Wall clock time and date at job start Tue Mar 31 2020 20:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47352 * 2 1 4 4 N 1.46904 * 109.46868 * 119.99739 * 2 1 3 5 5 C 1.46899 * 111.00006 * 275.00098 * 4 2 1 6 6 C 1.50698 * 109.47481 * 179.97438 * 5 4 2 7 7 O 1.21300 * 119.99595 * 0.02562 * 6 5 4 8 8 N 1.34764 * 120.00528 * 179.97438 * 6 5 4 9 9 C 1.37101 * 120.00442 * 180.02562 * 8 6 5 10 10 H 1.08003 * 119.99383 * 0.02562 * 9 8 6 11 11 C 1.38946 * 120.00189 * 180.02562 * 9 8 6 12 12 N 1.31413 * 120.00251 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00019 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46901 * 89.99854 * 13 11 9 15 15 H 1.48497 * 109.47319 * 210.00196 * 13 11 9 16 16 H 1.48496 * 109.47358 * 330.00511 * 13 11 9 17 17 C 1.52995 * 109.47412 * 239.99680 * 2 1 3 18 18 H 1.09002 * 109.47452 * 175.00315 * 17 2 1 19 19 C 1.53008 * 109.47295 * 295.00370 * 17 2 1 20 20 N 1.46505 * 109.47024 * 55.00100 * 17 2 1 21 21 C 1.34777 * 119.99724 * 155.00353 * 20 17 2 22 22 O 1.21553 * 120.00290 * 359.97438 * 21 20 17 23 23 C 1.47849 * 119.99699 * 179.72334 * 21 20 17 24 24 C 1.39561 * 120.54533 * 359.97438 * 23 21 20 25 25 N 1.31662 * 120.61834 * 179.74689 * 24 23 21 26 26 C 1.31941 * 121.90554 * 0.54438 * 25 24 23 27 27 C 1.38527 * 121.04634 * 359.71826 * 26 25 24 28 28 F 1.35103 * 120.37239 * 179.97438 * 27 26 25 29 29 C 1.38616 * 119.25494 * 0.02562 * 27 26 25 30 30 H 1.09002 * 109.47181 * 300.00353 * 1 2 3 31 31 H 1.09007 * 109.47299 * 60.00309 * 1 2 3 32 32 H 1.08998 * 109.47352 * 180.02562 * 1 2 3 33 33 H 1.00902 * 110.99676 * 151.04786 * 4 2 1 34 34 H 1.09008 * 109.47045 * 300.00473 * 5 4 2 35 35 H 1.08997 * 109.47193 * 59.99916 * 5 4 2 36 36 H 0.97000 * 119.99875 * 0.02562 * 8 6 5 37 37 H 0.96998 * 120.00386 * 179.97438 * 12 11 9 38 38 H 1.09002 * 109.46916 * 59.99616 * 19 17 2 39 39 H 1.08991 * 109.47246 * 180.02562 * 19 17 2 40 40 H 1.08998 * 109.46377 * 300.00233 * 19 17 2 41 41 H 0.97000 * 119.99792 * 334.99921 * 20 17 2 42 42 H 1.07990 * 119.68773 * 0.02562 * 24 23 21 43 43 H 1.08004 * 119.47087 * 179.69877 * 26 25 24 44 44 H 1.08000 * 120.86744 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0823 0.2227 2.3469 6 6 2.5871 -0.5216 3.5562 7 8 2.8675 -1.6986 3.4704 8 7 2.7280 0.1206 4.7325 9 6 3.1877 -0.5564 5.8325 10 1 3.4374 -1.6044 5.7561 11 6 3.3324 0.1057 7.0455 12 7 3.0282 1.3807 7.1385 13 14 3.9581 -0.8170 8.5443 14 1 5.4392 -0.7238 8.6002 15 1 3.3777 -0.2174 9.7726 16 1 3.5552 -2.2432 8.4516 17 6 2.0400 -0.7213 -1.2491 18 1 3.1264 -0.6444 -1.2950 19 6 1.6352 -2.1956 -1.1879 20 7 1.4559 -0.1037 -2.4424 21 6 2.0914 -0.1940 -3.6275 22 8 3.1493 -0.7873 -3.7063 23 6 1.4988 0.4240 -4.8329 24 6 0.2819 1.1030 -4.7566 25 7 -0.2446 1.6581 -5.8281 26 6 0.3411 1.5894 -7.0083 27 6 1.5483 0.9292 -7.1695 28 9 2.1358 0.8667 -8.3845 29 6 2.1460 0.3324 -6.0704 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 2.9173 -1.1205 1.0288 34 1 2.7587 1.0463 2.1182 35 1 1.0870 0.6164 2.5525 36 1 2.5041 1.0619 4.8010 37 1 3.1288 1.8428 7.9854 38 1 0.5489 -2.2724 -1.1420 39 1 1.9990 -2.7095 -2.0775 40 1 2.0698 -2.6549 -0.3001 41 1 0.6118 0.3701 -2.3794 42 1 -0.2304 1.1776 -3.8089 43 1 -0.1282 2.0550 -7.8624 44 1 3.0871 -0.1886 -6.1663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282111912.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:41 Heat of formation + Delta-G solvation = -100.697575 kcal Electronic energy + Delta-G solvation = -27971.000037 eV Core-core repulsion = 23643.982034 eV Total energy + Delta-G solvation = -4327.018003 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.11698 -41.83090 -40.51556 -40.06573 -38.52837 -36.07346 -35.44682 -33.82979 -33.27829 -32.78028 -31.43766 -30.04133 -28.13250 -26.41140 -26.05320 -24.80990 -24.48704 -22.06446 -21.11309 -20.84440 -19.93523 -19.60712 -18.54567 -18.07716 -17.88947 -17.31815 -17.11365 -16.98920 -16.72483 -16.55759 -16.20037 -16.02207 -15.62169 -15.38799 -15.13242 -15.00333 -14.49906 -14.45489 -14.33463 -14.23898 -13.66809 -13.52254 -13.49771 -13.40244 -13.08220 -13.05414 -12.83348 -12.51719 -12.40471 -12.11925 -11.94827 -11.68618 -11.60710 -11.49540 -11.16317 -10.73825 -10.38081 -10.29954 -10.12842 -10.00233 -9.35811 -8.45988 -5.94370 -0.68269 -0.20380 1.38433 1.42451 1.54873 1.60351 1.79164 2.07167 2.30115 2.53334 2.80661 2.96224 3.12907 3.21619 3.45939 3.52551 3.55259 3.61313 3.63834 3.92627 3.95552 4.19261 4.32377 4.35311 4.47504 4.48519 4.60954 4.62293 4.67003 4.71804 4.79682 4.85577 4.98472 5.07006 5.27520 5.32597 5.38930 5.42014 5.54231 5.89418 6.10193 6.33808 6.35406 6.52830 6.61290 7.00834 7.13925 7.57927 8.13369 8.71319 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.032103 B = 0.001690 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.985299 B =16559.231410 C =16808.571642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.080 3.920 3 H 0.062 0.938 4 N -0.668 5.668 5 C 0.066 3.934 6 C 0.437 3.563 7 O -0.623 6.623 8 N -0.574 5.574 9 C -0.333 4.333 10 H 0.078 0.922 11 C -0.013 4.013 12 N -0.920 5.920 13 Si 0.992 3.008 14 H -0.272 1.272 15 H -0.271 1.271 16 H -0.274 1.274 17 C 0.149 3.851 18 H 0.071 0.929 19 C -0.152 4.152 20 N -0.697 5.697 21 C 0.565 3.435 22 O -0.570 6.570 23 C -0.165 4.165 24 C 0.136 3.864 25 N -0.470 5.470 26 C 0.108 3.892 27 C 0.039 3.961 28 F -0.128 7.128 29 C -0.060 4.060 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.343 0.657 34 H 0.066 0.934 35 H 0.109 0.891 36 H 0.397 0.603 37 H 0.277 0.723 38 H 0.074 0.926 39 H 0.044 0.956 40 H 0.065 0.935 41 H 0.415 0.585 42 H 0.197 0.803 43 H 0.202 0.798 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.152 5.221 -27.354 29.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.030 4.030 3 H 0.080 0.920 4 N -0.302 5.302 5 C -0.066 4.066 6 C 0.225 3.775 7 O -0.509 6.509 8 N -0.211 5.211 9 C -0.463 4.463 10 H 0.096 0.904 11 C -0.212 4.212 12 N -0.561 5.561 13 Si 0.815 3.185 14 H -0.197 1.197 15 H -0.195 1.195 16 H -0.199 1.199 17 C 0.044 3.956 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.351 5.351 21 C 0.352 3.648 22 O -0.449 6.449 23 C -0.170 4.170 24 C -0.022 4.022 25 N -0.177 5.177 26 C -0.050 4.050 27 C 0.017 3.983 28 F -0.107 7.107 29 C -0.087 4.087 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.163 0.837 34 H 0.084 0.916 35 H 0.126 0.874 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.256 0.744 42 H 0.213 0.787 43 H 0.219 0.781 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.619 4.358 -27.069 29.056 hybrid contribution 1.919 0.163 0.496 1.989 sum -7.701 4.521 -26.573 28.033 Atomic orbital electron populations 1.21936 0.92651 1.03100 1.02624 1.21787 0.97758 0.96031 0.87381 0.92016 1.60228 1.34662 1.32087 1.03198 1.21588 1.02517 0.93579 0.88937 1.20903 0.83154 0.87997 0.85438 1.90502 1.56576 1.18238 1.85595 1.41925 1.58343 1.12581 1.08249 1.19658 1.42072 0.95951 0.88614 0.90374 1.26011 0.97281 0.96629 1.01329 1.69664 1.48617 1.09653 1.28138 0.84946 0.78430 0.78037 0.77039 1.19748 1.19534 1.19852 1.20924 0.97935 0.93331 0.83379 0.91056 1.22050 1.02822 0.94600 1.01531 1.45845 1.26109 1.56176 1.06961 1.18159 0.83898 0.79276 0.83510 1.90814 1.23929 1.44247 1.85936 1.20761 0.98414 1.04121 0.93699 1.23505 0.90348 0.89590 0.98767 1.67906 1.33025 1.17980 0.98798 1.23634 0.90072 0.94006 0.97251 1.18702 0.95362 1.03025 0.81183 1.91561 1.83578 1.94733 1.40828 1.21875 1.00527 0.95544 0.90735 0.92258 0.89687 0.91800 0.83727 0.91620 0.87352 0.76949 0.91328 0.90695 0.93674 0.91649 0.74415 0.78666 0.78129 0.82875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.93 71.98 0.64 -1.51 16 2 C 0.08 1.53 2.66 44.91 0.12 1.65 16 3 H 0.06 1.07 7.80 -2.39 -0.02 1.05 16 4 N -0.67 -18.88 5.14 -495.58 -2.55 -21.43 16 5 C 0.07 2.09 5.96 85.56 0.51 2.60 16 6 C 0.44 20.20 7.82 87.66 0.69 20.88 16 7 O -0.62 -33.85 15.78 -3.09 -0.05 -33.90 16 8 N -0.57 -28.87 5.29 -306.99 -1.62 -30.50 16 9 C -0.33 -18.78 9.68 84.04 0.81 -17.97 16 10 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 11 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 12 N -0.92 -49.11 13.05 21.66 0.28 -48.83 16 13 Si 0.99 42.75 29.55 68.60 2.03 44.77 16 14 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 15 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 17 C 0.15 2.88 2.30 44.99 0.10 2.99 16 18 H 0.07 1.70 7.58 -2.39 -0.02 1.68 16 19 C -0.15 -3.24 9.02 71.98 0.65 -2.59 16 20 N -0.70 -9.87 4.94 -445.38 -2.20 -12.07 16 21 C 0.56 10.59 7.75 86.79 0.67 11.27 16 22 O -0.57 -15.71 16.08 -3.88 -0.06 -15.77 16 23 C -0.16 -2.33 5.89 -20.00 -0.12 -2.45 16 24 C 0.14 1.33 10.71 85.04 0.91 2.24 16 25 N -0.47 -5.35 10.34 -194.60 -2.01 -7.36 16 26 C 0.11 1.05 11.16 84.75 0.95 1.99 16 27 C 0.04 0.49 7.33 22.43 0.16 0.65 16 28 F -0.13 -1.79 17.28 44.97 0.78 -1.01 16 29 C -0.06 -0.90 9.70 22.78 0.22 -0.67 16 30 H 0.06 0.97 7.45 -2.39 -0.02 0.95 16 31 H 0.08 0.61 6.29 -2.38 -0.01 0.60 16 32 H 0.06 1.08 6.57 -2.39 -0.02 1.07 16 33 H 0.34 10.72 7.62 -89.69 -0.68 10.04 16 34 H 0.07 1.83 8.06 -2.38 -0.02 1.81 16 35 H 0.11 3.01 7.44 -2.39 -0.02 3.00 16 36 H 0.40 18.86 7.90 -92.71 -0.73 18.12 16 37 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 38 H 0.07 1.38 6.57 -2.39 -0.02 1.37 16 39 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.06 1.66 7.17 -2.39 -0.02 1.64 16 41 H 0.42 3.02 4.64 -92.71 -0.43 2.59 16 42 H 0.20 0.56 6.42 -2.92 -0.02 0.54 16 43 H 0.20 0.71 8.06 -2.91 -0.02 0.69 16 44 H 0.15 2.48 7.73 -2.91 -0.02 2.46 16 Total: -1.00 -73.62 374.08 0.63 -73.00 By element: Atomic # 1 Polarization: 34.98 SS G_CDS: -0.75 Total: 34.22 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: 6.79 Total: 18.87 kcal Atomic # 7 Polarization: -112.08 SS G_CDS: -8.10 Total: -120.18 kcal Atomic # 8 Polarization: -49.56 SS G_CDS: -0.11 Total: -49.67 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.78 Total: -1.01 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -73.62 0.63 -73.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282111912.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.701 kcal (2) G-P(sol) polarization free energy of solvation -73.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds