Wall clock time and date at job start Tue Mar 31 2020 21:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47374 * 2 1 4 4 C 1.46499 * 119.99968 * 274.96158 * 3 2 1 5 5 C 1.52999 * 109.47071 * 270.00005 * 4 3 2 6 6 N 1.46899 * 109.47411 * 179.97438 * 5 4 3 7 7 C 1.46896 * 111.00003 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47255 * 179.97438 * 7 6 5 9 9 O 1.21298 * 119.99710 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00433 * 179.97438 * 8 7 6 11 11 C 1.37095 * 120.00035 * 179.97438 * 10 8 7 12 12 H 1.08002 * 120.00295 * 0.02562 * 11 10 8 13 13 C 1.38956 * 119.99953 * 180.02562 * 11 10 8 14 14 N 1.31406 * 119.99912 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00007 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.46885 * 90.00041 * 15 13 11 17 17 H 1.48494 * 109.47289 * 210.00123 * 15 13 11 18 18 H 1.48506 * 109.46905 * 330.00488 * 15 13 11 19 19 C 1.34777 * 120.00274 * 94.95622 * 3 2 1 20 20 O 1.21523 * 120.00117 * 185.53000 * 19 3 2 21 21 C 1.48001 * 119.99607 * 5.53634 * 19 3 2 22 22 C 1.39906 * 120.94417 * 54.94746 * 21 19 3 23 23 C 1.38035 * 119.03198 * 180.31584 * 22 21 19 24 24 N 1.31855 * 120.98457 * 359.68020 * 23 22 21 25 25 C 1.31716 * 122.09494 * 0.02562 * 24 23 22 26 26 C 1.38534 * 120.84980 * 0.02562 * 25 24 23 27 27 F 1.35101 * 120.54175 * 179.97438 * 26 25 24 28 28 H 1.09002 * 109.46728 * 59.99752 * 1 2 3 29 29 H 1.08996 * 109.47460 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46988 * 300.00397 * 1 2 3 31 31 H 1.09000 * 109.46988 * 239.99603 * 2 1 3 32 32 H 1.09002 * 109.46728 * 120.00248 * 2 1 3 33 33 H 1.09002 * 109.47272 * 29.99597 * 4 3 2 34 34 H 1.08998 * 109.47617 * 149.99992 * 4 3 2 35 35 H 1.09006 * 109.47202 * 300.00057 * 5 4 3 36 36 H 1.09002 * 109.47358 * 59.99444 * 5 4 3 37 37 H 1.00906 * 110.99713 * 56.04610 * 6 5 4 38 38 H 1.08999 * 109.47716 * 300.00147 * 7 6 5 39 39 H 1.08999 * 109.47130 * 60.00589 * 7 6 5 40 40 H 0.97004 * 119.99729 * 0.02562 * 10 8 7 41 41 H 0.97006 * 120.00069 * 179.97438 * 14 13 11 42 42 H 1.08000 * 120.47822 * 0.02562 * 22 21 19 43 43 H 1.08008 * 119.50505 * 179.70427 * 23 22 21 44 44 H 1.08006 * 119.57545 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1592 2.1083 -1.2640 5 6 3.5631 1.8824 -1.8287 6 7 3.7041 2.6110 -3.0965 7 6 5.0429 2.4173 -3.6689 8 6 5.1496 3.1773 -4.9658 9 8 4.2034 3.8178 -5.3730 10 7 6.2966 3.1462 -5.6729 11 6 6.3933 3.8372 -6.8530 12 1 5.5506 4.4069 -7.2159 13 6 7.5757 3.8047 -7.5822 14 7 7.6686 4.4675 -8.7130 15 14 9.0332 2.8189 -6.9548 16 1 8.9589 1.4339 -7.4851 17 1 10.2947 3.4563 -7.4101 18 1 9.0043 2.7829 -5.4705 19 6 2.3382 1.9829 1.1628 20 8 2.6468 3.1583 1.1740 21 6 2.3135 1.2122 2.4261 22 6 3.0479 0.0292 2.5615 23 6 2.9911 -0.6617 3.7551 24 7 2.2636 -0.2189 4.7617 25 6 1.5609 0.8923 4.6818 26 6 1.5582 1.6492 3.5215 27 9 0.8348 2.7877 3.4461 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.4183 1.7455 -1.9764 34 1 2.0047 3.1732 -1.0898 35 1 4.3040 2.2452 -1.1163 36 1 3.7176 0.8175 -2.0029 37 1 3.5019 3.5920 -2.9741 38 1 5.7939 2.7845 -2.9694 39 1 5.2082 1.3562 -3.8555 40 1 7.0534 2.6343 -5.3471 41 1 8.4942 4.4451 -9.2219 42 1 3.6468 -0.3406 1.7423 43 1 3.5512 -1.5785 3.8663 44 1 0.9793 1.2176 5.5318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268443009.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:46 Heat of formation + Delta-G solvation = -59.831105 kcal Electronic energy + Delta-G solvation = -28349.725258 eV Core-core repulsion = 24024.479358 eV Total energy + Delta-G solvation = -4325.245900 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.51910 -41.20645 -39.78793 -38.49564 -36.85004 -35.51151 -33.94094 -33.33642 -31.70718 -31.56527 -31.40802 -29.34866 -26.63342 -25.33721 -24.35621 -23.80927 -23.54944 -22.31741 -20.23652 -19.38324 -18.44224 -18.19782 -18.02304 -17.84911 -17.07620 -16.42816 -16.22460 -15.97720 -15.65378 -15.18801 -15.02153 -14.87784 -14.50161 -14.40367 -14.12822 -14.06775 -13.94569 -13.82781 -13.48466 -13.26046 -13.00770 -12.70110 -12.49440 -12.43360 -12.31445 -11.94382 -11.70887 -11.68500 -11.28416 -11.12815 -10.86360 -10.60715 -10.48326 -10.07418 -9.98548 -9.64012 -9.58455 -9.20828 -8.61845 -8.24125 -8.18124 -6.31895 -3.83371 0.06889 0.22413 2.05940 2.34354 2.93531 3.01548 3.05683 3.14054 3.31614 3.61580 3.72428 3.77803 4.02280 4.08592 4.11544 4.16096 4.40591 4.64309 4.68487 4.74428 4.83963 4.90258 4.95824 5.02291 5.06282 5.13863 5.21232 5.26061 5.29285 5.35526 5.54936 5.65818 5.68528 5.75239 5.79813 5.85123 5.89943 6.05967 6.80871 6.99193 7.10060 7.47862 7.56965 7.57845 8.13443 8.58621 8.93968 9.41303 9.81249 10.81175 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021096 B = 0.001952 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.960215 B =14342.995178 C =14717.175574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.092 3.908 3 N -0.599 5.599 4 C 0.115 3.885 5 C 0.046 3.954 6 N -0.666 5.666 7 C 0.050 3.950 8 C 0.450 3.550 9 O -0.564 6.564 10 N -0.590 5.590 11 C -0.305 4.305 12 H 0.120 0.880 13 C 0.041 3.959 14 N -0.881 5.881 15 Si 0.880 3.120 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.270 1.270 19 C 0.559 3.441 20 O -0.510 6.510 21 C -0.112 4.112 22 C -0.116 4.116 23 C 0.089 3.911 24 N -0.445 5.445 25 C 0.079 3.921 26 C 0.091 3.909 27 F -0.114 7.114 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.030 0.970 36 H 0.072 0.928 37 H 0.353 0.647 38 H 0.045 0.955 39 H 0.087 0.913 40 H 0.370 0.630 41 H 0.273 0.727 42 H 0.153 0.847 43 H 0.172 0.828 44 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.831 -15.760 27.237 33.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.031 4.031 3 N -0.332 5.332 4 C -0.007 4.007 5 C -0.085 4.085 6 N -0.299 5.299 7 C -0.083 4.083 8 C 0.235 3.765 9 O -0.446 6.446 10 N -0.230 5.230 11 C -0.434 4.434 12 H 0.138 0.862 13 C -0.162 4.162 14 N -0.521 5.521 15 Si 0.707 3.293 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.195 1.195 19 C 0.345 3.655 20 O -0.385 6.385 21 C -0.124 4.124 22 C -0.136 4.136 23 C -0.067 4.067 24 N -0.153 5.153 25 C -0.081 4.081 26 C 0.069 3.931 27 F -0.093 7.093 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.049 0.951 36 H 0.091 0.909 37 H 0.173 0.827 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.203 0.797 41 H 0.084 0.916 42 H 0.171 0.829 43 H 0.189 0.811 44 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -11.507 -15.541 27.124 33.311 hybrid contribution 1.795 0.418 0.078 1.844 sum -9.712 -15.124 27.201 32.603 Atomic orbital electron populations 1.22180 0.95254 1.02665 1.02832 1.21902 0.95198 0.81939 1.04043 1.47845 1.64465 1.14850 1.06038 1.21495 0.97633 0.98425 0.83129 1.22261 0.96087 0.99609 0.90515 1.60009 1.27682 1.17580 1.24615 1.21690 0.89866 1.01154 0.95587 1.19676 0.84012 0.86183 0.86602 1.90571 1.37644 1.45411 1.70942 1.42199 1.12472 1.46252 1.22036 1.19437 1.01703 1.26505 0.95735 0.86250 1.25048 0.97768 0.97564 0.95834 1.69621 1.27663 1.41054 1.13729 0.86662 0.82997 0.80787 0.78879 1.19594 1.20171 1.19548 1.18017 0.77908 0.86513 0.83063 1.90872 1.46610 1.14890 1.86119 1.20539 0.99754 0.97084 0.95008 1.22299 0.98318 0.92737 1.00287 1.22859 0.96016 0.99898 0.87957 1.67619 1.05071 1.12028 1.30617 1.22999 0.98176 0.90849 0.96055 1.18851 0.94004 0.85094 0.95182 1.91602 1.74502 1.46640 1.96514 0.91586 0.91056 0.92730 0.89301 0.89763 0.88729 0.89293 0.95149 0.90913 0.82692 0.93677 0.89452 0.79694 0.91601 0.82896 0.81064 0.80759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 10.24 37.16 0.38 -0.58 16 2 C 0.09 0.52 5.99 -4.04 -0.02 0.49 16 3 N -0.60 -5.36 2.47 -174.74 -0.43 -5.79 16 4 C 0.12 1.20 5.73 -4.04 -0.02 1.18 16 5 C 0.05 0.53 6.01 -3.83 -0.02 0.51 16 6 N -0.67 -10.17 6.13 -115.06 -0.70 -10.88 16 7 C 0.05 0.82 6.17 -4.98 -0.03 0.79 16 8 C 0.45 10.23 7.82 -10.99 -0.09 10.15 16 9 O -0.56 -15.20 15.78 5.54 0.09 -15.11 16 10 N -0.59 -14.09 5.09 -10.96 -0.06 -14.15 16 11 C -0.31 -8.67 10.16 -14.93 -0.15 -8.82 16 12 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 13 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 14 N -0.88 -25.78 13.96 55.50 0.77 -25.01 16 15 Si 0.88 19.35 27.74 -169.99 -4.71 14.63 16 16 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 17 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 19 C 0.56 6.24 6.95 -12.26 -0.09 6.16 16 20 O -0.51 -7.88 16.53 5.35 0.09 -7.79 16 21 C -0.11 -0.96 4.93 -104.59 -0.52 -1.48 16 22 C -0.12 -0.64 7.62 -39.03 -0.30 -0.93 16 23 C 0.09 0.44 11.17 -17.62 -0.20 0.24 16 24 N -0.45 -3.08 10.33 -13.25 -0.14 -3.21 16 25 C 0.08 0.53 11.17 -17.49 -0.20 0.34 16 26 C 0.09 0.80 7.33 -38.79 -0.28 0.51 16 27 F -0.11 -1.22 16.82 2.25 0.04 -1.18 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.41 8.11 -51.93 -0.42 -0.01 16 32 H 0.08 0.36 4.44 -51.93 -0.23 0.13 16 33 H 0.09 0.90 8.07 -51.93 -0.42 0.48 16 34 H 0.09 1.09 7.35 -51.93 -0.38 0.71 16 35 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.35 5.77 8.43 -39.29 -0.33 5.44 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.37 7.73 5.76 -40.82 -0.24 7.50 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.15 0.51 7.61 -52.49 -0.40 0.11 16 43 H 0.17 0.32 8.06 -52.48 -0.42 -0.10 16 44 H 0.18 0.74 8.06 -52.48 -0.42 0.32 16 LS Contribution 380.92 15.07 5.74 5.74 Total: -1.00 -36.34 380.92 -6.72 -43.06 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -5.78 Total: 10.10 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: -1.63 Total: 9.59 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: -0.56 Total: -59.04 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: 0.18 Total: -22.91 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 0.04 Total: -1.18 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.71 Total: 14.63 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.34 -6.72 -43.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268443009.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.769 kcal (2) G-P(sol) polarization free energy of solvation -36.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds