Wall clock time and date at job start Tue Mar 31 2020 21:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47374 * 2 1 4 4 C 1.46499 * 119.99968 * 274.96158 * 3 2 1 5 5 C 1.52999 * 109.47071 * 270.00005 * 4 3 2 6 6 N 1.46899 * 109.47411 * 179.97438 * 5 4 3 7 7 C 1.46896 * 111.00003 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47255 * 179.97438 * 7 6 5 9 9 O 1.21298 * 119.99710 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00433 * 179.97438 * 8 7 6 11 11 C 1.37095 * 120.00035 * 179.97438 * 10 8 7 12 12 H 1.08002 * 120.00295 * 0.02562 * 11 10 8 13 13 C 1.38956 * 119.99953 * 180.02562 * 11 10 8 14 14 N 1.31406 * 119.99912 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00007 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.46885 * 90.00041 * 15 13 11 17 17 H 1.48494 * 109.47289 * 210.00123 * 15 13 11 18 18 H 1.48506 * 109.46905 * 330.00488 * 15 13 11 19 19 C 1.34777 * 120.00274 * 94.95622 * 3 2 1 20 20 O 1.21523 * 120.00117 * 185.53000 * 19 3 2 21 21 C 1.48001 * 119.99607 * 5.53634 * 19 3 2 22 22 C 1.39906 * 120.94417 * 54.94746 * 21 19 3 23 23 C 1.38035 * 119.03198 * 180.31584 * 22 21 19 24 24 N 1.31855 * 120.98457 * 359.68020 * 23 22 21 25 25 C 1.31716 * 122.09494 * 0.02562 * 24 23 22 26 26 C 1.38534 * 120.84980 * 0.02562 * 25 24 23 27 27 F 1.35101 * 120.54175 * 179.97438 * 26 25 24 28 28 H 1.09002 * 109.46728 * 59.99752 * 1 2 3 29 29 H 1.08996 * 109.47460 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46988 * 300.00397 * 1 2 3 31 31 H 1.09000 * 109.46988 * 239.99603 * 2 1 3 32 32 H 1.09002 * 109.46728 * 120.00248 * 2 1 3 33 33 H 1.09002 * 109.47272 * 29.99597 * 4 3 2 34 34 H 1.08998 * 109.47617 * 149.99992 * 4 3 2 35 35 H 1.09006 * 109.47202 * 300.00057 * 5 4 3 36 36 H 1.09002 * 109.47358 * 59.99444 * 5 4 3 37 37 H 1.00906 * 110.99713 * 56.04610 * 6 5 4 38 38 H 1.08999 * 109.47716 * 300.00147 * 7 6 5 39 39 H 1.08999 * 109.47130 * 60.00589 * 7 6 5 40 40 H 0.97004 * 119.99729 * 0.02562 * 10 8 7 41 41 H 0.97006 * 120.00069 * 179.97438 * 14 13 11 42 42 H 1.08000 * 120.47822 * 0.02562 * 22 21 19 43 43 H 1.08008 * 119.50505 * 179.70427 * 23 22 21 44 44 H 1.08006 * 119.57545 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1592 2.1083 -1.2640 5 6 3.5631 1.8824 -1.8287 6 7 3.7041 2.6110 -3.0965 7 6 5.0429 2.4173 -3.6689 8 6 5.1496 3.1773 -4.9658 9 8 4.2034 3.8178 -5.3730 10 7 6.2966 3.1462 -5.6729 11 6 6.3933 3.8372 -6.8530 12 1 5.5506 4.4069 -7.2159 13 6 7.5757 3.8047 -7.5822 14 7 7.6686 4.4675 -8.7130 15 14 9.0332 2.8189 -6.9548 16 1 8.9589 1.4339 -7.4851 17 1 10.2947 3.4563 -7.4101 18 1 9.0043 2.7829 -5.4705 19 6 2.3382 1.9829 1.1628 20 8 2.6468 3.1583 1.1740 21 6 2.3135 1.2122 2.4261 22 6 3.0479 0.0292 2.5615 23 6 2.9911 -0.6617 3.7551 24 7 2.2636 -0.2189 4.7617 25 6 1.5609 0.8923 4.6818 26 6 1.5582 1.6492 3.5215 27 9 0.8348 2.7877 3.4461 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.4183 1.7455 -1.9764 34 1 2.0047 3.1732 -1.0898 35 1 4.3040 2.2452 -1.1163 36 1 3.7176 0.8175 -2.0029 37 1 3.5019 3.5920 -2.9741 38 1 5.7939 2.7845 -2.9694 39 1 5.2082 1.3562 -3.8555 40 1 7.0534 2.6343 -5.3471 41 1 8.4942 4.4451 -9.2219 42 1 3.6468 -0.3406 1.7423 43 1 3.5512 -1.5785 3.8663 44 1 0.9793 1.2176 5.5318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268443009.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:45 Heat of formation + Delta-G solvation = -88.851289 kcal Electronic energy + Delta-G solvation = -28350.983667 eV Core-core repulsion = 24024.479358 eV Total energy + Delta-G solvation = -4326.504310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.20113 -41.84392 -40.48136 -40.26482 -37.78519 -36.63340 -35.87882 -33.97736 -33.75183 -32.14524 -32.03219 -30.32666 -28.01285 -26.28967 -25.36165 -24.62431 -24.26498 -23.23571 -21.36371 -20.88688 -20.24613 -18.90556 -18.62702 -18.45529 -17.90288 -17.78980 -17.18852 -16.90004 -16.79158 -16.57567 -16.00397 -15.59883 -15.45501 -15.40615 -15.14930 -14.97652 -14.82500 -14.67721 -14.57489 -14.47065 -14.26315 -13.88929 -13.72026 -13.45081 -13.18045 -13.00606 -12.83953 -12.77497 -12.42131 -12.16974 -12.13667 -11.98571 -11.61695 -11.52207 -11.02528 -10.67602 -10.49718 -10.26219 -10.13197 -9.93924 -9.45353 -8.42040 -6.03367 -0.49371 -0.23222 1.27900 1.29978 1.35564 1.44626 1.61784 1.93467 2.22751 2.45898 2.71780 2.79475 3.03075 3.13843 3.38439 3.43602 3.54918 3.67457 3.90218 3.98677 4.03156 4.13482 4.25183 4.28159 4.40105 4.41581 4.46263 4.51024 4.54137 4.62589 4.73903 4.74800 4.76841 4.87803 4.91356 5.26804 5.33269 5.41447 5.51319 5.84851 5.97966 6.08842 6.22791 6.58114 6.65153 6.78443 6.86614 7.37927 7.94413 8.75556 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021096 B = 0.001952 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.960215 B =14342.995178 C =14717.175574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.087 3.913 3 N -0.590 5.590 4 C 0.119 3.881 5 C 0.057 3.943 6 N -0.681 5.681 7 C 0.064 3.936 8 C 0.447 3.553 9 O -0.615 6.615 10 N -0.589 5.589 11 C -0.330 4.330 12 H 0.054 0.946 13 C -0.017 4.017 14 N -0.934 5.934 15 Si 0.967 3.033 16 H -0.254 1.254 17 H -0.276 1.276 18 H -0.232 1.232 19 C 0.555 3.445 20 O -0.567 6.567 21 C -0.126 4.126 22 C -0.105 4.105 23 C 0.101 3.899 24 N -0.460 5.460 25 C 0.083 3.917 26 C 0.064 3.936 27 F -0.136 7.136 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.038 0.962 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.061 0.939 35 H 0.025 0.975 36 H 0.100 0.900 37 H 0.342 0.658 38 H 0.072 0.928 39 H 0.123 0.877 40 H 0.390 0.610 41 H 0.279 0.721 42 H 0.182 0.818 43 H 0.210 0.790 44 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.807 -20.294 29.693 37.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.033 4.033 3 N -0.321 5.321 4 C -0.004 4.004 5 C -0.073 4.073 6 N -0.313 5.313 7 C -0.068 4.068 8 C 0.235 3.765 9 O -0.499 6.499 10 N -0.231 5.231 11 C -0.459 4.459 12 H 0.073 0.927 13 C -0.215 4.215 14 N -0.574 5.574 15 Si 0.787 3.213 16 H -0.178 1.178 17 H -0.201 1.201 18 H -0.155 1.155 19 C 0.343 3.657 20 O -0.446 6.446 21 C -0.138 4.138 22 C -0.125 4.125 23 C -0.055 4.055 24 N -0.168 5.168 25 C -0.075 4.075 26 C 0.041 3.959 27 F -0.114 7.114 28 H 0.074 0.926 29 H 0.111 0.889 30 H 0.057 0.943 31 H 0.128 0.872 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.079 0.921 35 H 0.043 0.957 36 H 0.119 0.881 37 H 0.160 0.840 38 H 0.090 0.910 39 H 0.141 0.859 40 H 0.226 0.774 41 H 0.089 0.911 42 H 0.199 0.801 43 H 0.227 0.773 44 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -9.515 -20.132 29.608 37.047 hybrid contribution 1.031 1.826 -0.711 2.214 sum -8.484 -18.307 28.898 35.245 Atomic orbital electron populations 1.22171 0.95377 1.03664 1.01567 1.22208 0.95083 0.80023 1.06029 1.47916 1.63386 1.15957 1.04869 1.21342 0.97693 0.97323 0.84034 1.22259 0.96130 1.00396 0.88546 1.60035 1.27168 1.17263 1.26832 1.21626 0.91260 1.01879 0.92054 1.20969 0.82598 0.84960 0.87983 1.90551 1.39385 1.47367 1.72623 1.42013 1.13801 1.46402 1.20899 1.19008 1.00694 1.27886 0.98347 0.92745 1.26161 1.01378 0.98500 0.95502 1.69808 1.29163 1.42897 1.15571 0.85337 0.76768 0.78810 0.80416 1.17830 1.20102 1.15517 1.18475 0.76931 0.86047 0.84288 1.90838 1.49368 1.17353 1.87013 1.20514 1.01219 0.98296 0.93747 1.22605 0.97304 0.91149 1.01448 1.23507 0.94687 1.00429 0.86883 1.67720 1.05602 1.11950 1.31522 1.23235 0.97989 0.90491 0.95784 1.19162 0.95153 0.85226 0.96340 1.91541 1.75241 1.47940 1.96697 0.92641 0.88887 0.94256 0.87173 0.87787 0.87703 0.92078 0.95661 0.88136 0.83972 0.91044 0.85923 0.77393 0.91113 0.80086 0.77327 0.79048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 10.24 71.98 0.74 -0.85 16 2 C 0.09 0.72 5.99 86.38 0.52 1.24 16 3 N -0.59 -9.76 2.47 -825.06 -2.04 -11.80 16 4 C 0.12 2.40 5.73 86.38 0.50 2.89 16 5 C 0.06 1.16 6.01 86.30 0.52 1.68 16 6 N -0.68 -19.80 6.13 -517.94 -3.17 -22.98 16 7 C 0.06 1.93 6.17 85.56 0.53 2.45 16 8 C 0.45 20.22 7.82 87.66 0.69 20.91 16 9 O -0.61 -34.42 15.78 -3.09 -0.05 -34.47 16 10 N -0.59 -27.78 5.09 -306.98 -1.56 -29.35 16 11 C -0.33 -19.45 10.16 84.04 0.85 -18.59 16 12 H 0.05 3.83 7.39 -2.91 -0.02 3.81 16 13 C -0.02 -0.93 5.50 84.93 0.47 -0.47 16 14 N -0.93 -56.48 13.96 21.66 0.30 -56.18 16 15 Si 0.97 38.51 27.74 68.60 1.90 40.41 16 16 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 17 H -0.28 -10.95 7.11 99.48 0.71 -10.25 16 18 H -0.23 -7.75 6.52 99.48 0.65 -7.10 16 19 C 0.56 12.28 6.95 86.83 0.60 12.89 16 20 O -0.57 -18.34 16.53 -3.79 -0.06 -18.41 16 21 C -0.13 -2.03 4.93 -19.85 -0.10 -2.12 16 22 C -0.11 -0.79 7.62 22.63 0.17 -0.62 16 23 C 0.10 0.61 11.17 84.64 0.95 1.55 16 24 N -0.46 -5.13 10.33 -195.82 -2.02 -7.16 16 25 C 0.08 1.03 11.17 84.78 0.95 1.98 16 26 C 0.06 1.11 7.33 22.78 0.17 1.27 16 27 F -0.14 -3.10 16.82 44.97 0.76 -2.35 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.11 0.52 8.11 -2.39 -0.02 0.50 16 32 H 0.10 0.47 4.44 -2.39 -0.01 0.46 16 33 H 0.10 1.88 8.07 -2.39 -0.02 1.86 16 34 H 0.06 1.59 7.35 -2.39 -0.02 1.57 16 35 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 36 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.34 11.29 8.43 -89.69 -0.76 10.53 16 38 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 40 H 0.39 15.06 5.76 -92.71 -0.53 14.53 16 41 H 0.28 15.40 8.31 -92.70 -0.77 14.63 16 42 H 0.18 0.30 7.61 -2.91 -0.02 0.28 16 43 H 0.21 -0.37 8.06 -2.91 -0.02 -0.40 16 44 H 0.19 1.45 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -87.95 380.92 1.30 -86.65 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: -0.29 Total: 31.41 kcal Atomic # 6 Polarization: 16.67 SS G_CDS: 7.54 Total: 24.21 kcal Atomic # 7 Polarization: -118.96 SS G_CDS: -8.50 Total: -127.46 kcal Atomic # 8 Polarization: -52.77 SS G_CDS: -0.11 Total: -52.88 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.76 Total: -2.35 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 1.90 Total: 40.41 kcal Total: -87.95 1.30 -86.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268443009.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.202 kcal (2) G-P(sol) polarization free energy of solvation -87.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds