1.34287 1.37084 1.83917 1.41857 1.32900 1.40669 1.04871 1.19642 1.14500 1.23780 0.84875 0.87985 1.25245 0.97215 0.96722 0.98744 1.69600 1.30616 1.32009 1.22232 0.85928 0.79760 0.79021 0.79574 1.19949 1.21018 1.19907 0.92888 0.92219 0.92080 0.88734 0.90887 0.93782 0.90185 0.89757 0.90729 0.76552 0.81450 0.80855 0.82018 0.92790 0.89424 0.77576 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.33 9.26 37.16 0.34 -1.99 16 2 C 0.05 0.68 5.52 -3.82 -0.02 0.66 16 3 N -0.51 -7.60 4.31 -236.08 -1.02 -8.62 16 4 C 0.04 0.40 4.81 -3.83 -0.02 0.38 16 5 C 0.12 1.27 5.60 -4.04 -0.02 1.25 16 6 N -0.72 -5.75 5.51 -61.25 -0.34 -6.08 16 7 C 0.56 5.58 7.78 -12.33 -0.10 5.49 16 8 O -0.52 -7.31 16.42 5.32 0.09 -7.22 16 9 C -0.15 -1.19 5.89 -104.83 -0.62 -1.81 16 10 C 0.12 0.77 10.71 -17.13 -0.18 0.59 16 11 N -0.46 -3.25 10.34 -12.86 -0.13 -3.39 16 12 C 0.10 0.59 11.16 -17.40 -0.19 0.39 16 13 C 0.05 0.31 7.33 -39.33 -0.29 0.02 16 14 F -0.12 -0.92 17.28 2.25 0.04 -0.88 16 15 C -0.05 -0.40 9.70 -38.80 -0.38 -0.78 16 16 C 0.04 0.70 5.34 -4.98 -0.03 0.68 16 17 C 0.44 10.12 7.36 -10.98 -0.08 10.04 16 18 O -0.57 -15.21 14.70 5.55 0.08 -15.13 16 19 N -0.57 -13.97 5.29 -10.96 -0.06 -14.03 16 20 C -0.30 -8.20 9.68 -14.94 -0.14 -8.34 16 21 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.22 13.05 55.50 0.72 -23.50 16 24 Si 0.93 20.90 29.55 -169.99 -5.02 15.87 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 H 0.05 0.54 6.26 -51.93 -0.33 0.21 16 29 H 0.06 0.77 6.29 -51.93 -0.33 0.44 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 1.73 6.54 -51.93 -0.34 1.39 16 32 H 0.07 0.98 6.51 -51.93 -0.34 0.65 16 33 H 0.04 0.40 5.98 -51.93 -0.31 0.09 16 34 H 0.08 0.75 7.86 -51.93 -0.41 0.34 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 0.85 6.57 -51.93 -0.34 0.51 16 37 H 0.40 1.90 6.54 -40.82 -0.27 1.63 16 38 H 0.17 0.54 6.42 -52.49 -0.34 0.21 16 39 H 0.17 0.58 8.06 -52.48 -0.42 0.16 16 40 H 0.16 1.25 7.74 -52.49 -0.41 0.84 16 41 H 0.05 0.81 5.97 -51.93 -0.31 0.50 16 42 H 0.09 1.29 7.81 -51.93 -0.41 0.88 16 43 H 0.39 9.21 7.90 -40.82 -0.32 8.89 16 44 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 371.61 15.07 5.60 5.60 Total: -1.00 -33.73 371.61 -7.07 -40.81 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -5.22 Total: 9.49 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -1.82 Total: 7.07 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: -0.82 Total: -55.62 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: 0.17 Total: -22.35 kcal Atomic # 9 Polarization: -0.92 SS G_CDS: 0.04 Total: -0.88 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.73 -7.07 -40.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267238288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.584 kcal (2) G-P(sol) polarization free energy of solvation -33.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds