Wall clock time and date at job start Tue Mar 31 2020 20:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47218 * 2 1 4 4 N 1.46900 * 109.47020 * 239.99523 * 2 1 3 5 5 C 1.46899 * 110.99710 * 84.99979 * 4 2 1 6 6 C 1.50702 * 109.46985 * 179.97438 * 5 4 2 7 7 O 1.21290 * 120.00047 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99841 * 180.02562 * 6 5 4 9 9 C 1.37094 * 119.99921 * 180.02562 * 8 6 5 10 10 H 1.08007 * 119.99907 * 359.97438 * 9 8 6 11 11 C 1.38943 * 120.00157 * 179.97438 * 9 8 6 12 12 N 1.31411 * 120.00023 * 0.02562 * 11 9 8 13 13 Si 1.86808 * 120.00148 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47156 * 60.00014 * 13 11 9 15 15 H 1.48500 * 109.47193 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.46831 * 299.99847 * 13 11 9 17 17 C 1.52997 * 109.47060 * 119.99718 * 2 1 3 18 18 H 1.09001 * 109.47289 * 185.00015 * 17 2 1 19 19 C 1.53006 * 109.47127 * 65.00062 * 17 2 1 20 20 N 1.46500 * 109.47473 * 304.99688 * 17 2 1 21 21 C 1.34770 * 120.00256 * 205.00145 * 20 17 2 22 22 O 1.21550 * 120.00262 * 359.97438 * 21 20 17 23 23 C 1.47848 * 119.99966 * 180.02562 * 21 20 17 24 24 C 1.39556 * 120.54625 * 359.71458 * 23 21 20 25 25 N 1.31658 * 120.62145 * 179.73134 * 24 23 21 26 26 C 1.31950 * 121.90702 * 0.59021 * 25 24 23 27 27 C 1.38535 * 121.04121 * 359.67710 * 26 25 24 28 28 F 1.35103 * 120.37191 * 180.02562 * 27 26 25 29 29 C 1.38612 * 119.25484 * 0.02562 * 27 26 25 30 30 H 1.09006 * 109.46717 * 300.00105 * 1 2 3 31 31 H 1.08995 * 109.47185 * 59.99552 * 1 2 3 32 32 H 1.09000 * 109.47227 * 180.02562 * 1 2 3 33 33 H 1.00897 * 111.00379 * 208.95482 * 4 2 1 34 34 H 1.09006 * 109.47591 * 300.00114 * 5 4 2 35 35 H 1.09000 * 109.47204 * 60.00090 * 5 4 2 36 36 H 0.96999 * 119.99814 * 359.97438 * 8 6 5 37 37 H 0.96999 * 120.00412 * 180.02562 * 12 11 9 38 38 H 1.09001 * 109.47002 * 299.99574 * 19 17 2 39 39 H 1.08993 * 109.46955 * 60.00011 * 19 17 2 40 40 H 1.09000 * 109.47050 * 179.97438 * 19 17 2 41 41 H 0.97005 * 119.99374 * 25.00210 * 20 17 2 42 42 H 1.07995 * 119.69117 * 0.02562 * 24 23 21 43 43 H 1.07994 * 119.47915 * 179.70450 * 26 25 24 44 44 H 1.08002 * 120.86453 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0824 0.2224 -2.3469 6 6 2.5884 -0.5217 -3.5557 7 8 2.8687 -1.6987 -3.4698 8 7 2.7295 0.1206 -4.7322 9 6 3.1894 -0.5565 -5.8320 10 1 3.4390 -1.6046 -5.7555 11 6 3.3343 0.1055 -7.0449 12 7 3.0311 1.3807 -7.1379 13 14 3.9616 -0.8170 -8.5434 14 1 3.0406 -1.9394 -8.8551 15 1 4.0256 0.1081 -9.7032 16 1 5.3178 -1.3528 -8.2628 17 6 2.0400 -0.7212 1.2493 18 1 3.1263 -0.6443 1.2952 19 6 1.6352 -2.1955 1.1880 20 7 1.4559 -0.1035 2.4424 21 6 2.0913 -0.1936 3.6275 22 8 3.1488 -0.7877 3.7066 23 6 1.5016 0.4293 4.8317 24 6 0.2905 1.1182 4.7530 25 7 -0.2387 1.6690 5.8254 26 6 0.3498 1.6052 7.0047 27 6 1.5567 0.9445 7.1661 28 9 2.1471 0.8871 8.3799 29 6 2.1516 0.3429 6.0682 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 2.9172 -1.1206 -1.0287 34 1 1.0870 0.6162 -2.5525 35 1 2.7588 1.0460 -2.1183 36 1 2.5050 1.0617 -4.8009 37 1 3.1319 1.8428 -7.9847 38 1 0.5489 -2.2724 1.1422 39 1 2.0698 -2.6550 0.3004 40 1 1.9989 -2.7093 2.0778 41 1 0.6118 0.3703 2.3794 42 1 -0.2199 1.1964 3.8045 43 1 -0.1169 2.0752 7.8577 44 1 3.0921 -0.1794 6.1644 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282111913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:44 Heat of formation + Delta-G solvation = -100.588102 kcal Electronic energy + Delta-G solvation = -27971.140557 eV Core-core repulsion = 23644.127301 eV Total energy + Delta-G solvation = -4327.013256 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.11696 -41.83112 -40.51540 -40.06497 -38.52834 -36.07265 -35.44712 -33.82922 -33.27662 -32.78052 -31.43779 -30.04125 -28.13069 -26.41132 -26.05136 -24.80911 -24.48732 -22.06455 -21.11138 -20.84447 -19.93324 -19.60698 -18.54581 -18.07723 -17.88869 -17.31683 -17.11186 -16.99034 -16.72451 -16.55336 -16.20150 -16.02486 -15.62201 -15.38650 -15.13204 -15.00364 -14.49943 -14.45443 -14.33437 -14.23642 -13.66797 -13.51711 -13.49636 -13.40212 -13.07997 -13.05410 -12.82887 -12.51643 -12.41792 -12.12183 -11.94806 -11.68645 -11.60694 -11.48915 -11.16299 -10.73799 -10.38074 -10.29915 -10.12872 -10.00215 -9.35770 -8.45638 -5.94107 -0.68295 -0.20367 1.40439 1.42442 1.53001 1.60362 1.79162 2.07356 2.30235 2.53328 2.80641 2.96269 3.12910 3.21908 3.45953 3.52582 3.55240 3.61308 3.63831 3.92622 3.95574 4.19266 4.32428 4.35307 4.47513 4.48632 4.60957 4.62296 4.67004 4.71785 4.79666 4.85553 4.98428 5.07093 5.27503 5.32590 5.38932 5.41905 5.54209 5.89432 6.10181 6.33809 6.35450 6.52813 6.61518 7.00838 7.13980 7.58034 8.13491 8.71411 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.031996 B = 0.001691 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.896221 B =16554.006427 C =16801.835808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.080 3.920 3 H 0.062 0.938 4 N -0.668 5.668 5 C 0.066 3.934 6 C 0.437 3.563 7 O -0.623 6.623 8 N -0.573 5.573 9 C -0.334 4.334 10 H 0.078 0.922 11 C -0.012 4.012 12 N -0.920 5.920 13 Si 0.992 3.008 14 H -0.272 1.272 15 H -0.271 1.271 16 H -0.273 1.273 17 C 0.149 3.851 18 H 0.071 0.929 19 C -0.152 4.152 20 N -0.697 5.697 21 C 0.565 3.435 22 O -0.570 6.570 23 C -0.165 4.165 24 C 0.136 3.864 25 N -0.470 5.470 26 C 0.108 3.892 27 C 0.039 3.961 28 F -0.128 7.128 29 C -0.060 4.060 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.343 0.657 34 H 0.109 0.891 35 H 0.066 0.934 36 H 0.397 0.603 37 H 0.277 0.723 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.044 0.956 41 H 0.415 0.585 42 H 0.197 0.803 43 H 0.202 0.798 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.143 5.258 27.330 29.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.030 4.030 3 H 0.080 0.920 4 N -0.302 5.302 5 C -0.066 4.066 6 C 0.225 3.775 7 O -0.509 6.509 8 N -0.211 5.211 9 C -0.464 4.464 10 H 0.096 0.904 11 C -0.212 4.212 12 N -0.561 5.561 13 Si 0.815 3.185 14 H -0.197 1.197 15 H -0.195 1.195 16 H -0.198 1.198 17 C 0.044 3.956 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.351 5.351 21 C 0.352 3.648 22 O -0.449 6.449 23 C -0.170 4.170 24 C -0.022 4.022 25 N -0.177 5.177 26 C -0.050 4.050 27 C 0.017 3.983 28 F -0.107 7.107 29 C -0.087 4.087 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.163 0.837 34 H 0.127 0.873 35 H 0.084 0.916 36 H 0.230 0.770 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.256 0.744 42 H 0.213 0.787 43 H 0.219 0.781 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.608 4.395 27.046 29.036 hybrid contribution 1.912 0.151 -0.494 1.980 sum -7.696 4.546 26.553 28.016 Atomic orbital electron populations 1.21936 0.92652 1.03097 1.02624 1.21787 0.97757 0.96031 0.87379 0.92011 1.60224 1.34666 1.32088 1.03198 1.21589 1.02506 0.93579 0.88943 1.20905 0.83170 0.87995 0.85438 1.90499 1.56592 1.18232 1.85582 1.41923 1.58331 1.12587 1.08242 1.19622 1.42166 0.95961 0.88631 0.90361 1.26011 0.97271 0.96620 1.01327 1.69658 1.48624 1.09617 1.28157 0.85011 0.78674 0.77855 0.76932 1.19734 1.19510 1.19837 1.20923 0.97934 0.93330 0.83382 0.91057 1.22051 1.02818 0.94604 1.01531 1.45843 1.26124 1.56167 1.06954 1.18156 0.83878 0.79309 0.83499 1.90813 1.23936 1.44276 1.85902 1.20762 0.98486 1.04016 0.93731 1.23504 0.90346 0.89609 0.98753 1.67907 1.32879 1.18133 0.98791 1.23637 0.90042 0.94015 0.97265 1.18703 0.95354 1.02991 0.81227 1.91562 1.83455 1.94760 1.40924 1.21876 1.00471 0.95579 0.90756 0.89694 0.92250 0.91804 0.83727 0.87344 0.91636 0.76950 0.91322 0.90699 0.91646 0.93679 0.74415 0.78666 0.78130 0.82875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.93 71.98 0.64 -1.51 16 2 C 0.08 1.53 2.66 44.91 0.12 1.65 16 3 H 0.06 1.07 7.80 -2.39 -0.02 1.05 16 4 N -0.67 -18.88 5.14 -495.57 -2.55 -21.43 16 5 C 0.07 2.09 5.97 85.56 0.51 2.60 16 6 C 0.44 20.19 7.82 87.66 0.69 20.87 16 7 O -0.62 -33.83 15.78 -3.06 -0.05 -33.87 16 8 N -0.57 -28.86 5.29 -306.98 -1.62 -30.49 16 9 C -0.33 -18.82 9.68 84.04 0.81 -18.01 16 10 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 11 C -0.01 -0.66 5.50 84.92 0.47 -0.19 16 12 N -0.92 -49.11 13.05 21.66 0.28 -48.83 16 13 Si 0.99 42.72 29.55 68.60 2.03 44.75 16 14 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 15 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 16 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 17 C 0.15 2.88 2.30 44.99 0.10 2.99 16 18 H 0.07 1.70 7.58 -2.39 -0.02 1.68 16 19 C -0.15 -3.24 9.02 71.98 0.65 -2.59 16 20 N -0.70 -9.87 4.94 -445.41 -2.20 -12.08 16 21 C 0.56 10.60 7.75 86.79 0.67 11.27 16 22 O -0.57 -15.71 16.08 -3.87 -0.06 -15.77 16 23 C -0.16 -2.33 5.89 -20.00 -0.12 -2.45 16 24 C 0.14 1.33 10.71 85.04 0.91 2.24 16 25 N -0.47 -5.35 10.34 -194.60 -2.01 -7.36 16 26 C 0.11 1.05 11.16 84.75 0.95 1.99 16 27 C 0.04 0.49 7.33 22.43 0.16 0.65 16 28 F -0.13 -1.79 17.28 44.97 0.78 -1.01 16 29 C -0.06 -0.90 9.70 22.78 0.22 -0.67 16 30 H 0.08 0.61 6.29 -2.38 -0.02 0.60 16 31 H 0.06 0.97 7.45 -2.39 -0.02 0.96 16 32 H 0.06 1.08 6.56 -2.39 -0.02 1.07 16 33 H 0.34 10.72 7.61 -89.70 -0.68 10.04 16 34 H 0.11 3.02 7.44 -2.38 -0.02 3.00 16 35 H 0.07 1.83 8.06 -2.39 -0.02 1.81 16 36 H 0.40 18.86 7.90 -92.71 -0.73 18.12 16 37 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 38 H 0.07 1.38 6.56 -2.39 -0.02 1.37 16 39 H 0.06 1.66 7.17 -2.39 -0.02 1.64 16 40 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.42 3.03 4.64 -92.70 -0.43 2.60 16 42 H 0.20 0.56 6.42 -2.91 -0.02 0.54 16 43 H 0.20 0.72 8.06 -2.91 -0.02 0.69 16 44 H 0.15 2.48 7.74 -2.91 -0.02 2.46 16 Total: -1.00 -73.54 374.08 0.63 -72.91 By element: Atomic # 1 Polarization: 35.10 SS G_CDS: -0.75 Total: 34.35 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 6.79 Total: 18.84 kcal Atomic # 7 Polarization: -112.08 SS G_CDS: -8.10 Total: -120.18 kcal Atomic # 8 Polarization: -49.54 SS G_CDS: -0.11 Total: -49.65 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.78 Total: -1.01 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -73.54 0.63 -72.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282111913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.677 kcal (2) G-P(sol) polarization free energy of solvation -73.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds