Wall clock time and date at job start Tue Mar 31 2020 20:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94128 * 179.74228 * 4 3 2 6 6 C 1.38283 * 120.05595 * 0.50772 * 5 4 3 7 7 C 1.38246 * 120.11013 * 359.76602 * 6 5 4 8 8 C 1.50703 * 119.97077 * 179.97438 * 7 6 5 9 9 N 1.46900 * 109.47187 * 270.02181 * 8 7 6 10 10 C 1.46894 * 111.00123 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.47173 * 179.97438 * 10 9 8 12 12 H 1.08998 * 109.47149 * 65.00434 * 11 10 9 13 13 C 1.53006 * 109.47290 * 185.00129 * 11 10 9 14 14 N 1.46497 * 109.47304 * 305.00170 * 11 10 9 15 15 C 1.34776 * 120.00061 * 154.99868 * 14 11 10 16 16 O 1.21274 * 120.00100 * 0.02562 * 15 14 11 17 17 C 1.50703 * 119.99902 * 179.97438 * 15 14 11 18 18 S 1.80998 * 109.47173 * 180.02562 * 17 15 14 19 19 C 1.76194 * 100.00020 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00241 * 0.02562 * 19 18 17 21 21 C 1.38804 * 120.00130 * 179.97438 * 19 18 17 22 22 N 1.31627 * 119.99618 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00238 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47518 * 89.99985 * 23 21 19 25 25 H 1.48506 * 109.47345 * 210.00392 * 23 21 19 26 26 H 1.48501 * 109.47238 * 330.00000 * 23 21 19 27 27 C 1.38159 * 120.05555 * 359.97438 * 7 6 5 28 28 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 30 30 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 31 31 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 32 32 H 1.08007 * 119.97088 * 180.24901 * 5 4 3 33 33 H 1.08001 * 119.94728 * 179.74503 * 6 5 4 34 34 H 1.09002 * 109.47303 * 30.02167 * 8 7 6 35 35 H 1.09000 * 109.47206 * 150.02292 * 8 7 6 36 36 H 1.00899 * 110.99679 * 303.95904 * 9 8 7 37 37 H 1.09001 * 109.47596 * 300.00200 * 10 9 8 38 38 H 1.09005 * 109.47232 * 60.00216 * 10 9 8 39 39 H 1.09003 * 109.46679 * 59.99589 * 13 11 10 40 40 H 1.08998 * 109.47214 * 180.02562 * 13 11 10 41 41 H 1.08995 * 109.46653 * 300.00170 * 13 11 10 42 42 H 0.97010 * 119.99887 * 334.99926 * 14 11 10 43 43 H 1.09000 * 109.47589 * 300.00263 * 17 15 14 44 44 H 1.08999 * 109.47174 * 60.00217 * 17 15 14 45 45 H 0.97000 * 119.99897 * 180.02562 * 22 21 19 46 46 H 1.08006 * 120.02917 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9208 3.6048 -0.0003 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 0.0000 9 7 6.0496 2.6252 -1.3850 10 6 7.5158 2.7048 -1.4243 11 6 7.9864 2.7301 -2.8799 12 1 7.6351 3.6437 -3.3595 13 6 9.5153 2.6872 -2.9226 14 7 7.4454 1.5676 -3.5884 15 6 7.2805 1.6098 -4.9253 16 8 7.5804 2.6100 -5.5420 17 6 6.7244 0.4136 -5.6541 18 16 6.6250 0.7782 -7.4242 19 6 5.9621 -0.7443 -8.0134 20 1 5.7487 -1.5446 -7.3203 21 6 5.7131 -0.9148 -9.3682 22 7 5.9728 0.0607 -10.2129 23 14 5.0111 -2.5291 -9.9930 24 1 3.5277 -2.4609 -9.9826 25 1 5.4858 -2.7721 -11.3790 26 1 5.4617 -3.6381 -9.1140 27 6 3.4311 1.2849 0.0001 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2128 2.3203 -0.0106 32 1 1.3339 4.5114 -0.0006 33 1 3.7922 4.6381 0.0002 34 1 5.8757 3.5063 0.5142 35 1 5.9715 1.7289 0.5134 36 1 5.7165 1.8250 -1.9016 37 1 7.8441 3.6138 -0.9202 38 1 7.9405 1.8364 -0.9206 39 1 9.8666 1.7736 -2.4429 40 1 9.8505 2.7057 -3.9596 41 1 9.9177 3.5522 -2.3955 42 1 7.2058 0.7673 -3.0951 43 1 7.3782 -0.4442 -5.4964 44 1 5.7288 0.1865 -5.2731 45 1 5.7985 -0.0582 -11.1597 46 1 4.0206 0.3800 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268638038.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:54 Heat of formation + Delta-G solvation = -78.641594 kcal Electronic energy + Delta-G solvation = -25837.862741 eV Core-core repulsion = 22045.721582 eV Total energy + Delta-G solvation = -3792.141159 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.10268 -40.76293 -38.87795 -37.71764 -35.43934 -34.58367 -32.96502 -31.89497 -31.15974 -29.95188 -28.24616 -27.65769 -27.26841 -24.75359 -23.44265 -22.67353 -21.88649 -21.49535 -19.86806 -18.83685 -17.96314 -17.33216 -17.26258 -16.94501 -16.87910 -16.66626 -16.43962 -16.34148 -15.96350 -15.71426 -15.35517 -14.77095 -14.63708 -14.49642 -14.30936 -14.04898 -13.91917 -13.49198 -13.29146 -13.16358 -13.15421 -12.91816 -12.89156 -12.78091 -12.72488 -12.55678 -12.29426 -11.99861 -11.91831 -11.72614 -11.64689 -11.14239 -10.88472 -10.26929 -10.10169 -9.88776 -9.34124 -9.14741 -8.65881 -8.34465 -6.12237 0.31790 0.50489 1.27526 1.42128 1.47205 1.57899 1.66875 2.26492 2.32413 2.36551 2.72391 2.99500 3.29359 3.35878 3.80578 3.84997 3.89018 4.04036 4.14207 4.21379 4.25720 4.29274 4.36214 4.36639 4.40399 4.43547 4.50847 4.55373 4.65229 4.70802 4.73122 4.75685 4.80835 4.81218 5.09675 5.11610 5.29800 5.33465 5.41718 5.48877 5.57335 5.65894 5.81469 6.03366 6.19896 6.33157 6.45362 6.52879 7.06695 7.29920 8.74839 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008126 B = 0.002756 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3445.085773 B =10158.957395 C =12875.567632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.339 6.339 3 C 0.107 3.893 4 C -0.215 4.215 5 C -0.088 4.088 6 C -0.145 4.145 7 C -0.051 4.051 8 C 0.104 3.896 9 N -0.698 5.698 10 C 0.064 3.936 11 C 0.144 3.856 12 H 0.065 0.935 13 C -0.157 4.157 14 N -0.708 5.708 15 C 0.538 3.462 16 O -0.564 6.564 17 C -0.130 4.130 18 S -0.150 6.150 19 C -0.547 4.547 20 H 0.081 0.919 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.268 1.268 25 H -0.277 1.277 26 H -0.258 1.258 27 C -0.162 4.162 28 H 0.115 0.885 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.136 0.864 34 H 0.096 0.904 35 H 0.054 0.946 36 H 0.340 0.660 37 H 0.104 0.896 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.032 0.968 41 H 0.087 0.913 42 H 0.410 0.590 43 H 0.108 0.892 44 H 0.106 0.894 45 H 0.271 0.729 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.636 2.478 29.617 30.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.062 3.938 4 C -0.234 4.234 5 C -0.106 4.106 6 C -0.164 4.164 7 C -0.052 4.052 8 C -0.024 4.024 9 N -0.331 5.331 10 C -0.065 4.065 11 C 0.039 3.961 12 H 0.083 0.917 13 C -0.216 4.216 14 N -0.362 5.362 15 C 0.323 3.677 16 O -0.442 6.442 17 C -0.282 4.282 18 S 0.077 5.923 19 C -0.695 4.695 20 H 0.100 0.900 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.193 1.193 25 H -0.202 1.202 26 H -0.182 1.182 27 C -0.181 4.181 28 H 0.134 0.866 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.161 0.839 32 H 0.163 0.837 33 H 0.154 0.846 34 H 0.114 0.886 35 H 0.072 0.928 36 H 0.159 0.841 37 H 0.122 0.878 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.052 0.948 41 H 0.106 0.894 42 H 0.247 0.753 43 H 0.126 0.874 44 H 0.124 0.876 45 H 0.080 0.920 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.119 4.693 28.395 29.232 hybrid contribution -0.936 -2.934 0.174 3.085 sum -6.056 1.759 28.568 29.256 Atomic orbital electron populations 1.23298 0.76660 1.05393 1.02112 1.86041 1.23321 1.27154 1.88833 1.19246 0.92759 0.84758 0.97054 1.21504 1.01007 0.92297 1.08581 1.21272 0.94932 0.97698 0.96691 1.21204 0.93941 0.98662 1.02573 1.19726 0.96060 0.92027 0.97381 1.20899 0.89206 1.02756 0.89524 1.60403 1.09913 1.49401 1.13334 1.22239 0.87078 1.03542 0.93619 1.21070 0.93894 0.88696 0.92429 0.91655 1.22105 0.94160 1.03764 1.01568 1.45796 1.65977 1.18610 1.05783 1.19963 0.76925 0.87798 0.82985 1.90684 1.51231 1.34503 1.67741 1.23381 1.05017 1.00059 0.99705 1.85562 1.84461 1.23715 0.98556 1.23204 1.49322 1.00723 0.96217 0.90047 1.26129 0.95359 1.01811 0.95850 1.70185 1.46576 1.34266 1.03742 0.84959 0.78457 0.77023 0.77573 1.19314 1.20215 1.18193 1.20480 0.91722 0.98635 1.07285 0.86634 0.91398 0.92255 0.83934 0.83714 0.84629 0.88559 0.92837 0.84101 0.87764 0.92349 0.90810 0.94838 0.89439 0.75344 0.87402 0.87602 0.91990 0.85225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -6.96 10.50 -92.48 -0.97 -7.93 16 3 C 0.11 2.23 6.69 22.50 0.15 2.38 16 4 C -0.22 -3.83 9.04 22.37 0.20 -3.63 16 5 C -0.09 -1.47 10.04 22.25 0.22 -1.24 16 6 C -0.15 -2.54 9.70 22.28 0.22 -2.32 16 7 C -0.05 -0.92 5.39 -19.88 -0.11 -1.02 16 8 C 0.10 1.44 5.81 85.56 0.50 1.94 16 9 N -0.70 -11.94 6.48 -517.93 -3.36 -15.30 16 10 C 0.06 0.90 5.30 86.30 0.46 1.36 16 11 C 0.14 3.12 2.88 44.99 0.13 3.25 16 12 H 0.07 1.88 7.58 -2.39 -0.02 1.86 16 13 C -0.16 -3.09 9.48 71.98 0.68 -2.41 16 14 N -0.71 -17.69 4.35 -442.54 -1.93 -19.62 16 15 C 0.54 20.14 7.81 87.66 0.68 20.83 16 16 O -0.56 -26.62 15.52 -3.01 -0.05 -26.67 16 17 C -0.13 -5.29 6.16 71.24 0.44 -4.85 16 18 S -0.15 -8.50 20.57 -56.49 -1.16 -9.66 16 19 C -0.55 -31.75 9.50 67.96 0.65 -31.11 16 20 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 21 C 0.01 0.76 5.49 84.86 0.47 1.23 16 22 N -0.91 -56.70 13.22 21.65 0.29 -56.42 16 23 Si 1.00 44.15 29.55 68.60 2.03 46.17 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 25 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 26 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 27 C -0.16 -3.23 9.64 22.36 0.22 -3.02 16 28 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 0.63 7.67 -2.39 -0.02 0.61 16 30 H 0.06 0.68 7.65 -2.39 -0.02 0.67 16 31 H 0.14 1.90 6.30 -2.91 -0.02 1.88 16 32 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 33 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 34 H 0.10 1.10 8.09 -2.39 -0.02 1.08 16 35 H 0.05 0.61 8.08 -2.39 -0.02 0.59 16 36 H 0.34 6.42 7.57 -89.69 -0.68 5.74 16 37 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.41 7.52 8.16 -92.70 -0.76 6.77 16 43 H 0.11 3.93 8.14 -2.40 -0.02 3.92 16 44 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 45 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 46 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -80.71 400.79 0.42 -80.29 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: -0.45 Total: 26.39 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: 6.01 Total: -17.26 kcal Atomic # 7 Polarization: -86.34 SS G_CDS: -5.00 Total: -91.34 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -1.02 Total: -34.60 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal Total: -80.71 0.42 -80.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268638038.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.651 kcal (2) G-P(sol) polarization free energy of solvation -80.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds