Wall clock time and date at job start Tue Mar 31 2020 20:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94128 * 179.74228 * 4 3 2 6 6 C 1.38283 * 120.05595 * 0.50772 * 5 4 3 7 7 C 1.38246 * 120.11013 * 359.76602 * 6 5 4 8 8 C 1.50703 * 119.97077 * 179.97438 * 7 6 5 9 9 N 1.46900 * 109.47187 * 270.02181 * 8 7 6 10 10 C 1.46894 * 111.00123 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.47173 * 179.97438 * 10 9 8 12 12 H 1.08998 * 109.47149 * 65.00434 * 11 10 9 13 13 C 1.53006 * 109.47290 * 185.00129 * 11 10 9 14 14 N 1.46497 * 109.47304 * 305.00170 * 11 10 9 15 15 C 1.34776 * 120.00061 * 154.99868 * 14 11 10 16 16 O 1.21274 * 120.00100 * 0.02562 * 15 14 11 17 17 C 1.50703 * 119.99902 * 179.97438 * 15 14 11 18 18 S 1.80998 * 109.47173 * 180.02562 * 17 15 14 19 19 C 1.76194 * 100.00020 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00241 * 0.02562 * 19 18 17 21 21 C 1.38804 * 120.00130 * 179.97438 * 19 18 17 22 22 N 1.31627 * 119.99618 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00238 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47518 * 89.99985 * 23 21 19 25 25 H 1.48506 * 109.47345 * 210.00392 * 23 21 19 26 26 H 1.48501 * 109.47238 * 330.00000 * 23 21 19 27 27 C 1.38159 * 120.05555 * 359.97438 * 7 6 5 28 28 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 30 30 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 31 31 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 32 32 H 1.08007 * 119.97088 * 180.24901 * 5 4 3 33 33 H 1.08001 * 119.94728 * 179.74503 * 6 5 4 34 34 H 1.09002 * 109.47303 * 30.02167 * 8 7 6 35 35 H 1.09000 * 109.47206 * 150.02292 * 8 7 6 36 36 H 1.00899 * 110.99679 * 303.95904 * 9 8 7 37 37 H 1.09001 * 109.47596 * 300.00200 * 10 9 8 38 38 H 1.09005 * 109.47232 * 60.00216 * 10 9 8 39 39 H 1.09003 * 109.46679 * 59.99589 * 13 11 10 40 40 H 1.08998 * 109.47214 * 180.02562 * 13 11 10 41 41 H 1.08995 * 109.46653 * 300.00170 * 13 11 10 42 42 H 0.97010 * 119.99887 * 334.99926 * 14 11 10 43 43 H 1.09000 * 109.47589 * 300.00263 * 17 15 14 44 44 H 1.08999 * 109.47174 * 60.00217 * 17 15 14 45 45 H 0.97000 * 119.99897 * 180.02562 * 22 21 19 46 46 H 1.08006 * 120.02917 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9208 3.6048 -0.0003 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 0.0000 9 7 6.0496 2.6252 -1.3850 10 6 7.5158 2.7048 -1.4243 11 6 7.9864 2.7301 -2.8799 12 1 7.6351 3.6437 -3.3595 13 6 9.5153 2.6872 -2.9226 14 7 7.4454 1.5676 -3.5884 15 6 7.2805 1.6098 -4.9253 16 8 7.5804 2.6100 -5.5420 17 6 6.7244 0.4136 -5.6541 18 16 6.6250 0.7782 -7.4242 19 6 5.9621 -0.7443 -8.0134 20 1 5.7487 -1.5446 -7.3203 21 6 5.7131 -0.9148 -9.3682 22 7 5.9728 0.0607 -10.2129 23 14 5.0111 -2.5291 -9.9930 24 1 3.5277 -2.4609 -9.9826 25 1 5.4858 -2.7721 -11.3790 26 1 5.4617 -3.6381 -9.1140 27 6 3.4311 1.2849 0.0001 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2128 2.3203 -0.0106 32 1 1.3339 4.5114 -0.0006 33 1 3.7922 4.6381 0.0002 34 1 5.8757 3.5063 0.5142 35 1 5.9715 1.7289 0.5134 36 1 5.7165 1.8250 -1.9016 37 1 7.8441 3.6138 -0.9202 38 1 7.9405 1.8364 -0.9206 39 1 9.8666 1.7736 -2.4429 40 1 9.8505 2.7057 -3.9596 41 1 9.9177 3.5522 -2.3955 42 1 7.2058 0.7673 -3.0951 43 1 7.3782 -0.4442 -5.4964 44 1 5.7288 0.1865 -5.2731 45 1 5.7985 -0.0582 -11.1597 46 1 4.0206 0.3800 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268638038.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:54 Heat of formation + Delta-G solvation = -53.370536 kcal Electronic energy + Delta-G solvation = -25836.766905 eV Core-core repulsion = 22045.721582 eV Total energy + Delta-G solvation = -3791.045324 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.41525 -39.43285 -38.13863 -36.74957 -34.47283 -32.40078 -31.88013 -31.03443 -30.42226 -28.49553 -27.66101 -26.57616 -25.45216 -24.01757 -22.75048 -21.63621 -21.14753 -20.23717 -18.20981 -17.78680 -16.70081 -16.45938 -16.24013 -16.15449 -16.02241 -15.48772 -15.28574 -14.78177 -14.71422 -14.63235 -14.10385 -13.88962 -13.66064 -13.24670 -13.19270 -12.93142 -12.74460 -12.54603 -12.46498 -12.28814 -12.14785 -11.93529 -11.78429 -11.53215 -11.31702 -11.15910 -11.04029 -10.99533 -10.89771 -10.72978 -9.78308 -9.31762 -9.19772 -9.04218 -8.87096 -8.65580 -8.43930 -8.19508 -6.45990 -6.18806 -3.88702 1.01147 1.22102 2.97324 3.07534 3.16977 3.24276 3.29829 3.34194 3.42724 3.75654 4.05130 4.23348 4.45801 4.50517 4.66976 4.77193 4.79472 4.83852 4.92096 5.03003 5.10419 5.15853 5.16268 5.17735 5.21542 5.25587 5.33447 5.42607 5.45019 5.45303 5.62921 5.71457 5.75922 5.93599 6.02260 6.10104 6.17048 6.17889 6.19809 6.34917 6.47074 6.67373 6.74108 7.07897 7.12324 7.62419 7.75092 8.38133 8.68901 9.26525 10.88643 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008126 B = 0.002756 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3445.085773 B =10158.957395 C =12875.567632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.126 3.874 4 C -0.207 4.207 5 C -0.081 4.081 6 C -0.133 4.133 7 C -0.046 4.046 8 C 0.099 3.901 9 N -0.682 5.682 10 C 0.053 3.947 11 C 0.145 3.855 12 H 0.096 0.904 13 C -0.163 4.163 14 N -0.734 5.734 15 C 0.536 3.464 16 O -0.515 6.515 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C -0.146 4.146 28 H 0.100 0.900 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.084 0.916 35 H 0.040 0.960 36 H 0.347 0.653 37 H 0.086 0.914 38 H 0.035 0.965 39 H 0.054 0.946 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.392 0.608 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.241 3.770 27.244 27.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.081 3.919 4 C -0.226 4.226 5 C -0.100 4.100 6 C -0.152 4.152 7 C -0.046 4.046 8 C -0.029 4.029 9 N -0.315 5.315 10 C -0.076 4.076 11 C 0.040 3.960 12 H 0.114 0.886 13 C -0.222 4.222 14 N -0.389 5.389 15 C 0.322 3.678 16 O -0.389 6.389 17 C -0.305 4.305 18 S 0.167 5.833 19 C -0.683 4.683 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 C -0.165 4.165 28 H 0.118 0.882 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.102 0.898 35 H 0.058 0.942 36 H 0.166 0.834 37 H 0.105 0.895 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.226 0.774 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.727 5.999 25.949 27.049 hybrid contribution -1.048 -3.391 0.774 3.632 sum -5.775 2.609 26.723 27.464 Atomic orbital electron populations 1.23059 0.78304 1.04031 1.01350 1.86078 1.21460 1.26910 1.88704 1.18972 0.92260 0.84230 0.96435 1.21250 1.00034 0.92483 1.08862 1.20952 0.94676 0.96985 0.97340 1.20941 0.93504 0.98157 1.02564 1.19523 0.95118 0.92254 0.97715 1.20886 0.90209 1.01561 0.90281 1.60405 1.09247 1.49490 1.12320 1.22300 0.87577 1.01595 0.96155 1.20927 0.93192 0.90961 0.90961 0.88572 1.22164 0.95146 1.01619 1.03255 1.46050 1.67842 1.17283 1.07725 1.20238 0.77077 0.89109 0.81407 1.90695 1.48809 1.33072 1.66312 1.23538 1.03333 0.98567 1.05037 1.85387 1.84038 1.22151 0.91686 1.22873 1.49280 1.00688 0.95488 0.90985 1.24986 0.95256 0.97639 0.95706 1.70019 1.45311 1.31673 1.03307 0.86179 0.79150 0.82133 0.78101 1.20281 1.20771 1.19711 1.20287 0.91473 0.98101 1.06639 0.88193 0.92752 0.92475 0.85577 0.85712 0.85665 0.89780 0.94162 0.83366 0.89520 0.94691 0.92720 0.91366 0.91823 0.77439 0.89394 0.89302 0.92218 0.85483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.33 10.50 -19.44 -0.20 -3.54 16 3 C 0.13 1.35 6.69 -39.22 -0.26 1.08 16 4 C -0.21 -1.94 9.04 -39.43 -0.36 -2.30 16 5 C -0.08 -0.73 10.04 -39.60 -0.40 -1.13 16 6 C -0.13 -1.25 9.70 -39.56 -0.38 -1.63 16 7 C -0.05 -0.44 5.39 -104.65 -0.56 -1.00 16 8 C 0.10 0.80 5.81 -4.97 -0.03 0.78 16 9 N -0.68 -6.58 6.48 -115.06 -0.75 -7.33 16 10 C 0.05 0.46 5.30 -3.83 -0.02 0.44 16 11 C 0.14 1.68 2.88 -67.93 -0.20 1.48 16 12 H 0.10 1.38 7.58 -51.93 -0.39 0.99 16 13 C -0.16 -1.74 9.48 37.16 0.35 -1.39 16 14 N -0.73 -9.69 4.35 -53.81 -0.23 -9.93 16 15 C 0.54 10.03 7.81 -10.98 -0.09 9.94 16 16 O -0.52 -11.76 15.52 5.56 0.09 -11.67 16 17 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 18 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 19 C -0.54 -15.42 9.50 30.94 0.29 -15.13 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.43 13.22 55.49 0.73 -25.69 16 23 Si 0.92 21.63 29.55 -169.99 -5.02 16.60 16 24 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 27 C -0.15 -1.50 9.64 -39.44 -0.38 -1.88 16 28 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.29 7.67 -51.93 -0.40 -0.11 16 30 H 0.06 0.35 7.65 -51.93 -0.40 -0.04 16 31 H 0.13 0.92 6.30 -52.49 -0.33 0.59 16 32 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 33 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 35 H 0.04 0.29 8.08 -51.93 -0.42 -0.13 16 36 H 0.35 3.59 7.57 -39.29 -0.30 3.30 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.39 4.10 8.16 -40.82 -0.33 3.77 16 43 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 44 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 45 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 46 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 400.79 15.07 6.04 6.04 Total: -1.00 -35.63 400.79 -9.66 -45.28 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -7.18 Total: 4.54 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -0.91 Total: -10.47 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: -0.25 Total: -42.95 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.12 Total: -15.21 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.63 -9.66 -45.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268638038.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.086 kcal (2) G-P(sol) polarization free energy of solvation -35.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds