Wall clock time and date at job start Tue Mar 31 2020 20:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47066 * 2 1 4 4 C 1.53006 * 109.47002 * 119.99631 * 2 1 3 5 5 N 1.46898 * 109.47138 * 295.00272 * 4 2 1 6 6 C 1.46906 * 110.99888 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47140 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99678 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99614 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99518 * 180.02562 * 9 7 6 11 11 H 1.07996 * 120.00466 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00085 * 179.97438 * 10 9 7 13 13 N 1.31408 * 120.00498 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 119.99920 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47441 * 89.99762 * 14 12 10 16 16 H 1.48495 * 109.46914 * 210.00201 * 14 12 10 17 17 H 1.48508 * 109.46806 * 329.99819 * 14 12 10 18 18 C 1.52993 * 109.47412 * 239.99914 * 2 1 3 19 19 N 1.46497 * 109.47162 * 64.99947 * 18 2 1 20 20 C 1.34781 * 120.00055 * 180.02562 * 19 18 2 21 21 O 1.21527 * 119.99979 * 0.02562 * 20 19 18 22 22 C 1.48053 * 119.99758 * 179.97438 * 20 19 18 23 23 C 1.39385 * 119.68920 * 179.72408 * 22 20 19 24 24 C 1.38468 * 119.09148 * 179.79745 * 23 22 20 25 25 C 1.38898 * 118.46995 * 0.47486 * 24 23 22 26 26 F 1.35095 * 120.35460 * 179.77038 * 25 24 23 27 27 C 1.38885 * 119.29701 * 359.74999 * 25 24 23 28 28 N 1.31457 * 120.85813 * 0.02562 * 27 25 24 29 29 H 1.09000 * 109.46646 * 60.00270 * 1 2 3 30 30 H 1.08997 * 109.46495 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47106 * 299.99913 * 1 2 3 32 32 H 1.08997 * 109.46770 * 175.00218 * 4 2 1 33 33 H 1.08995 * 109.47019 * 55.00432 * 4 2 1 34 34 H 1.00901 * 111.00121 * 56.04666 * 5 4 2 35 35 H 1.09004 * 109.47040 * 299.99934 * 6 5 4 36 36 H 1.09000 * 109.47033 * 59.99886 * 6 5 4 37 37 H 0.96996 * 120.00269 * 359.97438 * 9 7 6 38 38 H 0.97002 * 120.00283 * 180.02562 * 13 12 10 39 39 H 1.09005 * 109.47499 * 184.99789 * 18 2 1 40 40 H 1.09001 * 109.47061 * 305.00314 * 18 2 1 41 41 H 0.96998 * 119.99871 * 359.97438 * 19 18 2 42 42 H 1.07996 * 120.45439 * 0.02562 * 23 22 20 43 43 H 1.07995 * 120.76155 * 180.22633 * 24 23 22 44 44 H 1.07997 * 119.56914 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6513 0.0375 2.4457 6 6 2.1257 -0.6264 3.6673 7 6 1.7097 0.1794 4.8709 8 8 1.0796 1.2055 4.7253 9 7 2.0379 -0.2402 6.1089 10 6 1.6589 0.4926 7.2038 11 1 1.0979 1.4062 7.0744 12 6 1.9967 0.0598 8.4803 13 7 1.6340 0.7624 9.5298 14 14 2.9666 -1.5209 8.7044 15 1 4.4199 -1.2160 8.6926 16 1 2.6023 -2.1454 10.0015 17 1 2.6484 -2.4580 7.5971 18 6 2.0401 -0.7212 -1.2491 19 7 1.6526 0.0353 -2.4423 20 6 1.9957 -0.4137 -3.6659 21 8 2.6263 -1.4463 -3.7794 22 6 1.6036 0.3507 -4.8717 23 6 1.9669 -0.1165 -6.1337 24 6 1.5899 0.6059 -7.2532 25 6 0.8692 1.7794 -7.0723 26 9 0.4860 2.5164 -8.1377 27 6 0.5463 2.1869 -5.7844 28 7 0.9142 1.4776 -4.7406 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1263 -0.7994 1.2057 33 1 1.6055 -1.7197 1.2953 34 1 0.6528 0.1794 2.4753 35 1 1.6921 -1.6245 3.7302 36 1 3.2127 -0.7036 3.6401 37 1 2.5415 -1.0610 6.2252 38 1 1.8701 0.4604 10.4209 39 1 3.1264 -0.7994 -1.2055 40 1 1.6054 -1.7198 -1.2951 41 1 1.1483 0.8590 -2.3517 42 1 2.5314 -1.0314 -6.2371 43 1 1.8538 0.2668 -8.2440 44 1 -0.0143 3.0984 -5.6387 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267979437.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:30 Heat of formation + Delta-G solvation = -78.968705 kcal Electronic energy + Delta-G solvation = -27102.314796 eV Core-core repulsion = 22776.239027 eV Total energy + Delta-G solvation = -4326.075769 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.69395 -41.14278 -39.46658 -38.55538 -37.35251 -35.07593 -33.94513 -33.33563 -32.47219 -31.67992 -31.50162 -27.58400 -27.21935 -25.36993 -24.70735 -24.17278 -22.96857 -21.23809 -20.55380 -19.40011 -18.78117 -18.33064 -18.12019 -17.92867 -16.61183 -16.53735 -15.99972 -15.84396 -15.71227 -15.57654 -15.00447 -14.79318 -14.62471 -14.51237 -14.28332 -13.97441 -13.80635 -13.52434 -13.33007 -13.19957 -13.06358 -12.81000 -12.72620 -12.30498 -12.00970 -11.74660 -11.27962 -11.18539 -11.03830 -10.97038 -10.80567 -10.70860 -10.59325 -10.26102 -9.97432 -9.73754 -9.57160 -9.38169 -8.59355 -8.19626 -8.14305 -6.30976 -3.82448 -0.16772 0.35953 2.13357 2.61586 3.02673 3.07329 3.15014 3.15361 3.23237 3.51882 3.74303 3.98408 4.03526 4.07589 4.11068 4.20345 4.59883 4.64813 4.68173 4.79834 4.91177 4.97738 5.12936 5.15895 5.21963 5.30921 5.34439 5.46926 5.52933 5.63444 5.69344 5.79214 5.80153 5.81260 5.92320 5.98545 6.08424 6.16085 6.81996 7.07933 7.16429 7.56580 7.58800 7.73942 8.14666 8.59979 8.95128 9.42652 9.82906 10.82123 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.033729 B = 0.001470 C = 0.001421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.950383 B =19047.616411 C =19700.239986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.102 4.102 3 H 0.091 0.909 4 C 0.067 3.933 5 N -0.668 5.668 6 C 0.048 3.952 7 C 0.450 3.550 8 O -0.565 6.565 9 N -0.591 5.591 10 C -0.306 4.306 11 H 0.120 0.880 12 C 0.042 3.958 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.270 1.270 18 C 0.123 3.877 19 N -0.704 5.704 20 C 0.571 3.429 21 O -0.532 6.532 22 C 0.068 3.932 23 C -0.081 4.081 24 C -0.115 4.115 25 C 0.071 3.929 26 F -0.123 7.123 27 C 0.077 3.923 28 N -0.430 5.430 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.031 0.969 34 H 0.351 0.649 35 H 0.045 0.955 36 H 0.088 0.912 37 H 0.371 0.629 38 H 0.273 0.727 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.413 0.587 42 H 0.160 0.840 43 H 0.157 0.843 44 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.109 -3.893 -34.070 34.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.121 4.121 3 H 0.109 0.891 4 C -0.064 4.064 5 N -0.302 5.302 6 C -0.085 4.085 7 C 0.235 3.765 8 O -0.447 6.447 9 N -0.230 5.230 10 C -0.434 4.434 11 H 0.137 0.863 12 C -0.161 4.161 13 N -0.521 5.521 14 Si 0.706 3.294 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.195 1.195 18 C -0.001 4.001 19 N -0.355 5.355 20 C 0.355 3.645 21 O -0.408 6.408 22 C -0.070 4.070 23 C -0.102 4.102 24 C -0.142 4.142 25 C 0.049 3.951 26 F -0.102 7.102 27 C -0.084 4.084 28 N -0.141 5.141 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.172 0.828 35 H 0.063 0.937 36 H 0.106 0.894 37 H 0.203 0.797 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.250 0.750 42 H 0.178 0.822 43 H 0.174 0.826 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.442 -3.206 -33.164 33.322 hybrid contribution 0.072 -1.699 -0.595 1.802 sum 0.515 -4.905 -33.760 34.118 Atomic orbital electron populations 1.21915 0.94590 1.02069 1.02548 1.21370 0.96617 1.01313 0.92840 0.89051 1.21880 1.00801 0.94399 0.89279 1.60071 1.21224 1.48999 0.99897 1.21707 1.01296 0.95397 0.90119 1.19714 0.85257 0.87894 0.83591 1.90561 1.43058 1.25668 1.85396 1.42205 1.51129 1.23682 1.05991 1.19436 1.33702 1.07608 0.82687 0.86283 1.25036 0.97838 0.98098 0.95154 1.69620 1.45615 1.38524 0.98378 0.86669 0.80893 0.83241 0.78555 1.19591 1.20201 1.19529 1.21484 1.00513 0.95275 0.82823 1.45851 1.56446 1.28066 1.05164 1.17693 0.79738 0.84351 0.82698 1.90818 1.40083 1.23569 1.86337 1.21285 0.98307 0.93268 0.94166 1.22078 0.96976 1.00538 0.90596 1.21729 0.97571 0.93557 1.01316 1.19094 0.98795 0.91924 0.85295 1.91567 1.88825 1.75566 1.54201 1.22984 0.99106 1.00391 0.85923 1.67610 1.08476 1.04683 1.33302 0.92511 0.92652 0.91310 0.90695 0.95099 0.82844 0.93734 0.89413 0.79676 0.91618 0.90811 0.90998 0.75045 0.82213 0.82575 0.80584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.84 37.16 0.33 -1.02 16 2 C -0.10 -0.93 2.63 -90.62 -0.24 -1.17 16 3 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 4 C 0.07 0.71 5.14 -3.82 -0.02 0.69 16 5 N -0.67 -9.89 6.12 -115.05 -0.70 -10.59 16 6 C 0.05 0.77 6.17 -4.97 -0.03 0.74 16 7 C 0.45 10.14 7.82 -10.99 -0.09 10.06 16 8 O -0.56 -15.08 15.78 5.55 0.09 -15.00 16 9 N -0.59 -14.03 5.09 -10.97 -0.06 -14.08 16 10 C -0.31 -8.65 10.16 -14.93 -0.15 -8.80 16 11 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 12 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 13 N -0.88 -25.73 13.96 55.50 0.77 -24.96 16 14 Si 0.88 19.33 27.74 -169.99 -4.71 14.61 16 15 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 16 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 18 C 0.12 1.07 5.06 -4.05 -0.02 1.04 16 19 N -0.70 -6.06 5.27 -61.19 -0.32 -6.39 16 20 C 0.57 5.67 7.81 -12.23 -0.10 5.57 16 21 O -0.53 -6.68 16.32 5.34 0.09 -6.59 16 22 C 0.07 0.56 6.75 -83.02 -0.56 0.00 16 23 C -0.08 -0.51 9.63 -39.07 -0.38 -0.89 16 24 C -0.12 -0.55 10.15 -39.25 -0.40 -0.95 16 25 C 0.07 0.39 7.36 -39.10 -0.29 0.10 16 26 F -0.12 -0.73 17.28 2.25 0.04 -0.69 16 27 C 0.08 0.44 11.17 -17.47 -0.20 0.25 16 28 N -0.43 -3.23 9.53 -9.74 -0.09 -3.32 16 29 H 0.06 0.44 7.18 -51.93 -0.37 0.06 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.69 6.68 -51.93 -0.35 0.35 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.35 5.37 6.69 -39.29 -0.26 5.11 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.37 7.71 5.76 -40.82 -0.24 7.47 16 38 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.41 3.14 6.98 -40.82 -0.28 2.85 16 42 H 0.16 0.88 7.64 -52.49 -0.40 0.47 16 43 H 0.16 0.35 8.06 -52.49 -0.42 -0.07 16 44 H 0.18 0.57 8.06 -52.49 -0.42 0.15 16 LS Contribution 379.88 15.07 5.72 5.72 Total: -1.00 -34.50 379.88 -7.09 -41.59 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -5.69 Total: 13.02 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: -2.23 Total: 6.68 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -0.40 Total: -59.34 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: 0.17 Total: -21.59 kcal Atomic # 9 Polarization: -0.73 SS G_CDS: 0.04 Total: -0.69 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.71 Total: 14.61 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.50 -7.09 -41.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267979437.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.381 kcal (2) G-P(sol) polarization free energy of solvation -34.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds