Wall clock time and date at job start Tue Mar 31 2020 21:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46505 * 109.46899 * 2 1 4 4 C 1.46493 * 119.99703 * 262.91421 * 3 2 1 5 5 C 1.53003 * 109.47245 * 269.99545 * 4 3 2 6 6 N 1.46896 * 109.47093 * 180.02562 * 5 4 3 7 7 C 1.46909 * 110.99921 * 180.02562 * 6 5 4 8 8 C 1.50692 * 109.47155 * 180.02562 * 7 6 5 9 9 O 1.21294 * 120.00323 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99924 * 180.02562 * 8 7 6 11 11 C 1.37094 * 119.99903 * 180.02562 * 10 8 7 12 12 H 1.07999 * 120.00572 * 359.97438 * 11 10 8 13 13 C 1.38957 * 119.99847 * 179.97438 * 11 10 8 14 14 N 1.31407 * 120.00052 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99822 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47287 * 60.00216 * 15 13 11 17 17 H 1.48503 * 109.47012 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47519 * 300.00406 * 15 13 11 19 19 C 1.34779 * 119.99750 * 82.91106 * 3 2 1 20 20 O 1.21529 * 119.99591 * 183.69629 * 19 3 2 21 21 C 1.47996 * 120.00264 * 3.69904 * 19 3 2 22 22 N 1.32809 * 119.75203 * 353.92881 * 21 19 3 23 23 C 1.31433 * 121.66948 * 179.97438 * 22 21 19 24 24 C 1.38680 * 120.97838 * 359.97438 * 23 22 21 25 25 C 1.38450 * 119.39351 * 0.26266 * 24 23 22 26 26 C 1.38969 * 118.46885 * 359.50109 * 25 24 23 27 27 F 1.35098 * 120.50341 * 180.24578 * 26 25 24 28 28 H 1.09006 * 109.46436 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.46981 * 299.99549 * 1 2 3 30 30 H 1.08996 * 109.46871 * 59.99982 * 1 2 3 31 31 H 1.08993 * 109.46981 * 240.00451 * 2 1 3 32 32 H 1.08996 * 109.46871 * 120.00018 * 2 1 3 33 33 H 1.08998 * 109.47719 * 30.00375 * 4 3 2 34 34 H 1.09006 * 109.47141 * 149.99944 * 4 3 2 35 35 H 1.08995 * 109.46936 * 300.00926 * 5 4 3 36 36 H 1.08997 * 109.46398 * 60.00609 * 5 4 3 37 37 H 1.00903 * 111.00116 * 56.05321 * 6 5 4 38 38 H 1.09003 * 109.46620 * 300.00535 * 7 6 5 39 39 H 1.08994 * 109.46925 * 59.99859 * 7 6 5 40 40 H 0.96997 * 120.00006 * 359.97438 * 10 8 7 41 41 H 0.96995 * 120.00414 * 179.97438 * 14 13 11 42 42 H 1.08000 * 119.50800 * 180.02562 * 23 22 21 43 43 H 1.07995 * 120.30358 * 179.97438 * 24 23 22 44 44 H 1.08003 * 120.76433 * 179.72354 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.4100 2.0196 -1.2590 5 6 3.8961 1.7649 -1.5194 6 7 4.2889 2.4055 -2.7815 7 6 5.7128 2.1809 -3.0651 8 6 6.0782 2.8517 -4.3640 9 8 5.2354 3.4570 -4.9922 10 7 7.3413 2.7783 -4.8284 11 6 7.6739 3.3890 -6.0099 12 1 6.9237 3.9286 -6.5688 13 6 8.9763 3.3137 -6.4884 14 7 9.8893 2.6576 -5.8081 15 14 9.4293 4.1452 -8.0986 16 1 9.1697 5.6036 -7.9928 17 1 10.8687 3.9187 -8.3848 18 1 8.6097 3.5752 -9.1978 19 6 2.1071 2.0646 1.1583 20 8 2.4480 3.2311 1.1510 21 6 1.7897 1.3944 2.4391 22 7 1.3025 0.1589 2.4334 23 6 1.0080 -0.4718 3.5483 24 6 1.1967 0.1331 4.7819 25 6 1.6977 1.4225 4.8369 26 6 2.0057 2.0650 3.6437 27 9 2.5017 3.3216 3.6497 28 1 -0.3632 -1.0278 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8213 1.6031 -2.0763 34 1 2.2315 3.0930 -1.1931 35 1 4.4847 2.1815 -0.7021 36 1 4.0745 0.6916 -1.5853 37 1 4.0735 3.3912 -2.7691 38 1 6.3143 2.5998 -2.2583 39 1 5.9034 1.1105 -3.1423 40 1 8.0152 2.2940 -4.3263 41 1 10.7983 2.6047 -6.1423 42 1 0.6140 -1.4764 3.5030 43 1 0.9506 -0.3952 5.6911 44 1 1.8492 1.9163 5.7854 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268486848.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:36 Heat of formation + Delta-G solvation = -51.220828 kcal Electronic energy + Delta-G solvation = -28384.569536 eV Core-core repulsion = 24059.697005 eV Total energy + Delta-G solvation = -4324.872530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.33673 -41.15662 -39.45914 -38.22882 -36.60511 -35.28088 -33.82323 -33.20278 -31.67571 -31.24947 -31.00892 -28.98475 -26.35300 -25.15390 -24.20991 -23.73638 -23.44127 -22.18777 -20.16679 -19.17021 -18.20844 -17.93356 -17.79074 -17.53179 -16.54518 -16.33031 -16.17116 -15.93526 -15.44356 -15.18813 -14.69371 -14.57989 -14.44064 -14.18658 -14.01549 -13.83285 -13.74364 -13.33429 -13.26435 -13.17119 -12.99446 -12.64970 -12.28255 -12.06656 -11.93262 -11.48048 -11.45129 -11.39318 -11.05992 -10.92017 -10.54757 -10.46331 -10.41009 -10.17621 -9.70347 -9.58444 -9.46051 -8.85447 -8.40723 -8.03178 -7.91870 -6.37649 -3.78356 -0.03829 0.40255 2.31866 2.56870 3.19165 3.23495 3.28597 3.33407 3.41737 3.59707 3.95510 4.02151 4.03974 4.18008 4.22006 4.48672 4.61763 4.90163 4.96253 5.04238 5.11283 5.14925 5.23453 5.26882 5.27699 5.32002 5.37940 5.55380 5.62057 5.73936 5.80622 5.90293 5.91462 5.97461 6.03828 6.18636 6.29360 6.39887 6.96770 7.14572 7.22667 7.58949 7.68712 7.86156 8.10285 8.65674 9.21800 9.58570 10.10279 10.80129 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023156 B = 0.001870 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.883302 B =14972.477245 C =15417.872365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.095 3.905 3 N -0.587 5.587 4 C 0.115 3.885 5 C 0.047 3.953 6 N -0.666 5.666 7 C 0.052 3.948 8 C 0.442 3.558 9 O -0.583 6.583 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.021 3.979 14 N -0.903 5.903 15 Si 0.932 3.068 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.273 1.273 19 C 0.563 3.437 20 O -0.519 6.519 21 C 0.047 3.953 22 N -0.418 5.418 23 C 0.079 3.921 24 C -0.119 4.119 25 C -0.119 4.119 26 C 0.112 3.888 27 F -0.104 7.104 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.030 0.970 36 H 0.072 0.928 37 H 0.351 0.649 38 H 0.044 0.956 39 H 0.086 0.914 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.172 0.828 43 H 0.151 0.849 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.542 -11.165 25.133 33.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.028 4.028 3 N -0.319 5.319 4 C -0.007 4.007 5 C -0.084 4.084 6 N -0.299 5.299 7 C -0.080 4.080 8 C 0.227 3.773 9 O -0.467 6.467 10 N -0.201 5.201 11 C -0.429 4.429 12 H 0.120 0.880 13 C -0.180 4.180 14 N -0.544 5.544 15 Si 0.759 3.241 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 C 0.349 3.651 20 O -0.394 6.394 21 C -0.091 4.091 22 N -0.130 5.130 23 C -0.081 4.081 24 C -0.139 4.139 25 C -0.145 4.145 26 C 0.089 3.911 27 F -0.082 7.082 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.133 0.867 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.048 0.952 36 H 0.090 0.910 37 H 0.171 0.829 38 H 0.062 0.938 39 H 0.104 0.896 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.189 0.811 43 H 0.168 0.832 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -19.019 -11.008 23.410 32.108 hybrid contribution 1.386 1.119 1.082 2.084 sum -17.633 -9.889 24.492 31.758 Atomic orbital electron populations 1.22021 0.95788 1.01871 1.01494 1.22210 0.94851 0.81317 1.04395 1.47807 1.62942 1.14982 1.06195 1.21504 0.95344 0.99655 0.84235 1.22254 0.95168 1.00098 0.90888 1.60014 1.17952 1.20044 1.31902 1.21654 0.88474 1.01322 0.96578 1.19796 0.83546 0.86029 0.87923 1.90521 1.49035 1.46874 1.60241 1.41851 1.08423 1.47994 1.21808 1.19662 0.95243 1.29721 0.98233 0.87954 1.25268 0.95453 0.97588 0.99711 1.69604 1.03392 1.42001 1.39410 0.85905 0.77166 0.79608 0.81454 1.19925 1.21012 1.19888 1.17729 0.78617 0.85812 0.82937 1.90881 1.47008 1.15268 1.86231 1.21449 1.02120 0.92186 0.93359 1.68263 1.08475 1.06124 1.30103 1.23100 0.96834 1.00754 0.87386 1.22325 0.96860 0.94289 1.00415 1.21765 0.99129 0.95822 0.97812 1.18666 0.96763 0.81540 0.94103 1.91650 1.83703 1.35746 1.97076 0.91734 0.92690 0.93138 0.90859 0.86662 0.88955 0.89573 0.95224 0.90989 0.82946 0.93832 0.89604 0.77456 0.91854 0.81088 0.83166 0.82732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.60 37.16 0.36 -0.81 16 2 C 0.09 0.81 5.70 -4.04 -0.02 0.79 16 3 N -0.59 -6.74 2.49 -174.74 -0.44 -7.18 16 4 C 0.12 1.45 5.66 -4.04 -0.02 1.42 16 5 C 0.05 0.65 6.01 -3.82 -0.02 0.63 16 6 N -0.67 -11.55 6.13 -115.06 -0.70 -12.25 16 7 C 0.05 0.99 6.17 -4.97 -0.03 0.96 16 8 C 0.44 10.86 7.82 -10.99 -0.09 10.77 16 9 O -0.58 -16.34 15.78 5.55 0.09 -16.26 16 10 N -0.56 -14.77 5.29 -10.96 -0.06 -14.83 16 11 C -0.30 -8.55 9.68 -14.93 -0.14 -8.70 16 12 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 13 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -25.06 13.05 55.50 0.72 -24.33 16 15 Si 0.93 21.50 29.55 -169.99 -5.02 16.47 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 C 0.56 7.46 7.59 -12.26 -0.09 7.37 16 20 O -0.52 -8.71 14.90 5.34 0.08 -8.63 16 21 C 0.05 0.49 6.53 -82.96 -0.54 -0.05 16 22 N -0.42 -3.15 4.41 -9.76 -0.04 -3.19 16 23 C 0.08 0.34 11.18 -17.56 -0.20 0.14 16 24 C -0.12 -0.40 10.11 -39.34 -0.40 -0.79 16 25 C -0.12 -0.66 10.16 -39.23 -0.40 -1.05 16 26 C 0.11 1.08 7.31 -38.82 -0.28 0.80 16 27 F -0.10 -1.29 15.57 2.25 0.04 -1.25 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.47 6.84 -51.93 -0.36 0.11 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.58 8.02 -51.93 -0.42 0.17 16 32 H 0.12 0.93 5.16 -53.35 -0.28 0.65 16 33 H 0.09 1.07 8.07 -51.93 -0.42 0.65 16 34 H 0.09 1.21 7.37 -51.93 -0.38 0.82 16 35 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.35 6.37 8.43 -39.29 -0.33 6.04 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.39 9.81 7.90 -40.82 -0.32 9.48 16 41 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.17 0.17 8.06 -52.49 -0.42 -0.26 16 43 H 0.15 0.00 8.06 -52.49 -0.42 -0.42 16 44 H 0.15 0.48 8.06 -52.48 -0.42 0.06 16 LS Contribution 377.79 15.07 5.69 5.69 Total: -1.00 -35.40 377.79 -7.44 -42.85 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -5.82 Total: 10.95 kcal Atomic # 6 Polarization: 13.93 SS G_CDS: -1.98 Total: 11.95 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: -0.52 Total: -61.78 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: 0.17 Total: -24.89 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.40 -7.44 -42.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268486848.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.374 kcal (2) G-P(sol) polarization free energy of solvation -35.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds