Wall clock time and date at job start Tue Mar 31 2020 20:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47352 * 2 1 4 4 N 1.46904 * 109.46868 * 119.99739 * 2 1 3 5 5 C 1.46899 * 111.00006 * 275.00098 * 4 2 1 6 6 C 1.50698 * 109.47481 * 179.97438 * 5 4 2 7 7 O 1.21300 * 119.99595 * 0.02562 * 6 5 4 8 8 N 1.34764 * 120.00528 * 179.97438 * 6 5 4 9 9 C 1.37101 * 120.00442 * 180.02562 * 8 6 5 10 10 H 1.08003 * 119.99383 * 0.02562 * 9 8 6 11 11 C 1.38946 * 120.00189 * 180.02562 * 9 8 6 12 12 N 1.31413 * 120.00251 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00019 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46901 * 89.99854 * 13 11 9 15 15 H 1.48497 * 109.47319 * 210.00196 * 13 11 9 16 16 H 1.48496 * 109.47358 * 330.00511 * 13 11 9 17 17 C 1.52995 * 109.47412 * 239.99680 * 2 1 3 18 18 H 1.09002 * 109.47452 * 175.00315 * 17 2 1 19 19 C 1.53008 * 109.47295 * 295.00370 * 17 2 1 20 20 N 1.46505 * 109.47024 * 55.00100 * 17 2 1 21 21 C 1.34777 * 119.99724 * 155.00353 * 20 17 2 22 22 O 1.21553 * 120.00290 * 359.97438 * 21 20 17 23 23 C 1.47849 * 119.99699 * 179.72334 * 21 20 17 24 24 C 1.39561 * 120.54533 * 359.97438 * 23 21 20 25 25 N 1.31662 * 120.61834 * 179.74689 * 24 23 21 26 26 C 1.31941 * 121.90554 * 0.54438 * 25 24 23 27 27 C 1.38527 * 121.04634 * 359.71826 * 26 25 24 28 28 F 1.35103 * 120.37239 * 179.97438 * 27 26 25 29 29 C 1.38616 * 119.25494 * 0.02562 * 27 26 25 30 30 H 1.09002 * 109.47181 * 300.00353 * 1 2 3 31 31 H 1.09007 * 109.47299 * 60.00309 * 1 2 3 32 32 H 1.08998 * 109.47352 * 180.02562 * 1 2 3 33 33 H 1.00902 * 110.99676 * 151.04786 * 4 2 1 34 34 H 1.09008 * 109.47045 * 300.00473 * 5 4 2 35 35 H 1.08997 * 109.47193 * 59.99916 * 5 4 2 36 36 H 0.97000 * 119.99875 * 0.02562 * 8 6 5 37 37 H 0.96998 * 120.00386 * 179.97438 * 12 11 9 38 38 H 1.09002 * 109.46916 * 59.99616 * 19 17 2 39 39 H 1.08991 * 109.47246 * 180.02562 * 19 17 2 40 40 H 1.08998 * 109.46377 * 300.00233 * 19 17 2 41 41 H 0.97000 * 119.99792 * 334.99921 * 20 17 2 42 42 H 1.07990 * 119.68773 * 0.02562 * 24 23 21 43 43 H 1.08004 * 119.47087 * 179.69877 * 26 25 24 44 44 H 1.08000 * 120.86744 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0823 0.2227 2.3469 6 6 2.5871 -0.5216 3.5562 7 8 2.8675 -1.6986 3.4704 8 7 2.7280 0.1206 4.7325 9 6 3.1877 -0.5564 5.8325 10 1 3.4374 -1.6044 5.7561 11 6 3.3324 0.1057 7.0455 12 7 3.0282 1.3807 7.1385 13 14 3.9581 -0.8170 8.5443 14 1 5.4392 -0.7238 8.6002 15 1 3.3777 -0.2174 9.7726 16 1 3.5552 -2.2432 8.4516 17 6 2.0400 -0.7213 -1.2491 18 1 3.1264 -0.6444 -1.2950 19 6 1.6352 -2.1956 -1.1879 20 7 1.4559 -0.1037 -2.4424 21 6 2.0914 -0.1940 -3.6275 22 8 3.1493 -0.7873 -3.7063 23 6 1.4988 0.4240 -4.8329 24 6 0.2819 1.1030 -4.7566 25 7 -0.2446 1.6581 -5.8281 26 6 0.3411 1.5894 -7.0083 27 6 1.5483 0.9292 -7.1695 28 9 2.1358 0.8667 -8.3845 29 6 2.1460 0.3324 -6.0704 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 2.9173 -1.1205 1.0288 34 1 2.7587 1.0463 2.1182 35 1 1.0870 0.6164 2.5525 36 1 2.5041 1.0619 4.8010 37 1 3.1288 1.8428 7.9854 38 1 0.5489 -2.2724 -1.1420 39 1 1.9990 -2.7095 -2.0775 40 1 2.0698 -2.6549 -0.3001 41 1 0.6118 0.3701 -2.3794 42 1 -0.2304 1.1776 -3.8089 43 1 -0.1282 2.0550 -7.8624 44 1 3.0871 -0.1886 -6.1663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282111912.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:42 Heat of formation + Delta-G solvation = -75.295479 kcal Electronic energy + Delta-G solvation = -27969.898519 eV Core-core repulsion = 23643.982034 eV Total energy + Delta-G solvation = -4325.916486 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.57485 -41.18397 -39.74231 -38.47926 -37.40444 -34.67393 -33.85804 -33.21590 -32.10066 -31.25799 -30.59349 -29.20501 -26.63168 -25.72184 -24.55210 -24.25854 -23.44964 -21.29966 -20.00459 -19.39185 -18.88493 -17.99968 -17.90182 -17.57671 -16.88605 -16.46666 -16.26401 -15.96513 -15.64849 -15.24458 -15.16207 -14.52157 -14.47939 -14.38678 -13.97267 -13.94800 -13.82442 -13.73807 -13.25118 -13.00023 -12.88105 -12.59307 -12.27921 -12.11507 -11.86548 -11.64115 -11.48017 -11.14458 -10.99488 -10.87521 -10.78328 -10.57097 -10.40643 -10.23632 -10.10393 -9.72330 -9.52796 -9.44384 -8.50467 -8.16664 -7.98390 -6.43663 -3.84543 -0.13798 0.33213 2.27941 2.53524 3.10757 3.16728 3.25646 3.31496 3.33044 3.61735 3.87992 3.98591 4.04091 4.07985 4.14432 4.29022 4.42970 4.49991 4.76638 4.85843 5.05890 5.08715 5.11982 5.22986 5.24333 5.33063 5.48216 5.50500 5.63022 5.72348 5.82082 5.85008 5.87970 5.91537 6.05709 6.22713 6.25481 6.36193 6.98339 7.02962 7.12874 7.53475 7.54103 7.71596 8.04142 8.58806 9.15922 9.51951 10.03119 10.74005 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.032103 B = 0.001690 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.985299 B =16559.231410 C =16808.571642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.075 3.925 3 H 0.049 0.951 4 N -0.656 5.656 5 C 0.050 3.950 6 C 0.440 3.560 7 O -0.582 6.582 8 N -0.563 5.563 9 C -0.299 4.299 10 H 0.103 0.897 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.930 3.070 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.269 1.269 17 C 0.141 3.859 18 H 0.091 0.909 19 C -0.158 4.158 20 N -0.713 5.713 21 C 0.563 3.437 22 O -0.525 6.525 23 C -0.154 4.154 24 C 0.124 3.876 25 N -0.457 5.457 26 C 0.097 3.903 27 C 0.045 3.955 28 F -0.124 7.124 29 C -0.052 4.052 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.352 0.648 34 H 0.044 0.956 35 H 0.087 0.913 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.084 0.916 41 H 0.400 0.600 42 H 0.168 0.832 43 H 0.175 0.825 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.433 3.653 -26.594 27.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.035 4.035 3 H 0.067 0.933 4 N -0.290 5.290 5 C -0.082 4.082 6 C 0.226 3.774 7 O -0.467 6.467 8 N -0.200 5.200 9 C -0.429 4.429 10 H 0.121 0.879 11 C -0.179 4.179 12 N -0.543 5.543 13 Si 0.757 3.243 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.194 1.194 17 C 0.037 3.963 18 H 0.109 0.891 19 C -0.216 4.216 20 N -0.367 5.367 21 C 0.348 3.652 22 O -0.402 6.402 23 C -0.160 4.160 24 C -0.035 4.035 25 N -0.164 5.164 26 C -0.061 4.061 27 C 0.024 3.976 28 F -0.102 7.102 29 C -0.079 4.079 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.172 0.828 34 H 0.062 0.938 35 H 0.105 0.895 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.103 0.897 41 H 0.237 0.763 42 H 0.185 0.815 43 H 0.192 0.808 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -7.853 2.744 -26.296 27.580 hybrid contribution 1.408 0.655 0.362 1.595 sum -6.445 3.398 -25.933 26.937 Atomic orbital electron populations 1.21901 0.94386 1.03063 1.00968 1.21729 0.96615 0.95983 0.89201 0.93313 1.60197 1.35001 1.31678 1.02103 1.21739 1.01392 0.93869 0.91213 1.19767 0.85037 0.88207 0.84411 1.90531 1.55305 1.16096 1.84727 1.41857 1.57710 1.12418 1.07991 1.19707 1.39950 0.96466 0.86783 0.87887 1.25264 0.97629 0.95790 0.99260 1.69609 1.48591 1.08884 1.27222 0.85852 0.78770 0.79520 0.80120 1.20426 1.20922 1.19392 1.21178 0.98856 0.93601 0.82666 0.89143 1.22137 1.02248 0.94302 1.02955 1.46075 1.25807 1.56709 1.08076 1.17878 0.84522 0.80019 0.82786 1.90829 1.21889 1.42166 1.85281 1.20950 0.97467 1.02804 0.94744 1.23102 0.91322 0.91265 0.97766 1.67782 1.32798 1.17426 0.98379 1.23193 0.90877 0.95406 0.96666 1.18678 0.94883 1.02472 0.81607 1.91572 1.83393 1.94627 1.40641 1.21822 1.00559 0.95410 0.90087 0.91823 0.93373 0.91003 0.82763 0.93770 0.89488 0.77477 0.91865 0.91974 0.92755 0.89715 0.76304 0.81547 0.80837 0.82032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.93 37.16 0.33 -0.98 16 2 C 0.08 0.80 2.66 -67.71 -0.18 0.62 16 3 H 0.05 0.50 7.80 -51.93 -0.40 0.10 16 4 N -0.66 -9.54 5.14 -107.99 -0.55 -10.09 16 5 C 0.05 0.83 5.96 -4.98 -0.03 0.80 16 6 C 0.44 10.07 7.82 -10.99 -0.09 9.99 16 7 O -0.58 -15.41 15.78 5.54 0.09 -15.32 16 8 N -0.56 -13.99 5.29 -10.96 -0.06 -14.05 16 9 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 10 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 11 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 12 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 13 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 14 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 17 C 0.14 1.43 2.30 -67.93 -0.16 1.28 16 18 H 0.09 1.07 7.58 -51.93 -0.39 0.67 16 19 C -0.16 -1.70 9.02 37.16 0.34 -1.37 16 20 N -0.71 -5.76 4.94 -54.74 -0.27 -6.03 16 21 C 0.56 5.51 7.75 -12.33 -0.10 5.42 16 22 O -0.53 -7.08 16.08 5.32 0.09 -7.00 16 23 C -0.15 -1.20 5.89 -104.83 -0.62 -1.82 16 24 C 0.12 0.78 10.71 -17.13 -0.18 0.60 16 25 N -0.46 -3.26 10.34 -12.86 -0.13 -3.39 16 26 C 0.10 0.59 11.16 -17.40 -0.19 0.39 16 27 C 0.05 0.31 7.33 -39.34 -0.29 0.02 16 28 F -0.12 -0.91 17.28 2.25 0.04 -0.87 16 29 C -0.05 -0.40 9.70 -38.80 -0.38 -0.78 16 30 H 0.06 0.63 7.45 -51.93 -0.39 0.24 16 31 H 0.05 0.29 6.29 -51.93 -0.33 -0.04 16 32 H 0.07 0.70 6.57 -51.93 -0.34 0.36 16 33 H 0.35 5.43 7.62 -39.29 -0.30 5.13 16 34 H 0.04 0.66 8.06 -51.92 -0.42 0.24 16 35 H 0.09 1.31 7.44 -51.93 -0.39 0.93 16 36 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 37 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.06 0.61 6.57 -51.93 -0.34 0.27 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 1.04 7.17 -51.93 -0.37 0.67 16 41 H 0.40 2.17 4.64 -40.82 -0.19 1.98 16 42 H 0.17 0.59 6.42 -52.49 -0.34 0.25 16 43 H 0.17 0.58 8.06 -52.48 -0.42 0.16 16 44 H 0.16 1.24 7.73 -52.49 -0.41 0.83 16 LS Contribution 374.08 15.07 5.64 5.64 Total: -1.00 -33.12 374.08 -6.53 -39.65 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -5.28 Total: 12.88 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -1.78 Total: 6.26 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -0.29 Total: -57.11 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: 0.17 Total: -22.32 kcal Atomic # 9 Polarization: -0.91 SS G_CDS: 0.04 Total: -0.87 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.12 -6.53 -39.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282111912.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.649 kcal (2) G-P(sol) polarization free energy of solvation -33.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds