Wall clock time and date at job start Tue Mar 31 2020 20:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47066 * 2 1 4 4 C 1.53006 * 109.47002 * 119.99631 * 2 1 3 5 5 N 1.46898 * 109.47138 * 295.00272 * 4 2 1 6 6 C 1.46906 * 110.99888 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47140 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99678 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99614 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99518 * 180.02562 * 9 7 6 11 11 H 1.07996 * 120.00466 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00085 * 179.97438 * 10 9 7 13 13 N 1.31408 * 120.00498 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 119.99920 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47441 * 89.99762 * 14 12 10 16 16 H 1.48495 * 109.46914 * 210.00201 * 14 12 10 17 17 H 1.48508 * 109.46806 * 329.99819 * 14 12 10 18 18 C 1.52993 * 109.47412 * 239.99914 * 2 1 3 19 19 N 1.46497 * 109.47162 * 64.99947 * 18 2 1 20 20 C 1.34781 * 120.00055 * 180.02562 * 19 18 2 21 21 O 1.21527 * 119.99979 * 0.02562 * 20 19 18 22 22 C 1.48053 * 119.99758 * 179.97438 * 20 19 18 23 23 C 1.39385 * 119.68920 * 179.72408 * 22 20 19 24 24 C 1.38468 * 119.09148 * 179.79745 * 23 22 20 25 25 C 1.38898 * 118.46995 * 0.47486 * 24 23 22 26 26 F 1.35095 * 120.35460 * 179.77038 * 25 24 23 27 27 C 1.38885 * 119.29701 * 359.74999 * 25 24 23 28 28 N 1.31457 * 120.85813 * 0.02562 * 27 25 24 29 29 H 1.09000 * 109.46646 * 60.00270 * 1 2 3 30 30 H 1.08997 * 109.46495 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47106 * 299.99913 * 1 2 3 32 32 H 1.08997 * 109.46770 * 175.00218 * 4 2 1 33 33 H 1.08995 * 109.47019 * 55.00432 * 4 2 1 34 34 H 1.00901 * 111.00121 * 56.04666 * 5 4 2 35 35 H 1.09004 * 109.47040 * 299.99934 * 6 5 4 36 36 H 1.09000 * 109.47033 * 59.99886 * 6 5 4 37 37 H 0.96996 * 120.00269 * 359.97438 * 9 7 6 38 38 H 0.97002 * 120.00283 * 180.02562 * 13 12 10 39 39 H 1.09005 * 109.47499 * 184.99789 * 18 2 1 40 40 H 1.09001 * 109.47061 * 305.00314 * 18 2 1 41 41 H 0.96998 * 119.99871 * 359.97438 * 19 18 2 42 42 H 1.07996 * 120.45439 * 0.02562 * 23 22 20 43 43 H 1.07995 * 120.76155 * 180.22633 * 24 23 22 44 44 H 1.07997 * 119.56914 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6513 0.0375 2.4457 6 6 2.1257 -0.6264 3.6673 7 6 1.7097 0.1794 4.8709 8 8 1.0796 1.2055 4.7253 9 7 2.0379 -0.2402 6.1089 10 6 1.6589 0.4926 7.2038 11 1 1.0979 1.4062 7.0744 12 6 1.9967 0.0598 8.4803 13 7 1.6340 0.7624 9.5298 14 14 2.9666 -1.5209 8.7044 15 1 4.4199 -1.2160 8.6926 16 1 2.6023 -2.1454 10.0015 17 1 2.6484 -2.4580 7.5971 18 6 2.0401 -0.7212 -1.2491 19 7 1.6526 0.0353 -2.4423 20 6 1.9957 -0.4137 -3.6659 21 8 2.6263 -1.4463 -3.7794 22 6 1.6036 0.3507 -4.8717 23 6 1.9669 -0.1165 -6.1337 24 6 1.5899 0.6059 -7.2532 25 6 0.8692 1.7794 -7.0723 26 9 0.4860 2.5164 -8.1377 27 6 0.5463 2.1869 -5.7844 28 7 0.9142 1.4776 -4.7406 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1263 -0.7994 1.2057 33 1 1.6055 -1.7197 1.2953 34 1 0.6528 0.1794 2.4753 35 1 1.6921 -1.6245 3.7302 36 1 3.2127 -0.7036 3.6401 37 1 2.5415 -1.0610 6.2252 38 1 1.8701 0.4604 10.4209 39 1 3.1264 -0.7994 -1.2055 40 1 1.6054 -1.7198 -1.2951 41 1 1.1483 0.8590 -2.3517 42 1 2.5314 -1.0314 -6.2371 43 1 1.8538 0.2668 -8.2440 44 1 -0.0143 3.0984 -5.6387 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267979437.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:30 Heat of formation + Delta-G solvation = -106.760078 kcal Electronic energy + Delta-G solvation = -27103.519920 eV Core-core repulsion = 22776.239027 eV Total energy + Delta-G solvation = -4327.280893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.13892 -41.70937 -40.34790 -40.06846 -38.32935 -36.23488 -35.72790 -33.94171 -33.72510 -33.22461 -32.10847 -28.93958 -27.92929 -26.61157 -25.49904 -24.94386 -24.03869 -21.91586 -21.41804 -21.18374 -20.27414 -19.31429 -18.64330 -18.44147 -17.86410 -17.23840 -17.02700 -16.79685 -16.71851 -16.51535 -16.26593 -15.77300 -15.63086 -15.30057 -15.04605 -14.95802 -14.83263 -14.54737 -14.32291 -14.31815 -14.20608 -13.80567 -13.67277 -13.50759 -13.34358 -13.12060 -12.80685 -12.40407 -12.10585 -11.96109 -11.83991 -11.75444 -11.50717 -11.50002 -11.13805 -10.82224 -10.42609 -10.31764 -10.24022 -10.02191 -9.29965 -8.40641 -6.01625 -0.67739 -0.05473 1.31143 1.36741 1.45429 1.50941 1.95374 1.96870 2.23845 2.59765 2.73606 2.80083 3.02350 3.15840 3.43784 3.56755 3.66604 3.73714 3.90936 3.93953 4.00419 4.11481 4.19256 4.45211 4.53657 4.56612 4.58267 4.60057 4.69605 4.72710 4.80603 4.81016 4.96380 5.02429 5.22752 5.33853 5.38333 5.42445 5.53498 5.91573 6.06740 6.24697 6.41980 6.55916 6.60670 6.88830 7.03733 7.40695 7.97337 8.76975 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.033729 B = 0.001470 C = 0.001421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.950383 B =19047.616411 C =19700.239986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 H 0.082 0.918 4 C 0.068 3.932 5 N -0.687 5.687 6 C 0.061 3.939 7 C 0.448 3.552 8 O -0.615 6.615 9 N -0.591 5.591 10 C -0.330 4.330 11 H 0.055 0.945 12 C -0.014 4.014 13 N -0.934 5.934 14 Si 0.965 3.035 15 H -0.258 1.258 16 H -0.275 1.275 17 H -0.231 1.231 18 C 0.129 3.871 19 N -0.699 5.699 20 C 0.569 3.431 21 O -0.564 6.564 22 C 0.048 3.952 23 C -0.083 4.083 24 C -0.106 4.106 25 C 0.071 3.929 26 F -0.124 7.124 27 C 0.075 3.925 28 N -0.444 5.444 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.345 0.655 35 H 0.077 0.923 36 H 0.115 0.885 37 H 0.390 0.610 38 H 0.279 0.721 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.417 0.583 42 H 0.165 0.835 43 H 0.184 0.816 44 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.396 -6.381 -36.264 36.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 H 0.101 0.899 4 C -0.061 4.061 5 N -0.321 5.321 6 C -0.071 4.071 7 C 0.236 3.764 8 O -0.499 6.499 9 N -0.233 5.233 10 C -0.459 4.459 11 H 0.073 0.927 12 C -0.213 4.213 13 N -0.575 5.575 14 Si 0.785 3.215 15 H -0.182 1.182 16 H -0.201 1.201 17 H -0.154 1.154 18 C 0.005 3.995 19 N -0.350 5.350 20 C 0.354 3.646 21 O -0.443 6.443 22 C -0.090 4.090 23 C -0.103 4.103 24 C -0.132 4.132 25 C 0.049 3.951 26 F -0.102 7.102 27 C -0.086 4.086 28 N -0.155 5.155 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.065 0.935 34 H 0.165 0.835 35 H 0.095 0.905 36 H 0.133 0.867 37 H 0.226 0.774 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.255 0.745 42 H 0.183 0.817 43 H 0.201 0.799 44 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 1.728 -5.694 -35.386 35.882 hybrid contribution -0.424 -0.754 -0.011 0.866 sum 1.303 -6.449 -35.396 36.003 Atomic orbital electron populations 1.21882 0.94388 1.02334 1.02232 1.21226 0.96646 1.00682 0.92472 0.89921 1.21958 1.01515 0.94740 0.87909 1.60071 1.20961 1.50351 1.00673 1.21639 1.02943 0.95226 0.87324 1.21026 0.83114 0.87442 0.84861 1.90540 1.44833 1.28171 1.86356 1.42031 1.51818 1.24132 1.05287 1.19019 1.34810 1.06934 0.85187 0.92698 1.26114 0.98572 1.02800 0.93815 1.69804 1.47173 1.41253 0.99278 0.85361 0.78937 0.77536 0.79650 1.18204 1.20061 1.15380 1.21390 1.00357 0.95179 0.82545 1.45834 1.56050 1.28088 1.04984 1.17977 0.79157 0.84066 0.83385 1.90790 1.41684 1.24989 1.86857 1.21154 0.99790 0.93943 0.94064 1.22176 0.96934 1.00867 0.90359 1.21993 0.96340 0.92767 1.02077 1.19172 0.98650 0.92069 0.85186 1.91571 1.88825 1.75631 1.54217 1.23350 0.98791 1.00773 0.85735 1.67575 1.08940 1.04779 1.34159 0.91590 0.92078 0.92854 0.89710 0.93501 0.83518 0.90513 0.86726 0.77441 0.91156 0.90982 0.90898 0.74486 0.81704 0.79857 0.78476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 8.84 71.98 0.64 -1.85 16 2 C -0.09 -1.52 2.63 -10.79 -0.03 -1.55 16 3 H 0.08 1.55 8.14 -2.39 -0.02 1.54 16 4 C 0.07 1.29 5.14 86.31 0.44 1.73 16 5 N -0.69 -19.19 6.12 -517.92 -3.17 -22.36 16 6 C 0.06 1.81 6.17 85.56 0.53 2.34 16 7 C 0.45 20.07 7.82 87.66 0.69 20.76 16 8 O -0.61 -33.98 15.78 -3.06 -0.05 -34.03 16 9 N -0.59 -27.76 5.09 -306.99 -1.56 -29.33 16 10 C -0.33 -19.39 10.16 84.04 0.85 -18.54 16 11 H 0.05 3.84 7.39 -2.91 -0.02 3.82 16 12 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 13 N -0.93 -56.41 13.96 21.66 0.30 -56.11 16 14 Si 0.97 38.65 27.74 68.60 1.90 40.55 16 15 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 16 H -0.28 -10.96 7.11 99.48 0.71 -10.26 16 17 H -0.23 -7.71 6.52 99.48 0.65 -7.07 16 18 C 0.13 2.07 5.06 86.38 0.44 2.50 16 19 N -0.70 -11.50 5.27 -465.78 -2.46 -13.95 16 20 C 0.57 11.04 7.81 86.85 0.68 11.72 16 21 O -0.56 -14.02 16.32 -3.80 -0.06 -14.08 16 22 C 0.05 0.75 6.75 41.89 0.28 1.03 16 23 C -0.08 -0.94 9.63 22.60 0.22 -0.73 16 24 C -0.11 -0.80 10.15 22.48 0.23 -0.57 16 25 C 0.07 0.65 7.36 22.58 0.17 0.82 16 26 F -0.12 -1.23 17.28 44.97 0.78 -0.45 16 27 C 0.08 0.75 11.17 84.90 0.95 1.70 16 28 N -0.44 -6.24 9.53 -184.73 -1.76 -8.00 16 29 H 0.07 0.95 7.18 -2.39 -0.02 0.93 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 1.06 6.68 -2.39 -0.02 1.04 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.34 10.34 6.69 -89.69 -0.60 9.74 16 35 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 37 H 0.39 15.08 5.76 -92.71 -0.53 14.54 16 38 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 39 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.42 6.04 6.98 -92.71 -0.65 5.40 16 42 H 0.17 1.66 7.64 -2.91 -0.02 1.64 16 43 H 0.18 0.30 8.06 -2.91 -0.02 0.27 16 44 H 0.20 0.92 8.06 -2.91 -0.02 0.90 16 Total: -1.00 -80.31 379.88 -0.30 -80.61 By element: Atomic # 1 Polarization: 38.90 SS G_CDS: -0.77 Total: 38.14 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: 6.54 Total: 19.02 kcal Atomic # 7 Polarization: -121.10 SS G_CDS: -8.65 Total: -129.75 kcal Atomic # 8 Polarization: -48.01 SS G_CDS: -0.11 Total: -48.12 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.78 Total: -0.45 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 1.90 Total: 40.55 kcal Total: -80.31 -0.30 -80.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267979437.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.150 kcal (2) G-P(sol) polarization free energy of solvation -80.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds