Wall clock time and date at job start Tue Mar 31 2020 21:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.46735 * 2 1 4 4 C 1.46893 * 111.00315 * 59.18405 * 3 2 1 5 5 C 1.52999 * 109.47217 * 66.04262 * 4 3 2 6 6 N 1.46507 * 109.47085 * 180.02562 * 5 4 3 7 7 C 1.34779 * 119.99784 * 179.97438 * 6 5 4 8 8 O 1.21556 * 120.00019 * 0.02562 * 7 6 5 9 9 C 1.47837 * 120.00015 * 179.97438 * 7 6 5 10 10 C 1.39560 * 120.54556 * 0.02562 * 9 7 6 11 11 N 1.31663 * 120.62331 * 179.97438 * 10 9 7 12 12 C 1.31939 * 121.90437 * 359.97155 * 11 10 9 13 13 C 1.38530 * 121.04849 * 0.02562 * 12 11 10 14 14 F 1.35101 * 120.37596 * 180.02562 * 13 12 11 15 15 C 1.38617 * 119.25196 * 0.02562 * 13 12 11 16 16 C 1.46895 * 111.00185 * 295.22572 * 3 2 1 17 17 C 1.50702 * 109.47475 * 288.24240 * 16 3 2 18 18 O 1.21292 * 119.99793 * 354.29559 * 17 16 3 19 19 N 1.34778 * 120.00465 * 174.30344 * 17 16 3 20 20 C 1.37088 * 120.00003 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00432 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99951 * 179.97438 * 20 19 17 23 23 N 1.31416 * 120.00000 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00364 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46764 * 60.00162 * 24 22 20 26 26 H 1.48495 * 109.47416 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.46955 * 300.00322 * 24 22 20 28 28 H 1.08997 * 109.47499 * 299.98798 * 1 2 3 29 29 H 1.09002 * 109.46741 * 59.98941 * 1 2 3 30 30 H 1.08998 * 109.46881 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47351 * 240.00437 * 2 1 3 32 32 H 1.08996 * 109.47044 * 119.99773 * 2 1 3 33 33 H 1.09002 * 109.46908 * 306.04422 * 4 3 2 34 34 H 1.08999 * 109.47575 * 186.04447 * 4 3 2 35 35 H 1.08997 * 109.47315 * 60.00620 * 5 4 3 36 36 H 1.08998 * 109.47184 * 300.00020 * 5 4 3 37 37 H 0.96987 * 119.99955 * 359.97438 * 6 5 4 38 38 H 1.07997 * 119.68804 * 359.96595 * 10 9 7 39 39 H 1.08005 * 119.47472 * 180.02562 * 12 11 10 40 40 H 1.08002 * 120.86835 * 179.97438 * 15 13 12 41 41 H 1.09000 * 109.47303 * 48.24327 * 16 3 2 42 42 H 1.09002 * 109.47515 * 168.23784 * 16 3 2 43 43 H 0.97007 * 119.99412 * 359.97438 * 19 17 16 44 44 H 0.96996 * 120.00393 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5327 2.1156 1.1777 5 6 2.1474 1.5122 2.4422 6 7 1.6613 2.2404 3.6169 7 6 2.0716 1.8817 4.8496 8 8 2.8454 0.9543 4.9866 9 6 1.5816 2.6169 6.0349 10 6 0.6935 3.6837 5.8906 11 7 0.2557 4.3392 6.9453 12 6 0.6312 4.0211 8.1694 13 6 1.5101 2.9750 8.3980 14 9 1.8852 2.6606 9.6573 15 6 2.0005 2.2544 7.3201 16 6 1.6440 2.0762 -1.2406 17 6 2.4640 1.5369 -2.3842 18 8 3.3516 0.7384 -2.1703 19 7 2.2113 1.9420 -3.6446 20 6 2.9570 1.4510 -4.6849 21 1 3.7472 0.7399 -4.4945 22 6 2.6961 1.8682 -5.9843 23 7 1.7342 2.7331 -6.2161 24 14 3.7125 1.1997 -7.4019 25 1 3.5660 -0.2768 -7.4629 26 1 3.2381 1.7968 -8.6761 27 1 5.1412 1.5472 -7.1936 28 1 -0.3634 0.5136 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.4466 2.0388 1.2295 34 1 1.8195 3.1642 1.0991 35 1 3.2334 1.5890 2.3906 36 1 1.8605 0.4636 2.5209 37 1 1.0442 2.9806 3.5075 38 1 0.3623 3.9745 4.9047 39 1 0.2473 4.5852 9.0066 40 1 2.6873 1.4342 7.4683 41 1 0.5857 1.9107 -1.4426 42 1 1.8303 3.1447 -1.1320 43 1 1.5012 2.5805 -3.8156 44 1 1.5518 3.0241 -7.1232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267238288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:10 Heat of formation + Delta-G solvation = -91.923821 kcal Electronic energy + Delta-G solvation = -27835.317169 eV Core-core repulsion = 23508.679625 eV Total energy + Delta-G solvation = -4326.637545 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.11069 -41.73677 -40.56143 -40.06235 -38.58353 -36.08607 -35.73533 -33.78014 -33.23880 -32.48683 -31.42613 -30.52297 -27.84089 -26.22250 -25.72493 -24.80673 -24.39736 -22.02709 -21.71746 -20.63646 -19.77080 -19.41392 -18.56879 -18.04146 -17.70077 -17.30838 -17.29089 -17.12458 -16.96139 -16.52069 -16.43571 -16.10853 -15.70410 -15.27311 -15.00280 -14.93279 -14.68037 -14.54038 -14.40759 -14.27980 -13.96194 -13.64489 -13.50071 -13.41221 -13.03784 -12.95959 -12.74287 -12.49608 -12.40457 -12.15335 -12.08310 -11.70449 -11.63504 -11.39132 -11.15878 -10.74182 -10.32358 -10.27782 -10.09740 -9.96255 -9.12142 -8.43582 -5.91490 -0.67325 -0.19401 1.40811 1.42521 1.52818 1.61206 1.77767 2.11971 2.31174 2.54525 2.78021 2.92056 3.15471 3.23682 3.45885 3.52305 3.56759 3.63104 3.83604 3.94825 4.03957 4.17331 4.30792 4.34687 4.38216 4.43517 4.52261 4.61277 4.62635 4.64981 4.73243 4.87638 4.90398 5.02998 5.15047 5.24394 5.34132 5.36975 5.43736 5.90549 6.10617 6.22059 6.35777 6.53977 6.65542 7.02536 7.17542 7.62231 8.19248 8.73475 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.031287 B = 0.001668 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.733159 B =16783.885978 C =17017.622370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.049 3.951 3 N -0.532 5.532 4 C 0.045 3.955 5 C 0.130 3.870 6 N -0.700 5.700 7 C 0.564 3.436 8 O -0.573 6.573 9 C -0.164 4.164 10 C 0.137 3.863 11 N -0.471 5.471 12 C 0.108 3.892 13 C 0.038 3.962 14 F -0.129 7.129 15 C -0.060 4.060 16 C 0.057 3.943 17 C 0.441 3.559 18 O -0.617 6.617 19 N -0.576 5.576 20 C -0.331 4.331 21 H 0.076 0.924 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.989 3.011 25 H -0.274 1.274 26 H -0.270 1.270 27 H -0.274 1.274 28 H 0.079 0.921 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.419 0.581 38 H 0.200 0.800 39 H 0.202 0.798 40 H 0.153 0.847 41 H 0.077 0.923 42 H 0.114 0.886 43 H 0.396 0.604 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.424 5.907 26.437 28.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.079 4.079 3 N -0.256 5.256 4 C -0.083 4.083 5 C 0.005 3.995 6 N -0.353 5.353 7 C 0.350 3.650 8 O -0.453 6.453 9 C -0.169 4.169 10 C -0.021 4.021 11 N -0.178 5.178 12 C -0.050 4.050 13 C 0.017 3.983 14 F -0.107 7.107 15 C -0.088 4.088 16 C -0.074 4.074 17 C 0.228 3.772 18 O -0.503 6.503 19 N -0.214 5.214 20 C -0.461 4.461 21 H 0.094 0.906 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.813 3.187 25 H -0.199 1.199 26 H -0.195 1.195 27 H -0.199 1.199 28 H 0.098 0.902 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.257 0.743 38 H 0.216 0.784 39 H 0.218 0.782 40 H 0.171 0.829 41 H 0.095 0.905 42 H 0.132 0.868 43 H 0.230 0.770 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.408 5.485 26.405 28.249 hybrid contribution 0.052 -0.749 -0.799 1.096 sum -8.355 4.736 25.606 27.348 Atomic orbital electron populations 1.22365 0.96421 1.03148 1.02377 1.22135 0.93901 0.89682 1.02170 1.61510 1.60695 1.02444 1.00964 1.22320 0.99158 0.98909 0.87868 1.21172 0.99145 0.95944 0.83196 1.45574 1.48529 1.36479 1.04730 1.18137 0.80420 0.82930 0.83504 1.90823 1.36652 1.31198 1.86632 1.20745 1.02693 1.00304 0.93179 1.23543 0.90185 0.88682 0.99671 1.67910 1.23325 1.27854 0.98715 1.23628 0.91893 0.92804 0.96637 1.18701 1.00712 0.99064 0.79842 1.91560 1.90064 1.92302 1.36802 1.21880 0.97315 0.98675 0.90882 1.21769 0.97709 0.99738 0.88164 1.20908 0.87009 0.84928 0.84331 1.90498 1.36310 1.38764 1.84719 1.41921 1.33070 1.41173 1.05255 1.19582 1.15238 1.24723 0.86569 0.90584 1.25963 0.98096 0.96716 1.00402 1.69654 1.31171 1.32278 1.23005 0.85044 0.78221 0.78367 0.77039 1.19900 1.19489 1.19904 0.90193 0.93011 0.91489 0.93378 0.90205 0.90990 0.88281 0.92312 0.91764 0.74253 0.78380 0.78165 0.82935 0.90540 0.86785 0.77014 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.03 9.26 71.98 0.67 -3.37 16 2 C 0.05 1.42 5.52 86.30 0.48 1.90 16 3 N -0.53 -15.29 4.31 -900.82 -3.88 -19.17 16 4 C 0.05 0.80 4.81 86.30 0.41 1.22 16 5 C 0.13 2.53 5.60 86.38 0.48 3.01 16 6 N -0.70 -9.63 5.51 -465.97 -2.57 -12.19 16 7 C 0.56 10.71 7.78 86.78 0.68 11.38 16 8 O -0.57 -16.36 16.42 -3.89 -0.06 -16.42 16 9 C -0.16 -2.32 5.89 -20.00 -0.12 -2.44 16 10 C 0.14 1.30 10.71 85.04 0.91 2.21 16 11 N -0.47 -5.32 10.34 -194.59 -2.01 -7.33 16 12 C 0.11 1.05 11.16 84.75 0.95 2.00 16 13 C 0.04 0.48 7.33 22.43 0.16 0.65 16 14 F -0.13 -1.80 17.28 44.97 0.78 -1.03 16 15 C -0.06 -0.91 9.70 22.78 0.22 -0.69 16 16 C 0.06 1.79 5.34 85.56 0.46 2.25 16 17 C 0.44 20.39 7.36 87.66 0.65 21.03 16 18 O -0.62 -33.93 14.70 -3.07 -0.05 -33.98 16 19 N -0.58 -28.93 5.29 -306.98 -1.62 -30.55 16 20 C -0.33 -18.69 9.68 84.04 0.81 -17.88 16 21 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 22 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 23 N -0.92 -49.00 13.05 21.66 0.28 -48.72 16 24 Si 0.99 42.89 29.55 68.60 2.03 44.91 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 27 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 28 H 0.08 1.31 6.26 -2.39 -0.01 1.30 16 29 H 0.05 1.22 6.29 -2.39 -0.02 1.20 16 30 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.05 1.84 6.54 -2.39 -0.02 1.82 16 32 H 0.08 2.16 6.51 -2.39 -0.02 2.14 16 33 H 0.07 0.94 5.98 -2.39 -0.01 0.93 16 34 H 0.10 1.45 7.86 -2.39 -0.02 1.43 16 35 H 0.06 1.47 8.14 -2.39 -0.02 1.46 16 36 H 0.06 1.41 6.57 -2.39 -0.02 1.39 16 37 H 0.42 2.38 6.54 -92.72 -0.61 1.77 16 38 H 0.20 0.43 6.42 -2.91 -0.02 0.41 16 39 H 0.20 0.72 8.06 -2.91 -0.02 0.70 16 40 H 0.15 2.51 7.74 -2.91 -0.02 2.49 16 41 H 0.08 2.09 5.97 -2.39 -0.01 2.07 16 42 H 0.11 3.01 7.81 -2.39 -0.02 2.99 16 43 H 0.40 18.71 7.90 -92.70 -0.73 17.98 16 44 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -76.59 371.61 -0.14 -76.72 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: -0.26 Total: 26.66 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: 7.22 Total: 21.10 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -9.80 Total: -117.96 kcal Atomic # 8 Polarization: -50.29 SS G_CDS: -0.11 Total: -50.40 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.78 Total: -1.03 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -76.59 -0.14 -76.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267238288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.202 kcal (2) G-P(sol) polarization free energy of solvation -76.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds